Wall clock time and date at job start Tue Mar 31 2020 17:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.21534 * 2 1 4 4 C 1.54479 * 110.24712 * 121.92652 * 2 1 3 5 5 H 1.08990 * 110.97297 * 211.79340 * 4 2 1 6 6 O 1.45208 * 110.96714 * 335.51478 * 4 2 1 7 7 C 1.34227 * 116.99677 * 209.99724 * 6 4 2 8 8 O 1.20823 * 120.00321 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99307 * 180.02562 * 7 6 4 10 10 C 1.50704 * 109.46719 * 180.02562 * 9 7 6 11 11 C 1.38322 * 119.96880 * 89.99488 * 10 9 7 12 12 C 1.38272 * 120.14147 * 179.97438 * 11 10 9 13 13 C 1.38119 * 120.06816 * 359.97438 * 12 11 10 14 14 C 1.38856 * 119.93245 * 0.02951 * 13 12 11 15 15 O 1.35758 * 120.07154 * 179.97438 * 14 13 12 16 16 C 1.34824 * 116.99612 * 354.45891 * 15 14 13 17 17 H 1.07997 * 120.00755 * 5.05820 * 16 15 14 18 18 C 1.38658 * 119.99699 * 185.05759 * 16 15 14 19 19 N 1.31561 * 120.00204 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47061 * 90.00091 * 20 18 16 22 22 H 1.48502 * 109.47290 * 210.00358 * 20 18 16 23 23 H 1.48504 * 109.47032 * 329.99917 * 20 18 16 24 24 C 1.38078 * 119.96597 * 269.72787 * 10 9 7 25 25 C 1.54632 * 101.76546 * 93.66892 * 4 2 1 26 26 C 1.51282 * 104.19158 * 24.80257 * 25 4 2 27 27 O 1.21279 * 124.93829 * 163.78669 * 26 25 4 28 28 N 1.34422 * 110.11802 * 343.74326 * 26 25 4 29 29 C 1.46505 * 124.34930 * 179.59494 * 28 26 25 30 30 H 1.08996 * 109.46602 * 299.30466 * 1 2 3 31 31 H 1.09000 * 109.46548 * 59.30049 * 1 2 3 32 32 H 1.09000 * 109.46840 * 179.30251 * 1 2 3 33 33 H 1.09005 * 109.47044 * 299.99709 * 9 7 6 34 34 H 1.08990 * 109.47238 * 60.00043 * 9 7 6 35 35 H 1.08007 * 119.93095 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.96948 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.03500 * 180.02562 * 13 12 11 38 38 H 0.96991 * 120.00183 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.03321 * 359.97438 * 24 10 9 40 40 H 1.08996 * 110.48210 * 143.47427 * 25 4 2 41 41 H 1.08999 * 110.48546 * 266.12343 * 25 4 2 42 42 H 1.08994 * 109.46602 * 270.00094 * 29 28 26 43 43 H 1.08999 * 109.46755 * 30.00508 * 29 28 26 44 44 H 1.08998 * 109.46616 * 149.99866 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0647 -0.7665 1.2301 5 1 3.0112 -0.3466 1.5702 6 8 1.0867 -0.7731 2.3035 7 6 1.5601 -0.8172 3.5587 8 8 2.7520 -0.8488 3.7542 9 6 0.6047 -0.8275 4.7242 10 6 1.3848 -0.8786 6.0127 11 6 1.7685 0.2955 6.6351 12 6 2.4839 0.2528 7.8176 13 6 2.8171 -0.9633 8.3813 14 6 2.4335 -2.1438 7.7589 15 8 2.7599 -3.3407 8.3102 16 6 3.5545 -3.3166 9.3991 17 1 3.8346 -2.3726 9.8425 18 6 4.0122 -4.5041 9.9497 19 7 4.7872 -4.4807 11.0125 20 14 3.5284 -6.1370 9.1823 21 1 4.5301 -6.5167 8.1540 22 1 3.4786 -7.1832 10.2350 23 1 2.1918 -6.0091 8.5480 24 6 1.7110 -2.0975 6.5735 25 6 2.2647 -2.1874 0.6538 26 6 2.4539 -1.9625 -0.8302 27 8 2.9119 -2.7770 -1.6033 28 7 2.0397 -0.7289 -1.1674 29 6 2.0905 -0.1824 -2.5258 30 1 -0.3632 0.5030 0.8961 31 1 -0.3632 0.5247 -0.8837 32 1 -0.3633 -1.0276 -0.0125 33 1 -0.0032 0.0771 4.7037 34 1 -0.0424 -1.7018 4.6559 35 1 1.5089 1.2478 6.1966 36 1 2.7818 1.1713 8.3015 37 1 3.3755 -0.9961 9.3052 38 1 5.1076 -5.3113 11.3975 39 1 1.4070 -3.0139 6.0895 40 1 3.1509 -2.6526 1.0851 41 1 1.3827 -2.8010 0.8373 42 1 3.0457 0.3195 -2.6798 43 1 1.9850 -0.9924 -3.2474 44 1 1.2786 0.5322 -2.6604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810877522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:09 Heat of formation + Delta-G solvation = -132.386026 kcal Electronic energy + Delta-G solvation = -27864.982949 eV Core-core repulsion = 23747.807254 eV Total energy + Delta-G solvation = -4117.175696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.17999 -41.23123 -40.68812 -38.67598 -38.06028 -36.98985 -34.48896 -33.79104 -33.18886 -31.37283 -31.10868 -28.96617 -27.44498 -27.17012 -26.11282 -23.83670 -23.20971 -22.24933 -21.42258 -20.63873 -19.66944 -18.95554 -18.83409 -18.12234 -17.32688 -17.22952 -16.85417 -16.83130 -16.46948 -16.29121 -15.80679 -15.64516 -15.16413 -15.06688 -14.97616 -14.55422 -14.43676 -14.21955 -14.18170 -13.93654 -13.92604 -13.44972 -13.23909 -13.07729 -12.98135 -12.81031 -12.57104 -12.51245 -12.45676 -12.36083 -12.14932 -11.92810 -11.75062 -11.50930 -11.31491 -11.01189 -10.91885 -9.88719 -9.71507 -9.07562 -8.50732 -6.23321 0.40085 0.69587 1.21439 1.29834 1.34026 1.34495 1.48176 1.50885 1.95423 2.26893 2.76794 3.01090 3.09748 3.14290 3.21778 3.48797 3.72068 3.79139 4.06192 4.08235 4.20853 4.28473 4.29597 4.33672 4.42330 4.50448 4.56998 4.60072 4.62647 4.66628 4.71996 4.82182 4.91868 4.95085 4.95957 5.22069 5.34636 5.39033 5.41285 5.48017 5.62805 5.71520 5.76424 5.90072 5.91454 6.24499 6.76256 6.83768 6.93608 7.58681 8.60999 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.002495 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.077219 B =11221.557911 C =12435.013984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.124 0.876 4 C 0.080 3.920 5 H 0.103 0.897 6 O -0.324 6.324 7 C 0.467 3.533 8 O -0.530 6.530 9 C -0.059 4.059 10 C -0.039 4.039 11 C -0.164 4.164 12 C -0.079 4.079 13 C -0.237 4.237 14 C 0.116 3.884 15 O -0.247 6.247 16 C -0.398 4.398 17 H 0.081 0.919 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.178 4.178 25 C -0.173 4.173 26 C 0.517 3.483 27 O -0.575 6.575 28 N -0.612 5.612 29 C 0.090 3.910 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.284 0.716 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.082 14.777 -24.611 31.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.142 0.858 4 C 0.024 3.976 5 H 0.120 0.880 6 O -0.240 6.240 7 C 0.311 3.689 8 O -0.418 6.418 9 C -0.096 4.096 10 C -0.040 4.040 11 C -0.182 4.182 12 C -0.097 4.097 13 C -0.257 4.257 14 C 0.067 3.933 15 O -0.155 6.155 16 C -0.475 4.475 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.190 1.190 23 H -0.184 1.184 24 C -0.197 4.197 25 C -0.213 4.213 26 C 0.306 3.694 27 O -0.455 6.455 28 N -0.346 5.346 29 C -0.051 4.051 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.430 14.069 -24.983 31.661 hybrid contribution 0.975 -1.020 0.569 1.521 sum -12.455 13.049 -24.414 30.355 Atomic orbital electron populations 1.22010 0.91639 1.03088 1.04234 1.21858 0.97053 0.96433 0.81116 0.85814 1.23421 0.92913 0.95262 0.86008 0.87957 1.86578 1.39076 1.83783 1.14531 1.24155 0.89160 0.71260 0.84326 1.90760 1.19525 1.45768 1.85763 1.20413 0.95466 1.09908 0.83803 1.19182 0.97713 0.91782 0.95293 1.21072 1.02246 0.98414 0.96513 1.21134 0.96318 0.96350 0.95858 1.21365 1.07824 0.93489 1.02993 1.19616 0.95097 0.85255 0.93299 1.83507 1.62179 1.27536 1.42257 1.20699 1.26767 0.96227 1.03761 0.90181 1.25279 0.95289 1.02321 0.96054 1.69727 1.34222 1.30176 1.22353 0.85232 0.79725 0.77496 0.78357 1.19520 1.19028 1.18438 1.20326 1.05006 0.99233 0.95114 1.22777 1.06422 0.99293 0.92806 1.20848 0.76223 0.81895 0.90465 1.90715 1.47464 1.49138 1.58171 1.48434 1.61531 1.14423 1.10222 1.21781 1.03690 0.99846 0.79750 0.88921 0.90467 0.92870 0.82183 0.84292 0.82689 0.84097 0.87635 0.90602 0.85713 0.88296 0.85566 0.91574 0.91740 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.90 71.98 0.64 -0.36 16 2 C 0.14 1.32 3.68 45.45 0.17 1.49 16 3 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 4 C 0.08 1.21 3.37 31.65 0.11 1.31 16 5 H 0.10 1.81 7.13 -2.39 -0.02 1.79 16 6 O -0.32 -4.73 8.48 -51.38 -0.44 -5.17 16 7 C 0.47 9.42 7.95 71.24 0.57 9.99 16 8 O -0.53 -15.90 15.24 21.97 0.33 -15.56 16 9 C -0.06 -0.96 5.94 29.11 0.17 -0.78 16 10 C -0.04 -1.10 4.37 -19.88 -0.09 -1.19 16 11 C -0.16 -4.48 9.70 22.30 0.22 -4.26 16 12 C -0.08 -2.63 10.04 22.25 0.22 -2.41 16 13 C -0.24 -10.50 9.17 22.39 0.21 -10.29 16 14 C 0.12 5.47 6.65 22.58 0.15 5.62 16 15 O -0.25 -13.65 8.59 -22.76 -0.20 -13.84 16 16 C -0.40 -23.90 9.95 67.92 0.68 -23.23 16 17 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.52 5.49 84.83 0.47 0.98 16 19 N -0.92 -56.06 13.96 21.62 0.30 -55.76 16 20 Si 0.97 46.33 28.62 68.60 1.96 48.29 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 24 C -0.18 -6.65 9.64 22.39 0.22 -6.43 16 25 C -0.17 -3.20 6.62 30.59 0.20 -3.00 16 26 C 0.52 11.26 8.02 87.90 0.71 11.96 16 27 O -0.57 -17.69 17.59 -3.03 -0.05 -17.75 16 28 N -0.61 -8.64 2.98 -818.89 -2.44 -11.07 16 29 C 0.09 0.84 10.96 127.77 1.40 2.24 16 30 H 0.09 0.46 7.54 -2.39 -0.02 0.44 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.16 1.20 8.08 -2.38 -0.02 1.18 16 34 H 0.14 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 38 H 0.28 15.82 8.31 -92.72 -0.77 15.05 16 39 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.13 2.07 8.11 -2.39 -0.02 2.05 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 44 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -81.94 376.49 6.52 -75.41 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.02 Total: 13.79 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 6.03 Total: -18.34 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -2.14 Total: -66.84 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.35 Total: -52.31 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.96 Total: 48.29 kcal Total: -81.94 6.52 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810877522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.971 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds