Wall clock time and date at job start Tue Mar 31 2020 17:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.21392 * 2 1 4 4 C 1.54481 * 110.24334 * 238.07623 * 2 1 3 5 5 H 1.09003 * 110.97053 * 148.21305 * 4 2 1 6 6 O 1.45202 * 110.97273 * 24.44567 * 4 2 1 7 7 C 1.34227 * 117.00051 * 150.00363 * 6 4 2 8 8 O 1.20829 * 119.99907 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00105 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.47341 * 179.97438 * 9 7 6 11 11 C 1.38322 * 119.96530 * 269.71949 * 10 9 7 12 12 C 1.38280 * 120.13643 * 179.76372 * 11 10 9 13 13 C 1.38117 * 120.07123 * 0.51603 * 12 11 10 14 14 C 1.38856 * 119.93030 * 359.73973 * 13 12 11 15 15 O 1.35755 * 120.07146 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99700 * 354.48929 * 15 14 13 17 17 H 1.08005 * 119.99930 * 5.05700 * 16 15 14 18 18 C 1.38652 * 119.99825 * 185.05580 * 16 15 14 19 19 N 1.31556 * 119.99860 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 89.99402 * 20 18 16 22 22 H 1.48496 * 109.47192 * 209.99767 * 20 18 16 23 23 H 1.48501 * 109.46889 * 330.00015 * 20 18 16 24 24 C 1.38078 * 119.96371 * 89.99264 * 10 9 7 25 25 C 1.54634 * 101.76363 * 266.32739 * 4 2 1 26 26 C 1.51284 * 104.19291 * 335.20309 * 25 4 2 27 27 O 1.21280 * 124.93824 * 196.22163 * 26 25 4 28 28 N 1.34416 * 110.11662 * 16.25312 * 26 25 4 29 29 C 1.46504 * 124.34671 * 180.42790 * 28 26 25 30 30 H 1.09000 * 109.47204 * 181.92944 * 1 2 3 31 31 H 1.09000 * 109.47055 * 301.92387 * 1 2 3 32 32 H 1.09004 * 109.47146 * 61.92536 * 1 2 3 33 33 H 1.09009 * 109.46745 * 299.99667 * 9 7 6 34 34 H 1.09003 * 109.47494 * 59.98819 * 9 7 6 35 35 H 1.08001 * 119.92681 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96185 * 180.25685 * 12 11 10 37 37 H 1.08001 * 120.03899 * 179.72692 * 13 12 11 38 38 H 0.97003 * 119.99786 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.04063 * 0.02562 * 24 10 9 40 40 H 1.08992 * 110.48354 * 93.88030 * 25 4 2 41 41 H 1.08995 * 110.48514 * 216.52825 * 25 4 2 42 42 H 1.08995 * 109.47115 * 269.97691 * 29 28 26 43 43 H 1.09001 * 109.47116 * 29.97888 * 29 28 26 44 44 H 1.09003 * 109.46947 * 149.97483 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0645 -0.7664 -1.2302 5 1 3.0112 -0.3466 -1.5703 6 8 1.0863 -0.7739 -2.3032 7 6 1.5592 -0.8180 -3.5586 8 8 2.7511 -0.8490 -3.7545 9 6 0.6036 -0.8279 -4.7239 10 6 1.3832 -0.8792 -6.0125 11 6 1.7620 0.2950 -6.6380 12 6 2.4816 0.2521 -7.8180 13 6 2.8153 -0.9641 -8.3813 14 6 2.4321 -2.1445 -7.7586 15 8 2.7581 -3.3414 -8.3100 16 6 3.3540 -3.3163 -9.5191 17 1 3.6252 -2.3721 -9.9679 18 6 3.6186 -4.5025 -10.1864 19 7 4.1996 -4.4779 -11.3664 20 14 3.1489 -6.1355 -9.4104 21 1 1.7696 -6.5007 -9.8223 22 1 4.0949 -7.1878 -9.8607 23 1 3.2085 -6.0161 -7.9314 24 6 1.7139 -2.0981 -6.5704 25 6 2.2646 -2.1873 -0.6539 26 6 2.4538 -1.9625 0.8301 27 8 2.9120 -2.7770 1.6032 28 7 2.0396 -0.7290 1.1673 29 6 2.0909 -0.1823 2.5256 30 1 -0.3633 -1.0271 0.0346 31 1 -0.3633 0.5434 0.8722 32 1 -0.3634 0.4837 -0.9068 33 1 -0.0438 -1.7023 -4.6554 34 1 -0.0042 0.0767 -4.7030 35 1 1.4987 1.2472 -6.2016 36 1 2.7795 1.1705 -8.3018 37 1 3.3736 -0.9970 -9.3052 38 1 4.3851 -5.3079 -11.8331 39 1 1.4137 -3.0145 -6.0842 40 1 1.3827 -2.8010 -0.8373 41 1 3.1508 -2.6526 -1.0852 42 1 1.1610 -0.4129 3.0453 43 1 2.9280 -0.6261 3.0645 44 1 2.2219 0.8987 2.4774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810877520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:06 Heat of formation + Delta-G solvation = -132.296445 kcal Electronic energy + Delta-G solvation = -27842.143106 eV Core-core repulsion = 23724.971295 eV Total energy + Delta-G solvation = -4117.171811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.17964 -41.23043 -40.68752 -38.67575 -38.05868 -36.98813 -34.48767 -33.79034 -33.18908 -31.36890 -31.10676 -28.96716 -27.44362 -27.16641 -26.10943 -23.84108 -23.20983 -22.25097 -21.42335 -20.64500 -19.66687 -18.95176 -18.83673 -18.12059 -17.32623 -17.23896 -16.85297 -16.79525 -16.46544 -16.32758 -15.78262 -15.64516 -15.15943 -15.07384 -14.93355 -14.57398 -14.43820 -14.22336 -14.18686 -13.93275 -13.92274 -13.45246 -13.26713 -13.05904 -12.97387 -12.78194 -12.59198 -12.52296 -12.45473 -12.36196 -12.14617 -11.93804 -11.73663 -11.50055 -11.31358 -11.01945 -10.91265 -9.89178 -9.71429 -9.07529 -8.50478 -6.23098 0.40127 0.69636 1.21363 1.30247 1.33751 1.34471 1.49247 1.50926 1.95490 2.27263 2.76912 3.03424 3.09592 3.12083 3.21964 3.48850 3.72013 3.79493 4.06246 4.08288 4.21205 4.29385 4.30603 4.31652 4.42297 4.50428 4.56723 4.61501 4.62166 4.66740 4.71963 4.83787 4.90334 4.95297 4.96177 5.22154 5.34517 5.39136 5.40698 5.48526 5.62900 5.71537 5.76562 5.89931 5.91606 6.24597 6.76201 6.84015 6.93605 7.58935 8.61191 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002442 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.732175 B =11464.500008 C =12609.162606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.125 0.875 4 C 0.080 3.920 5 H 0.103 0.897 6 O -0.324 6.324 7 C 0.467 3.533 8 O -0.530 6.530 9 C -0.060 4.060 10 C -0.039 4.039 11 C -0.164 4.164 12 C -0.079 4.079 13 C -0.237 4.237 14 C 0.116 3.884 15 O -0.247 6.247 16 C -0.398 4.398 17 H 0.081 0.919 18 C 0.009 3.991 19 N -0.923 5.923 20 Si 0.970 3.030 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.178 4.178 25 C -0.173 4.173 26 C 0.518 3.482 27 O -0.575 6.575 28 N -0.612 5.612 29 C 0.090 3.910 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.284 0.716 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 14.840 25.268 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.143 0.857 4 C 0.024 3.976 5 H 0.121 0.879 6 O -0.240 6.240 7 C 0.311 3.689 8 O -0.418 6.418 9 C -0.096 4.096 10 C -0.040 4.040 11 C -0.182 4.182 12 C -0.097 4.097 13 C -0.257 4.257 14 C 0.067 3.933 15 O -0.155 6.155 16 C -0.475 4.475 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.197 4.197 25 C -0.213 4.213 26 C 0.306 3.694 27 O -0.455 6.455 28 N -0.346 5.346 29 C -0.050 4.050 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.043 14.132 25.639 31.656 hybrid contribution 0.875 -1.035 -0.595 1.480 sum -11.169 13.096 25.044 30.388 Atomic orbital electron populations 1.22008 0.91757 1.02987 1.04225 1.21876 0.97015 0.96435 0.81105 0.85689 1.23435 0.92923 0.95257 0.86001 0.87862 1.86578 1.39097 1.83777 1.14545 1.24139 0.89156 0.71257 0.84311 1.90757 1.19501 1.45778 1.85759 1.20409 0.95487 1.09890 0.83841 1.19179 0.97722 0.91791 0.95275 1.21075 1.02251 0.98406 0.96508 1.21135 0.96336 0.96350 0.95834 1.21364 1.07714 0.93488 1.03092 1.19620 0.94462 0.85240 0.93936 1.83510 1.71170 1.27493 1.33333 1.20701 1.37860 0.96300 0.92606 0.90175 1.25275 0.95986 1.02312 0.95351 1.69730 1.42443 1.30213 1.14054 0.85224 0.78908 0.77443 0.79182 1.18676 1.19312 1.19048 1.20327 1.04352 0.99225 0.95816 1.22780 1.06415 0.99307 0.92799 1.20843 0.76198 0.81924 0.90457 1.90716 1.47564 1.48975 1.58225 1.48432 1.61507 1.14418 1.10238 1.21782 1.02616 1.00788 0.79850 0.92952 0.90551 0.88942 0.84327 0.82204 0.82670 0.84090 0.87628 0.90600 0.85750 0.85624 0.88258 0.91292 0.91932 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.93 71.98 0.64 -0.38 16 2 C 0.14 1.30 3.68 45.45 0.17 1.47 16 3 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 4 C 0.08 1.19 3.37 31.65 0.11 1.30 16 5 H 0.10 1.79 7.13 -2.39 -0.02 1.77 16 6 O -0.32 -4.71 8.44 -51.39 -0.43 -5.15 16 7 C 0.47 9.38 7.95 71.23 0.57 9.95 16 8 O -0.53 -15.75 15.24 21.96 0.33 -15.41 16 9 C -0.06 -0.97 5.94 29.10 0.17 -0.79 16 10 C -0.04 -1.10 4.37 -19.88 -0.09 -1.19 16 11 C -0.16 -4.47 9.70 22.30 0.22 -4.26 16 12 C -0.08 -2.63 10.04 22.25 0.22 -2.40 16 13 C -0.24 -10.49 9.17 22.39 0.21 -10.29 16 14 C 0.12 5.48 6.65 22.58 0.15 5.63 16 15 O -0.25 -13.67 8.59 -22.77 -0.20 -13.87 16 16 C -0.40 -23.86 9.95 67.92 0.68 -23.19 16 17 H 0.08 5.02 5.44 -2.91 -0.02 5.01 16 18 C 0.01 0.53 5.49 84.83 0.47 0.99 16 19 N -0.92 -55.85 13.96 21.61 0.30 -55.54 16 20 Si 0.97 46.19 28.62 68.60 1.96 48.16 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.18 -6.67 9.65 22.39 0.22 -6.46 16 25 C -0.17 -3.17 6.62 30.59 0.20 -2.97 16 26 C 0.52 11.18 8.02 87.90 0.71 11.89 16 27 O -0.57 -17.61 17.60 -3.03 -0.05 -17.66 16 28 N -0.61 -8.55 2.98 -818.90 -2.44 -10.99 16 29 C 0.09 0.83 10.96 127.77 1.40 2.23 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 0.48 7.49 -2.38 -0.02 0.46 16 33 H 0.14 1.68 8.09 -2.38 -0.02 1.66 16 34 H 0.16 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 38 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 40 H 0.13 2.06 8.11 -2.39 -0.02 2.04 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.79 7.93 -2.39 -0.02 0.77 16 44 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -81.71 376.45 6.53 -75.18 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.02 Total: 13.75 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.03 Total: -18.47 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -2.14 Total: -66.53 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.35 Total: -52.09 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.16 kcal Total: -81.71 6.53 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810877520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.115 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds