Wall clock time and date at job start Tue Mar 31 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 240.00348 * 2 1 3 5 5 C 1.34230 * 117.00173 * 90.00111 * 4 2 1 6 6 O 1.20818 * 119.99983 * 0.27497 * 5 4 2 7 7 C 1.50706 * 119.99763 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.46573 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46691 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99592 * 13 11 9 16 16 H 1.48497 * 109.47025 * 239.99950 * 13 11 9 17 17 C 1.50699 * 109.47262 * 119.99917 * 2 1 3 18 18 O 1.21282 * 119.99816 * 119.99625 * 17 2 1 19 19 N 1.34767 * 120.00284 * 300.00523 * 17 2 1 20 20 C 1.46506 * 120.00325 * 179.97438 * 19 17 2 21 21 C 1.50700 * 109.47265 * 179.97438 * 20 19 17 22 22 O 1.21251 * 119.99763 * 0.02562 * 21 20 19 23 23 C 1.47161 * 120.00036 * 180.02562 * 21 20 19 24 24 C 1.39857 * 120.17198 * 359.72572 * 23 21 20 25 25 C 1.37882 * 119.82639 * 179.69593 * 24 23 21 26 26 C 1.38409 * 120.17044 * 0.58011 * 25 24 23 27 27 C 1.38397 * 120.34846 * 359.71917 * 26 25 24 28 28 C 1.37889 * 120.17438 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47453 * 299.99844 * 1 2 3 31 31 H 1.09000 * 109.47267 * 59.99398 * 1 2 3 32 32 H 1.09000 * 109.47161 * 299.99883 * 7 5 4 33 33 H 1.09001 * 109.46740 * 60.00026 * 7 5 4 34 34 H 1.09000 * 109.47486 * 299.99934 * 8 7 5 35 35 H 1.09001 * 109.47362 * 60.00657 * 8 7 5 36 36 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 37 37 H 0.97000 * 120.00011 * 359.97438 * 19 17 2 38 38 H 1.08995 * 109.47030 * 300.00356 * 20 19 17 39 39 H 1.09002 * 109.46874 * 59.99898 * 20 19 17 40 40 H 1.08000 * 120.08636 * 0.02562 * 24 23 21 41 41 H 1.08005 * 119.91865 * 180.32129 * 25 24 23 42 42 H 1.08000 * 119.82414 * 179.69094 * 26 25 24 43 43 H 1.07998 * 119.91368 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.08893 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 2.0025 1.2527 -2.2490 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4892 -4.6371 9 6 3.3660 -0.1517 -5.9051 10 1 3.5628 -1.2133 -5.9323 11 6 3.5748 0.6171 -7.0303 12 7 3.3347 1.9097 -6.9974 13 14 4.1987 -0.1771 -8.6017 14 1 4.3886 -1.6330 -8.3788 15 1 3.2087 0.0317 -9.6887 16 1 5.4941 0.4383 -8.9869 17 6 2.0323 -0.7104 1.2305 18 8 2.7295 -1.6965 1.1191 19 7 1.7067 -0.2500 2.4545 20 6 2.1946 -0.9410 3.6507 21 6 1.6928 -0.2302 4.8812 22 8 0.9960 0.7558 4.7699 23 6 2.0485 -0.7329 6.2178 24 6 2.8473 -1.8732 6.3503 25 6 3.1814 -2.3344 7.6060 26 6 2.7186 -1.6788 8.7337 27 6 1.9226 -0.5533 8.6110 28 6 1.5849 -0.0761 7.3621 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.6884 -1.0399 -3.3632 33 1 2.0104 -1.3372 -3.8773 34 1 1.8939 0.9518 -4.8231 35 1 3.5719 1.2496 -4.3092 36 1 3.4812 2.4507 -7.7891 37 1 1.1493 0.5388 2.5436 38 1 1.8310 -1.9685 3.6505 39 1 3.2846 -0.9413 3.6509 40 1 3.2059 -2.3882 5.4713 41 1 3.8025 -3.2118 7.7100 42 1 2.9796 -2.0477 9.7146 43 1 1.5649 -0.0475 9.4956 44 1 0.9639 0.8025 7.2679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:10 Heat of formation + Delta-G solvation = -162.622665 kcal Electronic energy + Delta-G solvation = -26629.723982 eV Core-core repulsion = 22511.237128 eV Total energy + Delta-G solvation = -4118.486855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98341 -41.36722 -40.41878 -39.20118 -37.70362 -35.81701 -35.65251 -33.61278 -32.97505 -32.44932 -31.91562 -29.10962 -28.11328 -25.96052 -24.73300 -23.92288 -23.30537 -21.78324 -21.44550 -21.04148 -19.25079 -19.02116 -18.36382 -18.09346 -17.51375 -17.15257 -16.95527 -16.85162 -16.56096 -16.45833 -15.98652 -15.84788 -15.24857 -15.15343 -14.94768 -14.52391 -14.42190 -14.30889 -14.22938 -14.06365 -13.69486 -13.45996 -13.43013 -13.24879 -12.86913 -12.74802 -12.64925 -12.48601 -12.04597 -12.02692 -11.96128 -11.75162 -11.50491 -11.27494 -11.14112 -10.93341 -10.58060 -10.44562 -9.98595 -9.96665 -8.19790 -6.33205 -0.43192 0.41163 1.09934 1.20798 1.25508 1.30904 1.44389 1.44757 1.58663 2.09537 2.44041 2.76085 2.81902 3.14208 3.37688 3.67957 3.74764 3.80459 3.88305 3.99218 4.05961 4.22998 4.23860 4.30753 4.38882 4.43522 4.45234 4.50628 4.57443 4.58437 4.86033 4.89084 4.99882 5.04774 5.05789 5.26846 5.30964 5.44261 5.47316 5.50265 5.55280 5.80737 5.92724 6.13154 6.16180 6.23146 6.71450 6.84817 6.89539 7.36908 8.92955 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.001618 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.955847 B =17299.653730 C =17730.951110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.056 3.944 3 H 0.110 0.890 4 O -0.338 6.338 5 C 0.468 3.532 6 O -0.534 6.534 7 C -0.094 4.094 8 C 0.039 3.961 9 C -0.544 4.544 10 H 0.076 0.924 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.255 1.255 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.531 3.469 18 O -0.550 6.550 19 N -0.710 5.710 20 C 0.072 3.928 21 C 0.404 3.596 22 O -0.476 6.476 23 C -0.188 4.188 24 C -0.073 4.073 25 C -0.137 4.137 26 C -0.084 4.084 27 C -0.140 4.140 28 C -0.075 4.075 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.117 0.883 34 H -0.006 1.006 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.418 0.582 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -9.676 35.447 36.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 H 0.128 0.872 4 O -0.254 6.254 5 C 0.313 3.687 6 O -0.423 6.423 7 C -0.132 4.132 8 C 0.002 3.998 9 C -0.582 4.582 10 H 0.094 0.906 11 C -0.200 4.200 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.178 1.178 15 H -0.205 1.205 16 H -0.206 1.206 17 C 0.316 3.684 18 O -0.427 6.427 19 N -0.367 5.367 20 C -0.052 4.052 21 C 0.283 3.717 22 O -0.353 6.353 23 C -0.190 4.190 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.102 4.102 27 C -0.158 4.158 28 C -0.093 4.093 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.855 -9.365 35.264 36.689 hybrid contribution -0.033 0.828 -0.868 1.200 sum -3.888 -8.537 34.396 35.652 Atomic orbital electron populations 1.22168 0.89703 1.04648 1.05111 1.22632 0.97805 0.97578 0.82188 0.87246 1.86657 1.77243 1.41839 1.19697 1.24586 0.72922 0.85788 0.85429 1.90615 1.49293 1.18047 1.84366 1.21543 1.03738 1.00560 0.87317 1.18814 0.95735 0.93091 0.92200 1.21668 1.44537 0.95693 0.96312 0.90589 1.26069 0.95566 0.95281 1.03124 1.70157 1.49751 1.06889 1.30626 0.85269 0.77685 0.79192 0.78086 1.17846 1.20515 1.20616 1.20053 0.79826 0.84137 0.84394 1.90733 1.38140 1.26877 1.86916 1.45533 1.54226 1.33022 1.03906 1.21819 1.02460 0.98494 0.82389 1.22611 0.76261 0.82493 0.90287 1.90530 1.31282 1.24379 1.89137 1.20269 1.05133 1.00153 0.93408 1.21793 0.94075 0.93496 0.99761 1.21557 1.00692 1.01340 0.91874 1.21878 0.94055 0.93823 1.00398 1.21457 0.99245 0.97606 0.97447 1.21551 0.96826 0.98649 0.92281 0.90203 0.87317 0.91426 0.86956 0.86489 0.98708 0.99024 0.92743 0.74364 0.85827 0.86372 0.83095 0.82845 0.82921 0.83507 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.44 71.98 0.68 -2.72 16 2 C 0.06 1.56 2.98 29.85 0.09 1.65 16 3 H 0.11 3.09 7.15 -2.38 -0.02 3.07 16 4 O -0.34 -11.87 9.41 -45.06 -0.42 -12.30 16 5 C 0.47 18.97 7.93 71.24 0.56 19.54 16 6 O -0.53 -24.59 15.20 21.99 0.33 -24.25 16 7 C -0.09 -3.95 5.75 29.85 0.17 -3.77 16 8 C 0.04 2.13 4.26 29.85 0.13 2.25 16 9 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 10 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 11 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 12 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 13 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 14 H -0.25 -10.77 7.11 99.48 0.71 -10.07 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.53 13.59 7.23 87.66 0.63 14.22 16 18 O -0.55 -17.82 16.50 15.76 0.26 -17.56 16 19 N -0.71 -13.02 5.42 -466.79 -2.53 -15.55 16 20 C 0.07 1.00 4.77 85.63 0.41 1.41 16 21 C 0.40 5.96 7.19 28.03 0.20 6.16 16 22 O -0.48 -9.52 15.66 -2.94 -0.05 -9.57 16 23 C -0.19 -2.34 5.87 -20.15 -0.12 -2.46 16 24 C -0.07 -0.61 9.47 22.58 0.21 -0.40 16 25 C -0.14 -0.85 10.03 22.23 0.22 -0.62 16 26 C -0.08 -0.49 10.04 22.35 0.22 -0.27 16 27 C -0.14 -1.14 10.03 22.22 0.22 -0.92 16 28 C -0.07 -0.92 9.60 22.58 0.22 -0.70 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.61 7.56 -2.39 -0.02 1.59 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 33 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 34 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 35 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.42 6.75 6.86 -92.71 -0.64 6.12 16 38 H 0.12 1.39 8.08 -2.39 -0.02 1.38 16 39 H 0.12 1.46 8.09 -2.39 -0.02 1.44 16 40 H 0.15 0.70 7.05 -2.91 -0.02 0.68 16 41 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.13 1.65 7.65 -2.91 -0.02 1.63 16 Total: -1.00 -79.96 386.95 4.85 -75.11 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.39 Total: 12.72 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.55 Total: 3.14 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -2.25 Total: -73.46 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: 0.12 Total: -63.68 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -79.96 4.85 -75.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.514 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds