Wall clock time and date at job start Tue Mar 31 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 5 5 C 1.34225 * 117.00211 * 270.00418 * 4 2 1 6 6 O 1.20825 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99598 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.46817 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47134 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99606 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99893 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99812 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47519 * 89.99944 * 13 11 9 15 15 H 1.48505 * 109.47165 * 209.99981 * 13 11 9 16 16 H 1.48500 * 109.47363 * 330.00009 * 13 11 9 17 17 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 18 18 O 1.21277 * 120.00325 * 245.00371 * 17 2 1 19 19 N 1.34774 * 119.99710 * 64.99874 * 17 2 1 20 20 C 1.46505 * 120.00004 * 180.02562 * 19 17 2 21 21 C 1.50698 * 109.47186 * 180.02562 * 20 19 17 22 22 O 1.21256 * 120.00031 * 0.02562 * 21 20 19 23 23 C 1.47168 * 120.00137 * 180.02562 * 21 20 19 24 24 C 1.39859 * 120.16997 * 359.72122 * 23 21 20 25 25 C 1.37883 * 119.82122 * 179.74400 * 24 23 21 26 26 C 1.38402 * 120.17723 * 0.53492 * 25 24 23 27 27 C 1.38403 * 120.34463 * 359.72065 * 26 25 24 28 28 C 1.37886 * 120.17536 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.08995 * 109.47275 * 300.00351 * 7 5 4 33 33 H 1.09004 * 109.46810 * 60.00330 * 7 5 4 34 34 H 1.08995 * 109.47788 * 300.00408 * 8 7 5 35 35 H 1.09004 * 109.46858 * 60.00730 * 8 7 5 36 36 H 0.96998 * 119.99715 * 180.02562 * 12 11 9 37 37 H 0.96997 * 120.00628 * 0.02562 * 19 17 2 38 38 H 1.09001 * 109.47078 * 300.00148 * 20 19 17 39 39 H 1.09000 * 109.46842 * 60.00048 * 20 19 17 40 40 H 1.08002 * 120.08272 * 359.97438 * 24 23 21 41 41 H 1.08001 * 119.91129 * 180.27521 * 25 24 23 42 42 H 1.07996 * 119.82688 * 179.69793 * 26 25 24 43 43 H 1.08004 * 119.91469 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.08898 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9981 1.2520 2.2504 7 6 2.7182 -0.5771 3.5496 8 6 2.8635 0.4892 4.6371 9 6 3.3652 -0.1519 5.9053 10 1 3.5613 -1.2136 5.9327 11 6 3.5739 0.6170 7.0306 12 7 3.3346 1.9098 6.9974 13 14 4.1965 -0.1775 8.6024 14 1 5.6812 -0.1543 8.6144 15 1 3.6802 0.5735 9.7749 16 1 3.7230 -1.5835 8.6675 17 6 2.0324 -0.7104 -1.2304 18 8 2.6530 -1.7467 -1.1214 19 7 1.7919 -0.1942 -2.4519 20 6 2.2799 -0.8851 -3.6481 21 6 1.8818 -0.1065 -4.8754 22 8 1.2531 0.9241 -4.7621 23 6 2.2562 -0.5969 -6.2115 24 6 2.9864 -1.7821 -6.3461 25 6 3.3288 -2.2377 -7.6016 26 6 2.9613 -1.5198 -8.7264 27 6 2.2433 -0.3433 -8.6012 28 6 1.8888 0.1229 -7.3529 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.0088 -1.3368 3.8775 33 1 3.6872 -1.0407 3.3640 34 1 3.5731 1.2486 4.3090 35 1 1.8947 0.9531 4.8227 36 1 3.4818 2.4507 7.7889 37 1 1.2959 0.6347 -2.5392 38 1 3.3662 -0.9637 -3.6046 39 1 1.8448 -1.8835 -3.6938 40 1 3.2780 -2.3408 -5.4691 41 1 3.8888 -3.1551 -7.7075 42 1 3.2367 -1.8794 -9.7068 43 1 1.9598 0.2112 -9.4837 44 1 1.3288 1.0414 -7.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:07 Heat of formation + Delta-G solvation = -162.703651 kcal Electronic energy + Delta-G solvation = -26629.992139 eV Core-core repulsion = 22511.501773 eV Total energy + Delta-G solvation = -4118.490366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98156 -41.36717 -40.41871 -39.20214 -37.70329 -35.80586 -35.65127 -33.60810 -32.97021 -32.45751 -31.91681 -29.13023 -28.11357 -25.95542 -24.73115 -23.91614 -23.30251 -21.79016 -21.44869 -21.03576 -19.25129 -19.01641 -18.36528 -18.08629 -17.50682 -17.16036 -16.96587 -16.84385 -16.56185 -16.46073 -15.97237 -15.85802 -15.25160 -15.15756 -14.94567 -14.52468 -14.41757 -14.30479 -14.23220 -14.06698 -13.68894 -13.45849 -13.42654 -13.25107 -12.84624 -12.75165 -12.65025 -12.51040 -12.04419 -12.02739 -11.95504 -11.75413 -11.50402 -11.29412 -11.14186 -10.93331 -10.57034 -10.44618 -9.98663 -9.96719 -8.19566 -6.33067 -0.43262 0.41109 1.09584 1.21978 1.24904 1.29948 1.44420 1.46180 1.57499 2.09707 2.44192 2.76016 2.81836 3.14330 3.37838 3.68201 3.74991 3.80319 3.88188 3.99147 4.05899 4.22928 4.23799 4.30637 4.38943 4.43463 4.45160 4.50574 4.57234 4.58590 4.85972 4.88985 4.99605 5.04722 5.05728 5.26696 5.30927 5.44220 5.47140 5.50199 5.55326 5.80699 5.92678 6.13186 6.16089 6.23098 6.71358 6.84696 6.89451 7.36976 8.92935 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032833 B = 0.001623 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.604900 B =17243.061768 C =17632.397767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.056 3.944 3 H 0.109 0.891 4 O -0.338 6.338 5 C 0.468 3.532 6 O -0.534 6.534 7 C -0.094 4.094 8 C 0.039 3.961 9 C -0.546 4.546 10 H 0.076 0.924 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.257 1.257 17 C 0.531 3.469 18 O -0.549 6.549 19 N -0.711 5.711 20 C 0.072 3.928 21 C 0.403 3.597 22 O -0.477 6.477 23 C -0.188 4.188 24 C -0.073 4.073 25 C -0.137 4.137 26 C -0.084 4.084 27 C -0.140 4.140 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.112 0.888 34 H -0.009 1.009 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.417 0.583 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -9.363 -35.423 36.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 H 0.127 0.873 4 O -0.254 6.254 5 C 0.313 3.687 6 O -0.423 6.423 7 C -0.132 4.132 8 C 0.002 3.998 9 C -0.583 4.583 10 H 0.094 0.906 11 C -0.200 4.200 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.181 1.181 17 C 0.316 3.684 18 O -0.426 6.426 19 N -0.367 5.367 20 C -0.051 4.051 21 C 0.283 3.717 22 O -0.354 6.354 23 C -0.190 4.190 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.101 4.101 27 C -0.158 4.158 28 C -0.093 4.093 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.383 -9.061 -35.236 36.540 hybrid contribution 0.005 0.838 0.861 1.201 sum -3.378 -8.224 -34.376 35.507 Atomic orbital electron populations 1.22157 0.89690 1.04612 1.05115 1.22633 0.97839 0.97550 0.82177 0.87289 1.86661 1.77231 1.41832 1.19721 1.24589 0.72956 0.85776 0.85423 1.90617 1.49226 1.18094 1.84367 1.21543 1.03759 1.00553 0.87310 1.18806 0.95725 0.93081 0.92190 1.21640 1.44688 0.95687 0.96325 0.90596 1.26068 0.95540 0.95288 1.03118 1.70152 1.49633 1.06875 1.30720 0.85319 0.78511 0.78851 0.77564 1.19790 1.21041 1.18082 1.20048 0.79177 0.84808 0.84372 1.90730 1.40699 1.24317 1.86835 1.45535 1.58271 1.28795 1.04125 1.21819 1.02957 0.97958 0.82411 1.22619 0.75045 0.83762 0.90246 1.90533 1.32445 1.23389 1.88987 1.20271 1.05928 0.99329 0.93437 1.21794 0.93989 0.93595 0.99736 1.21555 1.00641 1.01372 0.91887 1.21878 0.94257 0.93610 1.00403 1.21458 0.99346 0.97520 0.97431 1.21550 0.96605 0.98861 0.92306 0.90272 0.87311 0.91409 0.86499 0.86951 0.99030 0.98718 0.92745 0.74386 0.86377 0.85793 0.83081 0.82834 0.82914 0.83511 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.50 71.98 0.68 -2.73 16 2 C 0.06 1.56 2.97 29.85 0.09 1.65 16 3 H 0.11 3.06 7.16 -2.39 -0.02 3.04 16 4 O -0.34 -11.88 9.42 -45.03 -0.42 -12.30 16 5 C 0.47 18.95 7.93 71.24 0.56 19.51 16 6 O -0.53 -24.55 15.20 21.97 0.33 -24.22 16 7 C -0.09 -3.95 5.75 29.85 0.17 -3.78 16 8 C 0.04 2.15 4.26 29.85 0.13 2.27 16 9 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 10 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 11 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 12 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 13 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 C 0.53 13.58 7.18 87.66 0.63 14.21 16 18 O -0.55 -17.72 16.51 15.73 0.26 -17.46 16 19 N -0.71 -13.09 5.49 -466.79 -2.56 -15.65 16 20 C 0.07 1.00 4.77 85.63 0.41 1.41 16 21 C 0.40 6.00 7.19 28.03 0.20 6.20 16 22 O -0.48 -9.61 15.66 -2.95 -0.05 -9.66 16 23 C -0.19 -2.35 5.87 -20.15 -0.12 -2.47 16 24 C -0.07 -0.61 9.47 22.58 0.21 -0.40 16 25 C -0.14 -0.85 10.03 22.22 0.22 -0.63 16 26 C -0.08 -0.49 10.04 22.35 0.22 -0.27 16 27 C -0.14 -1.15 10.03 22.23 0.22 -0.93 16 28 C -0.07 -0.93 9.60 22.58 0.22 -0.71 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 1.63 7.93 -2.39 -0.02 1.61 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 33 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 34 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 35 H -0.01 -0.34 8.10 -2.39 -0.02 -0.36 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.42 6.83 7.22 -92.71 -0.67 6.17 16 38 H 0.12 1.47 8.08 -2.39 -0.02 1.45 16 39 H 0.12 1.39 8.09 -2.39 -0.02 1.37 16 40 H 0.15 0.70 7.05 -2.91 -0.02 0.68 16 41 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 43 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.13 1.67 7.65 -2.91 -0.02 1.64 16 Total: -1.00 -79.84 387.76 4.78 -75.06 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.35 Total: 12.91 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.55 Total: 3.08 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.28 Total: -73.54 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: 0.12 Total: -63.64 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -79.84 4.78 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.643 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds