Wall clock time and date at job start Tue Mar 31 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 5 5 C 1.34225 * 117.00211 * 270.00418 * 4 2 1 6 6 O 1.20825 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99598 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.46817 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47134 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99606 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99893 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99812 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47519 * 89.99944 * 13 11 9 15 15 H 1.48505 * 109.47165 * 209.99981 * 13 11 9 16 16 H 1.48500 * 109.47363 * 330.00009 * 13 11 9 17 17 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 18 18 O 1.21277 * 120.00325 * 245.00371 * 17 2 1 19 19 N 1.34774 * 119.99710 * 64.99874 * 17 2 1 20 20 C 1.46505 * 120.00004 * 180.02562 * 19 17 2 21 21 C 1.50698 * 109.47186 * 180.02562 * 20 19 17 22 22 O 1.21256 * 120.00031 * 0.02562 * 21 20 19 23 23 C 1.47168 * 120.00137 * 180.02562 * 21 20 19 24 24 C 1.39859 * 120.16997 * 359.72122 * 23 21 20 25 25 C 1.37883 * 119.82122 * 179.74400 * 24 23 21 26 26 C 1.38402 * 120.17723 * 0.53492 * 25 24 23 27 27 C 1.38403 * 120.34463 * 359.72065 * 26 25 24 28 28 C 1.37886 * 120.17536 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.08995 * 109.47275 * 300.00351 * 7 5 4 33 33 H 1.09004 * 109.46810 * 60.00330 * 7 5 4 34 34 H 1.08995 * 109.47788 * 300.00408 * 8 7 5 35 35 H 1.09004 * 109.46858 * 60.00730 * 8 7 5 36 36 H 0.96998 * 119.99715 * 180.02562 * 12 11 9 37 37 H 0.96997 * 120.00628 * 0.02562 * 19 17 2 38 38 H 1.09001 * 109.47078 * 300.00148 * 20 19 17 39 39 H 1.09000 * 109.46842 * 60.00048 * 20 19 17 40 40 H 1.08002 * 120.08272 * 359.97438 * 24 23 21 41 41 H 1.08001 * 119.91129 * 180.27521 * 25 24 23 42 42 H 1.07996 * 119.82688 * 179.69793 * 26 25 24 43 43 H 1.08004 * 119.91469 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.08898 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9981 1.2520 2.2504 7 6 2.7182 -0.5771 3.5496 8 6 2.8635 0.4892 4.6371 9 6 3.3652 -0.1519 5.9053 10 1 3.5613 -1.2136 5.9327 11 6 3.5739 0.6170 7.0306 12 7 3.3346 1.9098 6.9974 13 14 4.1965 -0.1775 8.6024 14 1 5.6812 -0.1543 8.6144 15 1 3.6802 0.5735 9.7749 16 1 3.7230 -1.5835 8.6675 17 6 2.0324 -0.7104 -1.2304 18 8 2.6530 -1.7467 -1.1214 19 7 1.7919 -0.1942 -2.4519 20 6 2.2799 -0.8851 -3.6481 21 6 1.8818 -0.1065 -4.8754 22 8 1.2531 0.9241 -4.7621 23 6 2.2562 -0.5969 -6.2115 24 6 2.9864 -1.7821 -6.3461 25 6 3.3288 -2.2377 -7.6016 26 6 2.9613 -1.5198 -8.7264 27 6 2.2433 -0.3433 -8.6012 28 6 1.8888 0.1229 -7.3529 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.0088 -1.3368 3.8775 33 1 3.6872 -1.0407 3.3640 34 1 3.5731 1.2486 4.3090 35 1 1.8947 0.9531 4.8227 36 1 3.4818 2.4507 7.7889 37 1 1.2959 0.6347 -2.5392 38 1 3.3662 -0.9637 -3.6046 39 1 1.8448 -1.8835 -3.6938 40 1 3.2780 -2.3408 -5.4691 41 1 3.8888 -3.1551 -7.7075 42 1 3.2367 -1.8794 -9.7068 43 1 1.9598 0.2112 -9.4837 44 1 1.3288 1.0414 -7.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:07 Heat of formation + Delta-G solvation = -140.706346 kcal Electronic energy + Delta-G solvation = -26629.038264 eV Core-core repulsion = 22511.501773 eV Total energy + Delta-G solvation = -4117.536492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94620 -40.36523 -39.36886 -38.64008 -36.20988 -34.87261 -33.58604 -32.57413 -31.93284 -31.55685 -30.95649 -28.42833 -26.18546 -24.90849 -23.96325 -23.00105 -22.14219 -20.75599 -20.46429 -19.79656 -18.17465 -17.64376 -17.52273 -16.53098 -16.33914 -16.20936 -16.07744 -15.79417 -15.71431 -15.06614 -14.83794 -14.76345 -14.45710 -14.21004 -14.06786 -13.72930 -13.55838 -13.23562 -13.03486 -12.81405 -12.50368 -12.31210 -12.30162 -12.16038 -11.69255 -11.63136 -11.20212 -10.94809 -10.67519 -10.60650 -10.45164 -10.04019 -9.99429 -9.89757 -9.65402 -9.60153 -9.55431 -9.51538 -9.16722 -8.36432 -6.00410 -4.05055 0.02606 0.76845 1.76243 2.26854 2.33404 2.78082 3.19962 3.20366 3.33232 3.39194 3.41822 3.45431 4.15463 4.32799 4.37683 4.41868 4.45782 4.58035 4.75198 4.77411 4.81945 4.85780 4.89926 4.94704 5.18562 5.20778 5.35188 5.37994 5.54933 5.63701 5.67657 5.74599 5.83885 5.91770 5.94885 6.14324 6.21950 6.25800 6.59159 6.80699 6.89168 7.07588 7.67468 7.74016 7.87369 7.98908 8.22968 8.39201 9.01881 9.58975 11.10599 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032833 B = 0.001623 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.604900 B =17243.061768 C =17632.397767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 H 0.110 0.890 4 O -0.337 6.337 5 C 0.458 3.542 6 O -0.504 6.504 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.524 3.476 18 O -0.513 6.513 19 N -0.725 5.725 20 C 0.076 3.924 21 C 0.395 3.605 22 O -0.445 6.445 23 C -0.170 4.170 24 C -0.071 4.071 25 C -0.132 4.132 26 C -0.085 4.085 27 C -0.134 4.134 28 C -0.058 4.058 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.411 0.589 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -7.090 -34.036 34.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.008 3.992 3 H 0.128 0.872 4 O -0.254 6.254 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.139 4.139 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.309 3.691 18 O -0.387 6.387 19 N -0.383 5.383 20 C -0.049 4.049 21 C 0.272 3.728 22 O -0.320 6.320 23 C -0.171 4.171 24 C -0.089 4.089 25 C -0.150 4.150 26 C -0.103 4.103 27 C -0.151 4.151 28 C -0.076 4.076 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.813 -6.772 -33.792 34.674 hybrid contribution 0.154 0.123 0.626 0.657 sum -3.659 -6.650 -33.165 34.023 Atomic orbital electron populations 1.22146 0.91943 1.03900 1.04159 1.22238 0.95957 0.97785 0.83200 0.87192 1.86732 1.77442 1.41961 1.19256 1.24966 0.73542 0.86403 0.84935 1.90626 1.47807 1.16876 1.83730 1.21796 1.01958 1.02032 0.88143 1.19034 0.98589 0.92447 0.90348 1.21162 1.45016 0.94777 0.95694 0.92247 1.25015 0.95472 0.94821 0.98994 1.69993 1.48300 1.05023 1.29494 0.86535 0.79021 0.79358 0.82721 1.20613 1.21203 1.19774 1.20297 0.79555 0.85382 0.83885 1.90743 1.38805 1.22789 1.86341 1.45635 1.59333 1.28875 1.04464 1.21588 1.02226 0.97498 0.83568 1.22515 0.76038 0.84487 0.89748 1.90541 1.30721 1.22081 1.88656 1.20290 1.04442 0.98228 0.94170 1.21561 0.94609 0.94172 0.98555 1.21207 1.00898 1.00640 0.92228 1.21510 0.95409 0.94245 0.99163 1.21204 0.99454 0.96992 0.97499 1.21448 0.95944 0.98738 0.91458 0.90902 0.90489 0.90142 0.88739 0.88721 0.95561 0.95517 0.92869 0.75133 0.87420 0.87408 0.84600 0.85027 0.85363 0.85181 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.50 37.16 0.35 -1.50 16 2 C 0.07 0.95 2.97 -27.89 -0.08 0.86 16 3 H 0.11 1.54 7.16 -51.93 -0.37 1.17 16 4 O -0.34 -5.98 9.42 -45.88 -0.43 -6.41 16 5 C 0.46 9.19 7.93 36.01 0.29 9.48 16 6 O -0.50 -11.25 15.20 -18.75 -0.29 -11.53 16 7 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 9 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 C 0.52 6.94 7.18 -10.99 -0.08 6.86 16 18 O -0.51 -8.51 16.51 -14.05 -0.23 -8.74 16 19 N -0.73 -7.09 5.49 -61.47 -0.34 -7.43 16 20 C 0.08 0.58 4.77 -5.19 -0.02 0.55 16 21 C 0.39 3.05 7.19 -30.69 -0.22 2.83 16 22 O -0.45 -4.49 15.66 5.58 0.09 -4.40 16 23 C -0.17 -1.13 5.87 -105.06 -0.62 -1.74 16 24 C -0.07 -0.36 9.47 -39.11 -0.37 -0.73 16 25 C -0.13 -0.57 10.03 -39.65 -0.40 -0.97 16 26 C -0.09 -0.35 10.04 -39.46 -0.40 -0.75 16 27 C -0.13 -0.64 10.03 -39.65 -0.40 -1.04 16 28 C -0.06 -0.37 9.60 -39.11 -0.38 -0.74 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.41 3.58 7.22 -40.82 -0.29 3.28 16 38 H 0.11 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.14 0.46 7.05 -52.49 -0.37 0.09 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 44 H 0.13 0.84 7.65 -52.49 -0.40 0.44 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -36.20 387.76 -8.68 -44.89 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.03 Total: -0.42 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.01 Total: -2.03 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.40 Total: -33.76 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.86 Total: -31.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.20 -8.68 -44.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.820 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds