Wall clock time and date at job start Tue Mar 31 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.28543 * 2 1 4 4 C 1.54478 * 110.24962 * 121.97784 * 2 1 3 5 5 H 1.09001 * 110.96571 * 335.42861 * 4 2 1 6 6 O 1.45195 * 110.97350 * 211.70685 * 4 2 1 7 7 C 1.34222 * 117.00415 * 153.09158 * 6 4 2 8 8 O 1.20825 * 120.00133 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00148 * 179.97438 * 7 6 4 10 10 C 1.50708 * 109.46888 * 179.97438 * 9 7 6 11 11 C 1.38319 * 119.96373 * 270.02210 * 10 9 7 12 12 C 1.38286 * 120.13936 * 179.97438 * 11 10 9 13 13 C 1.38122 * 120.06463 * 359.74846 * 12 11 10 14 14 C 1.38860 * 119.92890 * 0.50250 * 13 12 11 15 15 O 1.35749 * 120.06624 * 179.77454 * 14 13 12 16 16 C 1.34833 * 117.00151 * 5.23519 * 15 14 13 17 17 H 1.07995 * 120.00018 * 354.92143 * 16 15 14 18 18 C 1.38660 * 120.00010 * 174.92297 * 16 15 14 19 19 N 1.31552 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99792 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46938 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47007 * 299.99977 * 20 18 16 23 23 H 1.48501 * 109.46927 * 60.00036 * 20 18 16 24 24 C 1.38070 * 119.96362 * 90.00024 * 10 9 7 25 25 C 1.54629 * 101.79623 * 93.56480 * 4 2 1 26 26 C 1.51281 * 104.19570 * 24.82091 * 25 4 2 27 27 O 1.21281 * 124.94362 * 163.71378 * 26 25 4 28 28 N 1.34415 * 110.11560 * 343.74227 * 26 25 4 29 29 C 1.46506 * 124.35145 * 179.58401 * 28 26 25 30 30 H 1.09001 * 109.46960 * 298.02376 * 1 2 3 31 31 H 1.09001 * 109.46857 * 58.01907 * 1 2 3 32 32 H 1.09000 * 109.47142 * 178.02157 * 1 2 3 33 33 H 1.08997 * 109.47194 * 60.00008 * 9 7 6 34 34 H 1.08998 * 109.46881 * 299.99562 * 9 7 6 35 35 H 1.08000 * 119.93240 * 0.02562 * 11 10 9 36 36 H 1.07995 * 119.96948 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.03313 * 180.27846 * 13 12 11 38 38 H 0.97007 * 120.00011 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.04025 * 0.02562 * 24 10 9 40 40 H 1.09003 * 110.48679 * 143.50032 * 25 4 2 41 41 H 1.09003 * 110.48761 * 266.14068 * 25 4 2 42 42 H 1.09002 * 109.46514 * 0.03179 * 29 28 26 43 43 H 1.09005 * 109.46816 * 120.02693 * 29 28 26 44 44 H 1.08996 * 109.47237 * 240.03229 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0647 -0.7675 1.2294 5 1 1.3312 -0.7720 2.0357 6 8 3.3266 -0.2099 1.6817 7 6 3.6295 -0.3619 2.9805 8 8 2.8651 -0.9413 3.7153 9 6 4.9229 0.1902 3.5222 10 6 5.0197 -0.1116 4.9956 11 6 4.5171 0.7869 5.9193 12 6 4.6035 0.5135 7.2721 13 6 5.1879 -0.6609 7.7047 14 6 5.6981 -1.5625 6.7800 15 8 6.2771 -2.7154 7.2023 16 6 6.2284 -2.9764 8.5242 17 1 5.8176 -2.2450 9.2043 18 6 6.7058 -4.1840 9.0105 19 7 7.2067 -5.0749 8.1822 20 14 6.6377 -4.5459 10.8419 21 1 7.2062 -5.8929 11.1017 22 1 7.4268 -3.5257 11.5777 23 1 5.2263 -4.5066 11.3020 24 6 5.6097 -1.2848 5.4219 25 6 2.2624 -2.1888 0.6533 26 6 2.4512 -1.9646 -0.8309 27 8 2.9088 -2.7794 -1.6039 28 7 2.0385 -0.7306 -1.1681 29 6 2.0896 -0.1843 -2.5266 30 1 -0.3633 0.4828 0.9072 31 1 -0.3633 0.5443 -0.8717 32 1 -0.3633 -1.0270 -0.0355 33 1 4.9494 1.2691 3.3702 34 1 5.7615 -0.2711 3.0007 35 1 4.0553 1.7036 5.5833 36 1 4.2106 1.2172 7.9909 37 1 5.2511 -0.8760 8.7612 38 1 7.2417 -4.8871 7.2311 39 1 6.0020 -1.9860 4.7003 40 1 3.1482 -2.6554 1.0843 41 1 1.3797 -2.8013 0.8373 42 1 2.5083 -0.9300 -3.2024 43 1 1.0822 0.0758 -2.8517 44 1 2.7161 0.7075 -2.5363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810877525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:16 Heat of formation + Delta-G solvation = -120.778413 kcal Electronic energy + Delta-G solvation = -27874.123480 eV Core-core repulsion = 23757.451128 eV Total energy + Delta-G solvation = -4116.672352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35261 -40.13856 -39.07990 -37.40773 -36.72153 -36.01457 -32.91175 -32.45271 -32.05677 -30.77189 -29.30720 -27.71629 -26.77991 -25.49001 -24.79110 -22.42431 -21.76603 -21.40427 -20.53187 -19.82899 -18.09812 -17.98917 -17.31907 -16.92222 -16.49588 -16.38584 -15.96902 -15.47085 -15.13840 -15.01392 -14.33372 -14.09529 -13.92197 -13.91014 -13.72296 -13.63351 -13.42462 -13.17111 -12.99205 -12.90932 -12.82365 -12.57094 -12.30135 -12.13480 -11.89391 -11.59502 -11.34296 -11.14032 -10.95171 -10.92943 -10.80934 -10.46832 -10.30969 -10.29440 -10.08656 -9.44490 -9.18005 -8.78877 -8.22775 -7.34482 -6.77241 -4.06847 1.81678 2.17093 2.24646 2.27554 2.50254 2.62549 3.23735 3.28817 3.45427 3.79733 3.89763 4.10733 4.22322 4.38760 4.55081 4.66071 4.71735 4.81609 4.89238 4.94640 5.02589 5.06727 5.10962 5.14784 5.19095 5.29192 5.33514 5.36871 5.46522 5.51956 5.60440 5.63701 5.79943 6.06395 6.08851 6.20961 6.25016 6.52843 6.68152 6.77003 7.03249 7.13265 7.27331 7.53944 7.65414 7.71563 7.81945 8.39434 8.91571 9.59863 10.66772 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002334 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.404164 B =11995.221405 C =12834.376171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 H 0.102 0.898 4 C 0.078 3.922 5 H 0.118 0.882 6 O -0.350 6.350 7 C 0.461 3.539 8 O -0.483 6.483 9 C -0.064 4.064 10 C -0.045 4.045 11 C -0.193 4.193 12 C -0.074 4.074 13 C -0.223 4.223 14 C 0.157 3.843 15 O -0.202 6.202 16 C -0.472 4.472 17 H 0.084 0.916 18 C 0.010 3.990 19 N -0.881 5.881 20 Si 1.096 2.904 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.174 4.174 25 C -0.172 4.172 26 C 0.524 3.476 27 O -0.528 6.528 28 N -0.619 5.619 29 C 0.094 3.906 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.282 0.718 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 14.742 -16.108 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.120 0.880 4 C 0.022 3.978 5 H 0.136 0.864 6 O -0.268 6.268 7 C 0.302 3.698 8 O -0.368 6.368 9 C -0.101 4.101 10 C -0.045 4.045 11 C -0.212 4.212 12 C -0.092 4.092 13 C -0.242 4.242 14 C 0.104 3.896 15 O -0.106 6.106 16 C -0.548 4.548 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.512 5.512 20 Si 0.920 3.080 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.193 4.193 25 C -0.212 4.212 26 C 0.312 3.688 27 O -0.404 6.404 28 N -0.354 5.354 29 C -0.047 4.047 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.765 12.756 -15.356 23.172 hybrid contribution -0.599 1.303 -1.058 1.782 sum -12.364 14.059 -16.414 24.898 Atomic orbital electron populations 1.22138 0.92889 1.03405 1.03473 1.21718 0.94638 0.97341 0.83207 0.87981 1.23560 0.85684 0.92053 0.96518 0.86419 1.86601 1.39029 1.72723 1.28419 1.23944 0.88970 0.77332 0.79517 1.90730 1.49877 1.37994 1.58161 1.20279 0.92645 1.03166 0.94002 1.18639 0.99370 0.94795 0.91699 1.20379 1.07425 1.00415 0.93022 1.20710 0.97450 0.95981 0.95070 1.21227 1.06571 0.96045 1.00404 1.19107 0.91032 0.87097 0.92412 1.83664 1.65837 1.33709 1.27417 1.22200 1.47043 1.05779 0.79793 0.89871 1.26545 0.94407 0.90329 1.08258 1.70572 1.39062 1.35419 1.06180 0.83110 0.77026 0.77090 0.70804 1.19769 1.20722 1.20724 1.19948 1.07803 0.98262 0.93325 1.22815 1.06766 0.97826 0.93752 1.20745 0.76300 0.81311 0.90478 1.90739 1.45069 1.47454 1.57177 1.48213 1.63059 1.15339 1.08797 1.21573 1.01818 0.99772 0.81584 0.90424 0.91112 0.91606 0.86991 0.86984 0.87616 0.87182 0.85370 0.90787 0.86780 0.86908 0.86077 0.89793 0.92000 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.46 37.16 0.35 -0.43 16 2 C 0.13 0.94 3.47 -66.96 -0.23 0.71 16 3 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 4 C 0.08 0.73 2.99 -25.10 -0.08 0.65 16 5 H 0.12 1.08 6.98 -51.93 -0.36 0.71 16 6 O -0.35 -3.94 10.00 -39.24 -0.39 -4.33 16 7 C 0.46 6.24 7.95 36.01 0.29 6.52 16 8 O -0.48 -8.23 15.28 -18.75 -0.29 -8.52 16 9 C -0.06 -0.80 5.94 -29.03 -0.17 -0.97 16 10 C -0.04 -0.77 4.37 -104.65 -0.46 -1.23 16 11 C -0.19 -3.26 9.70 -39.53 -0.38 -3.64 16 12 C -0.07 -1.35 10.04 -39.61 -0.40 -1.75 16 13 C -0.22 -4.91 9.17 -39.39 -0.36 -5.28 16 14 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 15 O -0.20 -5.73 9.16 0.04 0.00 -5.73 16 16 C -0.47 -13.39 9.49 30.89 0.29 -13.09 16 17 H 0.08 2.21 5.20 -52.49 -0.27 1.94 16 18 C 0.01 0.28 5.49 -17.52 -0.10 0.19 16 19 N -0.88 -26.53 13.70 55.48 0.76 -25.77 16 20 Si 1.10 23.82 29.92 -169.99 -5.09 18.73 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.64 9.65 -39.40 -0.38 -4.02 16 25 C -0.17 -1.78 6.62 -26.74 -0.18 -1.95 16 26 C 0.52 6.26 8.02 -10.86 -0.09 6.17 16 27 O -0.53 -8.37 17.35 5.56 0.10 -8.28 16 28 N -0.62 -5.48 2.98 -172.62 -0.51 -5.99 16 29 C 0.09 0.62 11.14 59.85 0.67 1.28 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 38 H 0.28 8.70 7.97 -40.82 -0.33 8.37 16 39 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.11 1.33 8.11 -51.93 -0.42 0.91 16 41 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.66 7.53 -51.93 -0.39 0.27 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -35.96 378.59 -7.13 -43.09 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.93 Total: 4.39 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.48 Total: -13.29 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.25 Total: -31.76 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.58 Total: -26.86 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.96 -7.13 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810877525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.693 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds