Wall clock time and date at job start Tue Mar 31 2020 17:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.21392 * 2 1 4 4 C 1.54481 * 110.24334 * 238.07623 * 2 1 3 5 5 H 1.09003 * 110.97053 * 148.21305 * 4 2 1 6 6 O 1.45202 * 110.97273 * 24.44567 * 4 2 1 7 7 C 1.34227 * 117.00051 * 150.00363 * 6 4 2 8 8 O 1.20829 * 119.99907 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00105 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.47341 * 179.97438 * 9 7 6 11 11 C 1.38322 * 119.96530 * 269.71949 * 10 9 7 12 12 C 1.38280 * 120.13643 * 179.76372 * 11 10 9 13 13 C 1.38117 * 120.07123 * 0.51603 * 12 11 10 14 14 C 1.38856 * 119.93030 * 359.73973 * 13 12 11 15 15 O 1.35755 * 120.07146 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99700 * 354.48929 * 15 14 13 17 17 H 1.08005 * 119.99930 * 5.05700 * 16 15 14 18 18 C 1.38652 * 119.99825 * 185.05580 * 16 15 14 19 19 N 1.31556 * 119.99860 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 89.99402 * 20 18 16 22 22 H 1.48496 * 109.47192 * 209.99767 * 20 18 16 23 23 H 1.48501 * 109.46889 * 330.00015 * 20 18 16 24 24 C 1.38078 * 119.96371 * 89.99264 * 10 9 7 25 25 C 1.54634 * 101.76363 * 266.32739 * 4 2 1 26 26 C 1.51284 * 104.19291 * 335.20309 * 25 4 2 27 27 O 1.21280 * 124.93824 * 196.22163 * 26 25 4 28 28 N 1.34416 * 110.11662 * 16.25312 * 26 25 4 29 29 C 1.46504 * 124.34671 * 180.42790 * 28 26 25 30 30 H 1.09000 * 109.47204 * 181.92944 * 1 2 3 31 31 H 1.09000 * 109.47055 * 301.92387 * 1 2 3 32 32 H 1.09004 * 109.47146 * 61.92536 * 1 2 3 33 33 H 1.09009 * 109.46745 * 299.99667 * 9 7 6 34 34 H 1.09003 * 109.47494 * 59.98819 * 9 7 6 35 35 H 1.08001 * 119.92681 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96185 * 180.25685 * 12 11 10 37 37 H 1.08001 * 120.03899 * 179.72692 * 13 12 11 38 38 H 0.97003 * 119.99786 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.04063 * 0.02562 * 24 10 9 40 40 H 1.08992 * 110.48354 * 93.88030 * 25 4 2 41 41 H 1.08995 * 110.48514 * 216.52825 * 25 4 2 42 42 H 1.08995 * 109.47115 * 269.97691 * 29 28 26 43 43 H 1.09001 * 109.47116 * 29.97888 * 29 28 26 44 44 H 1.09003 * 109.46947 * 149.97483 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0645 -0.7664 -1.2302 5 1 3.0112 -0.3466 -1.5703 6 8 1.0863 -0.7739 -2.3032 7 6 1.5592 -0.8180 -3.5586 8 8 2.7511 -0.8490 -3.7545 9 6 0.6036 -0.8279 -4.7239 10 6 1.3832 -0.8792 -6.0125 11 6 1.7620 0.2950 -6.6380 12 6 2.4816 0.2521 -7.8180 13 6 2.8153 -0.9641 -8.3813 14 6 2.4321 -2.1445 -7.7586 15 8 2.7581 -3.3414 -8.3100 16 6 3.3540 -3.3163 -9.5191 17 1 3.6252 -2.3721 -9.9679 18 6 3.6186 -4.5025 -10.1864 19 7 4.1996 -4.4779 -11.3664 20 14 3.1489 -6.1355 -9.4104 21 1 1.7696 -6.5007 -9.8223 22 1 4.0949 -7.1878 -9.8607 23 1 3.2085 -6.0161 -7.9314 24 6 1.7139 -2.0981 -6.5704 25 6 2.2646 -2.1873 -0.6539 26 6 2.4538 -1.9625 0.8301 27 8 2.9120 -2.7770 1.6032 28 7 2.0396 -0.7290 1.1673 29 6 2.0909 -0.1823 2.5256 30 1 -0.3633 -1.0271 0.0346 31 1 -0.3633 0.5434 0.8722 32 1 -0.3634 0.4837 -0.9068 33 1 -0.0438 -1.7023 -4.6554 34 1 -0.0042 0.0767 -4.7030 35 1 1.4987 1.2472 -6.2016 36 1 2.7795 1.1705 -8.3018 37 1 3.3736 -0.9970 -9.3052 38 1 4.3851 -5.3079 -11.8331 39 1 1.4137 -3.0145 -6.0842 40 1 1.3827 -2.8010 -0.8373 41 1 3.1508 -2.6526 -1.0852 42 1 1.1610 -0.4129 3.0453 43 1 2.9280 -0.6261 3.0645 44 1 2.2219 0.8987 2.4774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810877520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:07 Heat of formation + Delta-G solvation = -111.141749 kcal Electronic energy + Delta-G solvation = -27841.225769 eV Core-core repulsion = 23724.971295 eV Total energy + Delta-G solvation = -4116.254475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37882 -40.23251 -39.16220 -37.50998 -36.76621 -36.06504 -32.87562 -32.45017 -32.17437 -30.77423 -29.55012 -27.78010 -26.75291 -25.50881 -25.18182 -22.79848 -21.80619 -21.10225 -20.29550 -19.92685 -17.99989 -17.78880 -17.46299 -17.13008 -16.48720 -16.32349 -16.03066 -15.50826 -15.25598 -14.90407 -14.39129 -14.30180 -14.04203 -13.95281 -13.79779 -13.63857 -13.33086 -13.25336 -12.90728 -12.73338 -12.67984 -12.58957 -12.30177 -12.21828 -12.04256 -11.77877 -11.42311 -11.38183 -10.98046 -10.93736 -10.86049 -10.77108 -10.49582 -10.18448 -10.15822 -9.42917 -9.23818 -8.89421 -8.25981 -7.42520 -6.42931 -4.10005 1.76228 2.12082 2.19288 2.19586 2.35028 2.68528 3.21628 3.24875 3.40070 3.76580 3.89703 4.19037 4.22757 4.36690 4.50649 4.60964 4.69873 4.75100 4.81420 4.88041 4.98993 5.06848 5.07976 5.19403 5.22873 5.26001 5.30201 5.36567 5.44666 5.48304 5.60870 5.75461 5.79776 6.02431 6.05033 6.17812 6.22023 6.45629 6.60352 6.71293 7.00343 7.12389 7.25357 7.53849 7.66943 7.72878 7.77160 8.01384 8.92199 9.53819 10.64622 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002442 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.732175 B =11464.500008 C =12609.162606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 H 0.098 0.902 4 C 0.080 3.920 5 H 0.112 0.888 6 O -0.343 6.343 7 C 0.459 3.541 8 O -0.483 6.483 9 C -0.062 4.062 10 C -0.048 4.048 11 C -0.187 4.187 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.160 3.840 15 O -0.217 6.217 16 C -0.390 4.390 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.172 4.172 25 C -0.173 4.173 26 C 0.525 3.475 27 O -0.525 6.525 28 N -0.619 5.619 29 C 0.097 3.903 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.280 0.720 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 12.268 22.405 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.116 0.884 4 C 0.024 3.976 5 H 0.130 0.870 6 O -0.260 6.260 7 C 0.301 3.699 8 O -0.367 6.367 9 C -0.100 4.100 10 C -0.049 4.049 11 C -0.206 4.206 12 C -0.094 4.094 13 C -0.233 4.233 14 C 0.108 3.892 15 O -0.122 6.122 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.191 4.191 25 C -0.213 4.213 26 C 0.312 3.688 27 O -0.401 6.401 28 N -0.355 5.355 29 C -0.045 4.045 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.101 11.480 22.747 27.056 hybrid contribution 0.094 -0.590 0.067 0.601 sum -9.007 10.890 22.814 26.836 Atomic orbital electron populations 1.22008 0.93105 1.03294 1.02914 1.21687 0.96099 0.95999 0.83179 0.88434 1.23377 0.93036 0.95714 0.85459 0.87040 1.86586 1.39621 1.84459 1.15324 1.23986 0.89845 0.72642 0.83424 1.90740 1.17505 1.43385 1.85075 1.20267 0.96120 1.06212 0.87359 1.18640 0.99204 0.93302 0.93710 1.20434 1.05569 0.96281 0.98271 1.20749 0.96672 0.96904 0.95038 1.21336 1.06704 0.91909 1.03331 1.19004 0.92366 0.85670 0.92203 1.83571 1.69108 1.25633 1.33877 1.20761 1.37419 0.96879 0.91473 0.87604 1.24464 0.95768 0.98945 0.94804 1.69645 1.40294 1.29145 1.12590 0.86186 0.78532 0.81484 0.80748 1.19859 1.20761 1.18344 1.19965 1.05061 0.97016 0.97101 1.22813 1.06658 0.98367 0.93441 1.20636 0.76478 0.81366 0.90271 1.90748 1.45039 1.47255 1.57039 1.48279 1.62995 1.15407 1.08829 1.21566 1.02601 0.99144 0.81165 0.91804 0.92128 0.89993 0.86895 0.86920 0.87513 0.87011 0.84864 0.91031 0.86611 0.86386 0.86876 0.92366 0.90459 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.93 37.16 0.33 -0.53 16 2 C 0.13 0.88 3.68 -67.01 -0.25 0.63 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 4 C 0.08 0.70 3.37 -25.09 -0.08 0.62 16 5 H 0.11 1.08 7.13 -51.93 -0.37 0.71 16 6 O -0.34 -3.19 8.44 -39.25 -0.33 -3.52 16 7 C 0.46 5.53 7.95 36.00 0.29 5.82 16 8 O -0.48 -7.75 15.24 -18.75 -0.29 -8.03 16 9 C -0.06 -0.68 5.94 -29.04 -0.17 -0.85 16 10 C -0.05 -0.76 4.37 -104.65 -0.46 -1.22 16 11 C -0.19 -2.96 9.70 -39.53 -0.38 -3.34 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.21 -4.55 9.17 -39.40 -0.36 -4.91 16 14 C 0.16 3.65 6.65 -39.10 -0.26 3.39 16 15 O -0.22 -5.70 8.59 0.04 0.00 -5.70 16 16 C -0.39 -10.94 9.95 30.89 0.31 -10.63 16 17 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.32 13.96 55.48 0.77 -24.54 16 20 Si 0.91 21.66 28.62 -169.99 -4.86 16.79 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.17 -3.31 9.65 -39.39 -0.38 -3.69 16 25 C -0.17 -1.66 6.62 -26.74 -0.18 -1.84 16 26 C 0.52 5.81 8.02 -10.86 -0.09 5.73 16 27 O -0.53 -7.85 17.60 5.56 0.10 -7.75 16 28 N -0.62 -5.02 2.98 -172.70 -0.51 -5.54 16 29 C 0.10 0.57 10.96 59.85 0.66 1.22 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.43 7.49 -51.93 -0.39 0.04 16 33 H 0.11 1.01 8.09 -51.92 -0.42 0.59 16 34 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 38 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.12 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.06 376.45 -6.93 -40.98 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.95 Total: 1.29 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.52 Total: -9.66 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.26 Total: -30.08 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.52 Total: -25.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.06 -6.93 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810877520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.158 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds