Wall clock time and date at job start Tue Mar 31 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 240.00348 * 2 1 3 5 5 C 1.34230 * 117.00173 * 90.00111 * 4 2 1 6 6 O 1.20818 * 119.99983 * 0.27497 * 5 4 2 7 7 C 1.50706 * 119.99763 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.46573 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46691 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99592 * 13 11 9 16 16 H 1.48497 * 109.47025 * 239.99950 * 13 11 9 17 17 C 1.50699 * 109.47262 * 119.99917 * 2 1 3 18 18 O 1.21282 * 119.99816 * 119.99625 * 17 2 1 19 19 N 1.34767 * 120.00284 * 300.00523 * 17 2 1 20 20 C 1.46506 * 120.00325 * 179.97438 * 19 17 2 21 21 C 1.50700 * 109.47265 * 179.97438 * 20 19 17 22 22 O 1.21251 * 119.99763 * 0.02562 * 21 20 19 23 23 C 1.47161 * 120.00036 * 180.02562 * 21 20 19 24 24 C 1.39857 * 120.17198 * 359.72572 * 23 21 20 25 25 C 1.37882 * 119.82639 * 179.69593 * 24 23 21 26 26 C 1.38409 * 120.17044 * 0.58011 * 25 24 23 27 27 C 1.38397 * 120.34846 * 359.71917 * 26 25 24 28 28 C 1.37889 * 120.17438 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47453 * 299.99844 * 1 2 3 31 31 H 1.09000 * 109.47267 * 59.99398 * 1 2 3 32 32 H 1.09000 * 109.47161 * 299.99883 * 7 5 4 33 33 H 1.09001 * 109.46740 * 60.00026 * 7 5 4 34 34 H 1.09000 * 109.47486 * 299.99934 * 8 7 5 35 35 H 1.09001 * 109.47362 * 60.00657 * 8 7 5 36 36 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 37 37 H 0.97000 * 120.00011 * 359.97438 * 19 17 2 38 38 H 1.08995 * 109.47030 * 300.00356 * 20 19 17 39 39 H 1.09002 * 109.46874 * 59.99898 * 20 19 17 40 40 H 1.08000 * 120.08636 * 0.02562 * 24 23 21 41 41 H 1.08005 * 119.91865 * 180.32129 * 25 24 23 42 42 H 1.08000 * 119.82414 * 179.69094 * 26 25 24 43 43 H 1.07998 * 119.91368 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.08893 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 2.0025 1.2527 -2.2490 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4892 -4.6371 9 6 3.3660 -0.1517 -5.9051 10 1 3.5628 -1.2133 -5.9323 11 6 3.5748 0.6171 -7.0303 12 7 3.3347 1.9097 -6.9974 13 14 4.1987 -0.1771 -8.6017 14 1 4.3886 -1.6330 -8.3788 15 1 3.2087 0.0317 -9.6887 16 1 5.4941 0.4383 -8.9869 17 6 2.0323 -0.7104 1.2305 18 8 2.7295 -1.6965 1.1191 19 7 1.7067 -0.2500 2.4545 20 6 2.1946 -0.9410 3.6507 21 6 1.6928 -0.2302 4.8812 22 8 0.9960 0.7558 4.7699 23 6 2.0485 -0.7329 6.2178 24 6 2.8473 -1.8732 6.3503 25 6 3.1814 -2.3344 7.6060 26 6 2.7186 -1.6788 8.7337 27 6 1.9226 -0.5533 8.6110 28 6 1.5849 -0.0761 7.3621 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.6884 -1.0399 -3.3632 33 1 2.0104 -1.3372 -3.8773 34 1 1.8939 0.9518 -4.8231 35 1 3.5719 1.2496 -4.3092 36 1 3.4812 2.4507 -7.7891 37 1 1.1493 0.5388 2.5436 38 1 1.8310 -1.9685 3.6505 39 1 3.2846 -0.9413 3.6509 40 1 3.2059 -2.3882 5.4713 41 1 3.8025 -3.2118 7.7100 42 1 2.9796 -2.0477 9.7146 43 1 1.5649 -0.0475 9.4956 44 1 0.9639 0.8025 7.2679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:11 Heat of formation + Delta-G solvation = -140.621459 kcal Electronic energy + Delta-G solvation = -26628.769938 eV Core-core repulsion = 22511.237128 eV Total energy + Delta-G solvation = -4117.532811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94957 -40.36615 -39.36912 -38.64115 -36.20979 -34.88249 -33.58616 -32.58697 -31.92804 -31.55765 -30.95738 -28.40731 -26.18616 -24.90914 -23.97427 -23.00341 -22.14727 -20.74788 -20.46701 -19.80025 -18.17396 -17.64941 -17.52630 -16.53620 -16.34623 -16.20216 -16.07957 -15.79201 -15.71314 -15.06150 -14.84539 -14.76632 -14.45331 -14.21089 -14.06942 -13.73635 -13.54776 -13.23219 -13.03766 -12.81785 -12.51758 -12.31361 -12.30534 -12.16206 -11.69412 -11.62443 -11.19830 -10.96659 -10.66685 -10.59355 -10.45332 -10.04529 -9.99536 -9.89567 -9.65527 -9.60275 -9.55714 -9.51560 -9.15164 -8.36880 -6.00562 -4.05142 0.02438 0.76701 1.76082 2.26650 2.33932 2.78476 3.19853 3.20283 3.32207 3.39337 3.42496 3.45529 4.15328 4.32669 4.37530 4.41730 4.45760 4.57831 4.74515 4.77293 4.81900 4.85652 4.89658 4.95124 5.17774 5.20641 5.35133 5.37858 5.54467 5.63873 5.67517 5.74489 5.83750 5.91692 5.94690 6.14395 6.22095 6.25657 6.59335 6.80494 6.89295 7.07471 7.67736 7.74016 7.87439 7.98880 8.23002 8.39229 9.02060 9.58982 11.10496 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.001618 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.955847 B =17299.653730 C =17730.951110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 H 0.112 0.888 4 O -0.337 6.337 5 C 0.458 3.542 6 O -0.504 6.504 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.523 3.477 18 O -0.513 6.513 19 N -0.725 5.725 20 C 0.075 3.925 21 C 0.395 3.605 22 O -0.445 6.445 23 C -0.170 4.170 24 C -0.071 4.071 25 C -0.132 4.132 26 C -0.085 4.085 27 C -0.134 4.134 28 C -0.058 4.058 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.411 0.589 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -7.412 34.056 35.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 H 0.129 0.871 4 O -0.254 6.254 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.139 4.139 8 C -0.005 4.005 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.309 3.691 18 O -0.387 6.387 19 N -0.383 5.383 20 C -0.049 4.049 21 C 0.272 3.728 22 O -0.320 6.320 23 C -0.171 4.171 24 C -0.089 4.089 25 C -0.150 4.150 26 C -0.103 4.103 27 C -0.152 4.152 28 C -0.076 4.076 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.256 -7.085 33.815 34.810 hybrid contribution 0.112 0.116 -0.632 0.652 sum -4.144 -6.968 33.183 34.159 Atomic orbital electron populations 1.22157 0.92022 1.03885 1.04155 1.22239 0.95887 0.97848 0.83216 0.87075 1.86728 1.77454 1.41974 1.19237 1.24962 0.73507 0.86414 0.84938 1.90624 1.47868 1.16825 1.83727 1.21796 1.01946 1.02030 0.88151 1.19042 0.98593 0.92463 0.90361 1.21200 1.44863 0.94817 0.95682 0.92189 1.25017 0.95488 0.94812 0.99007 1.70001 1.48436 1.05033 1.29352 0.86482 0.78474 0.79536 0.83185 1.19620 1.20985 1.20980 1.20298 0.80223 0.84710 0.83889 1.90746 1.36280 1.25258 1.86419 1.45637 1.55197 1.33203 1.04267 1.21588 1.01778 0.97988 0.83535 1.22511 0.77220 0.83241 0.89801 1.90539 1.29632 1.23027 1.88817 1.20288 1.03691 0.99017 0.94137 1.21560 0.94671 0.94081 0.98582 1.21210 1.00801 1.00753 0.92207 1.21512 0.95145 0.94511 0.99158 1.21202 0.99242 0.97203 0.97504 1.21449 0.96258 0.98437 0.91443 0.90908 0.90498 0.90152 0.88693 0.88764 0.95525 0.95540 0.92923 0.75133 0.87401 0.87426 0.84600 0.85023 0.85364 0.85182 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.44 37.15 0.35 -1.50 16 2 C 0.07 0.95 2.98 -27.89 -0.08 0.86 16 3 H 0.11 1.56 7.15 -51.93 -0.37 1.19 16 4 O -0.34 -5.98 9.41 -45.90 -0.43 -6.41 16 5 C 0.46 9.20 7.93 36.01 0.29 9.49 16 6 O -0.50 -11.26 15.20 -18.74 -0.28 -11.54 16 7 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 8 C 0.03 0.86 4.26 -27.88 -0.12 0.75 16 9 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C 0.52 6.94 7.23 -10.99 -0.08 6.86 16 18 O -0.51 -8.53 16.50 -14.10 -0.23 -8.77 16 19 N -0.73 -7.06 5.42 -61.47 -0.33 -7.40 16 20 C 0.08 0.57 4.77 -5.19 -0.02 0.55 16 21 C 0.39 3.03 7.19 -30.69 -0.22 2.81 16 22 O -0.45 -4.47 15.66 5.58 0.09 -4.38 16 23 C -0.17 -1.12 5.87 -105.07 -0.62 -1.74 16 24 C -0.07 -0.36 9.47 -39.11 -0.37 -0.73 16 25 C -0.13 -0.57 10.03 -39.65 -0.40 -0.97 16 26 C -0.09 -0.35 10.04 -39.46 -0.40 -0.75 16 27 C -0.13 -0.64 10.03 -39.65 -0.40 -1.04 16 28 C -0.06 -0.36 9.60 -39.11 -0.38 -0.74 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.64 7.56 -51.93 -0.39 0.25 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.41 3.55 6.86 -40.82 -0.28 3.27 16 38 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.14 0.46 7.05 -52.49 -0.37 0.09 16 41 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 44 H 0.13 0.83 7.65 -52.49 -0.40 0.43 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -36.25 386.95 -8.66 -44.91 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.00 Total: -0.46 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.02 Total: -2.02 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.40 Total: -33.74 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.86 Total: -31.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.25 -8.66 -44.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.709 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds