Wall clock time and date at job start Tue Mar 31 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.21705 * 2 1 4 4 C 1.54483 * 110.24264 * 121.92841 * 2 1 3 5 5 H 1.08997 * 111.00529 * 26.28202 * 4 2 1 6 6 O 1.45201 * 110.96760 * 262.53150 * 4 2 1 7 7 C 1.34226 * 117.00442 * 156.16755 * 6 4 2 8 8 O 1.20833 * 119.99498 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00473 * 180.02562 * 7 6 4 10 10 C 1.50703 * 109.47367 * 180.02562 * 9 7 6 11 11 C 1.38303 * 119.93037 * 269.73081 * 10 9 7 12 12 C 1.38099 * 120.06797 * 179.72228 * 11 10 9 13 13 C 1.38876 * 119.93177 * 0.54476 * 12 11 10 14 14 O 1.35752 * 120.07138 * 179.74747 * 13 12 11 15 15 C 1.34829 * 117.00241 * 174.44089 * 14 13 12 16 16 H 1.08006 * 119.99459 * 5.05678 * 15 14 13 17 17 C 1.38646 * 119.99936 * 185.05520 * 15 14 13 18 18 N 1.31553 * 120.00560 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47322 * 120.00199 * 19 17 15 22 22 H 1.48502 * 109.47148 * 240.00205 * 19 17 15 23 23 C 1.38885 * 119.86149 * 359.72681 * 13 12 11 24 24 C 1.38093 * 119.92739 * 359.97438 * 23 13 12 25 25 C 1.54625 * 101.76446 * 144.41744 * 4 2 1 26 26 C 1.51283 * 104.19743 * 335.19913 * 25 4 2 27 27 O 1.21280 * 124.94434 * 196.23682 * 26 25 4 28 28 N 1.34421 * 110.11297 * 16.49569 * 26 25 4 29 29 C 1.46500 * 124.34881 * 180.16261 * 28 26 25 30 30 H 1.08998 * 109.47074 * 298.07531 * 1 2 3 31 31 H 1.09000 * 109.46934 * 58.07124 * 1 2 3 32 32 H 1.09000 * 109.47420 * 178.07468 * 1 2 3 33 33 H 1.09001 * 109.47351 * 300.00231 * 9 7 6 34 34 H 1.08999 * 109.47357 * 60.00236 * 9 7 6 35 35 H 1.07999 * 119.96274 * 359.97438 * 11 10 9 36 36 H 1.08005 * 120.03448 * 180.26853 * 12 11 10 37 37 H 0.96997 * 120.00763 * 180.02562 * 18 17 15 38 38 H 1.07994 * 120.03471 * 179.97438 * 23 13 12 39 39 H 1.08002 * 119.96527 * 180.02562 * 24 23 13 40 40 H 1.09001 * 110.48531 * 216.52305 * 25 4 2 41 41 H 1.09003 * 110.49032 * 93.87609 * 25 4 2 42 42 H 1.09001 * 109.47045 * 0.02871 * 29 28 26 43 43 H 1.09001 * 109.47175 * 120.02693 * 29 28 26 44 44 H 1.08998 * 109.46901 * 240.02350 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0228 0.0000 4 6 2.0645 -0.7665 1.2301 5 1 1.3437 -1.5097 1.5709 6 8 2.4097 0.1489 2.3031 7 6 2.4107 -0.3469 3.5505 8 8 2.1328 -1.5075 3.7395 9 6 2.7583 0.5440 4.7151 10 6 2.6868 -0.2501 5.9939 11 6 1.5001 -0.3137 6.7013 12 6 1.4298 -1.0453 7.8705 13 6 2.5554 -1.7083 8.3418 14 8 2.4909 -2.4240 9.4935 15 6 3.5841 -3.1360 9.8338 16 1 4.4857 -3.0557 9.2446 17 6 3.5508 -3.9711 10.9401 18 7 2.4524 -4.0693 11.6574 19 14 5.0657 -4.9570 11.4120 20 1 6.1616 -4.6706 10.4517 21 1 5.4964 -4.5775 12.7815 22 1 4.7434 -6.4062 11.3783 23 6 3.7472 -1.6379 7.6321 24 6 3.8093 -0.9098 6.4604 25 6 3.3287 -1.4453 0.6538 26 6 3.0523 -1.5452 -0.8302 27 8 3.6581 -2.2568 -1.6032 28 7 2.0414 -0.7263 -1.1683 29 6 1.5153 -0.5802 -2.5277 30 1 -0.3633 0.4836 0.9067 31 1 -0.3633 0.5435 -0.8722 32 1 -0.3634 -1.0271 -0.0345 33 1 3.7681 0.9336 4.5858 34 1 2.0522 1.3730 4.7619 35 1 0.6264 0.2060 6.3368 36 1 0.5016 -1.0981 8.4202 37 1 2.4292 -4.6532 12.4316 38 1 4.6243 -2.1521 7.9962 39 1 4.7357 -0.8550 5.9078 40 1 3.4591 -2.4377 1.0852 41 1 4.2094 -0.8298 0.8372 42 1 2.0684 -1.2326 -3.2034 43 1 0.4604 -0.8543 -2.5405 44 1 1.6256 0.4550 -2.8507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806065321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:03 Heat of formation + Delta-G solvation = -115.414188 kcal Electronic energy + Delta-G solvation = -27578.683983 eV Core-core repulsion = 23462.244241 eV Total energy + Delta-G solvation = -4116.439741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31196 -40.16328 -39.00590 -37.44165 -36.68487 -36.02335 -32.79205 -32.45839 -31.46261 -31.16766 -30.21840 -27.33548 -26.71558 -25.41479 -24.84552 -22.33584 -22.03396 -21.37231 -20.33209 -19.83561 -18.09584 -18.01487 -17.18794 -17.00776 -16.77123 -16.18751 -16.11670 -15.37604 -14.74292 -14.66838 -14.46745 -14.41440 -14.22362 -13.80767 -13.66551 -13.65863 -13.40770 -12.99067 -12.86568 -12.76485 -12.69095 -12.65502 -12.37854 -12.17843 -11.90011 -11.58670 -11.44741 -11.32518 -10.99307 -10.95115 -10.83241 -10.65590 -10.44520 -10.38587 -10.17039 -9.36932 -9.22028 -8.86617 -8.21842 -7.24755 -6.48248 -4.06807 1.95559 2.15808 2.19328 2.23732 2.39634 2.75131 3.11272 3.13102 3.18400 3.77500 3.92653 3.94507 4.21053 4.38294 4.54322 4.67080 4.80300 4.84261 4.89154 5.01115 5.04072 5.11453 5.12690 5.14872 5.22174 5.25670 5.30113 5.41945 5.45682 5.56529 5.63189 5.66230 5.77794 6.01706 6.16282 6.28720 6.35791 6.60407 6.64370 6.85206 7.00591 7.17328 7.29598 7.40115 7.72481 7.74947 7.77978 7.96818 8.97419 9.66400 10.69588 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002116 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.372583 B =13232.350061 C =13962.493812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.097 0.903 4 C 0.082 3.918 5 H 0.110 0.890 6 O -0.349 6.349 7 C 0.455 3.545 8 O -0.483 6.483 9 C -0.048 4.048 10 C -0.187 4.187 11 C -0.056 4.056 12 C -0.192 4.192 13 C 0.160 3.840 14 O -0.175 6.175 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.233 4.233 24 C -0.052 4.052 25 C -0.175 4.175 26 C 0.525 3.475 27 O -0.526 6.526 28 N -0.618 5.618 29 C 0.093 3.907 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 12.155 -22.716 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.115 0.885 4 C 0.025 3.975 5 H 0.128 0.872 6 O -0.267 6.267 7 C 0.297 3.703 8 O -0.368 6.368 9 C -0.085 4.085 10 C -0.188 4.188 11 C -0.074 4.074 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.078 6.078 15 C -0.468 4.468 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.070 4.070 25 C -0.215 4.215 26 C 0.313 3.687 27 O -0.402 6.402 28 N -0.355 5.355 29 C -0.049 4.049 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.541 11.238 -22.780 25.528 hybrid contribution 0.713 -0.632 0.187 0.971 sum -1.828 10.606 -22.592 25.025 Atomic orbital electron populations 1.22120 0.92974 1.03300 1.03537 1.21593 0.95391 0.96720 0.83101 0.88496 1.23444 0.96867 0.91587 0.85555 0.87241 1.86566 1.80975 1.42970 1.16181 1.24370 0.74029 0.88782 0.83136 1.90728 1.42722 1.18460 1.84848 1.20111 1.04441 0.96540 0.87447 1.18613 0.95482 1.07626 0.97031 1.20415 0.95876 0.97147 0.93981 1.20163 0.97500 1.04443 0.99034 1.19412 0.93036 0.90756 0.86270 1.83976 1.39455 1.52723 1.31660 1.21396 0.90425 1.22422 1.12514 0.88918 1.25308 0.98744 0.96962 0.95534 1.70042 1.26534 1.36334 1.16633 0.85635 0.79779 0.79142 0.78804 1.19056 1.20115 1.20094 1.21116 0.98970 1.06729 0.98433 1.20533 0.96650 0.94861 0.95004 1.22860 1.00128 1.05080 0.93441 1.20662 0.79157 0.78615 0.90299 1.90744 1.51855 1.40615 1.57022 1.48247 1.35405 1.43221 1.08581 1.21587 0.99527 1.02412 0.81329 0.90310 0.91301 0.91573 0.87673 0.87617 0.87182 0.86402 0.92002 0.85439 0.87614 0.86862 0.86454 0.89710 0.91752 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.70 37.16 0.32 -0.53 16 2 C 0.14 0.93 3.67 -67.01 -0.25 0.68 16 3 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 4 C 0.08 0.75 2.92 -25.10 -0.07 0.67 16 5 H 0.11 1.11 7.10 -51.93 -0.37 0.74 16 6 O -0.35 -3.47 9.99 -39.25 -0.39 -3.86 16 7 C 0.46 5.68 7.95 36.00 0.29 5.97 16 8 O -0.48 -7.94 15.33 -18.76 -0.29 -8.23 16 9 C -0.05 -0.54 5.94 -29.04 -0.17 -0.71 16 10 C -0.19 -2.99 4.38 -104.57 -0.46 -3.45 16 11 C -0.06 -0.96 9.69 -39.61 -0.38 -1.34 16 12 C -0.19 -4.00 9.99 -39.40 -0.39 -4.39 16 13 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 14 O -0.18 -4.97 9.76 0.05 0.00 -4.97 16 15 C -0.39 -10.89 9.49 30.88 0.29 -10.60 16 16 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 19 Si 0.94 20.49 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 23 C -0.23 -5.02 9.17 -39.39 -0.36 -5.38 16 24 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 25 C -0.17 -1.71 6.62 -26.74 -0.18 -1.89 16 26 C 0.53 5.85 8.02 -10.86 -0.09 5.76 16 27 O -0.53 -7.82 17.35 5.56 0.10 -7.72 16 28 N -0.62 -5.10 3.19 -172.70 -0.55 -5.65 16 29 C 0.09 0.55 10.44 59.85 0.63 1.18 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.27 7.74 -51.93 -0.40 -0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.12 1.04 8.11 -51.93 -0.42 0.62 16 42 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 43 H 0.06 0.28 7.67 -51.93 -0.40 -0.11 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -34.69 377.29 -7.18 -41.87 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.90 Total: 2.61 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.57 Total: -10.81 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.21 Total: -30.03 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.58 Total: -24.79 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.69 -7.18 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806065321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.545 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds