Wall clock time and date at job start Tue Mar 31 2020 18:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21255 * 120.00303 * 2 1 4 4 C 1.47179 * 119.99794 * 179.97438 * 2 1 3 5 5 C 1.39893 * 120.13942 * 359.97438 * 4 2 1 6 6 C 1.37907 * 119.96827 * 180.02562 * 5 4 2 7 7 C 1.38305 * 120.25146 * 359.74084 * 6 5 4 8 8 C 1.38985 * 120.27622 * 0.51636 * 7 6 5 9 9 N 1.39963 * 119.98508 * 179.76116 * 8 7 6 10 10 C 1.34768 * 120.00342 * 214.82791 * 9 8 7 11 11 O 1.21290 * 119.99880 * 355.39552 * 10 9 8 12 12 C 1.50699 * 120.00318 * 175.39236 * 10 9 8 13 13 H 1.09000 * 109.47488 * 305.00133 * 12 10 9 14 14 C 1.53001 * 109.46938 * 65.00376 * 12 10 9 15 15 O 1.45197 * 109.47250 * 185.00138 * 12 10 9 16 16 C 1.34230 * 117.00154 * 150.00301 * 15 12 10 17 17 O 1.20824 * 120.00037 * 359.97438 * 16 15 12 18 18 C 1.50698 * 120.00193 * 179.97438 * 16 15 12 19 19 C 1.53004 * 109.47337 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47337 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99657 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99784 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00244 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99539 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47392 * 90.00544 * 24 22 20 26 26 H 1.48499 * 109.46926 * 210.00085 * 24 22 20 27 27 H 1.48496 * 109.47396 * 329.99970 * 24 22 20 28 28 C 1.38567 * 120.02958 * 359.48407 * 8 7 6 29 29 H 1.08992 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47146 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46765 * 59.99794 * 1 2 3 32 32 H 1.07995 * 120.01597 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.87631 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.85695 * 180.25758 * 7 6 5 35 35 H 0.97003 * 119.99779 * 34.82681 * 9 8 7 36 36 H 1.09003 * 109.46956 * 299.99551 * 14 12 10 37 37 H 1.09002 * 109.47319 * 180.02562 * 14 12 10 38 38 H 1.08995 * 109.47578 * 59.99915 * 14 12 10 39 39 H 1.08999 * 109.47219 * 300.00121 * 18 16 15 40 40 H 1.09004 * 109.46932 * 59.99931 * 18 16 15 41 41 H 1.08999 * 109.47188 * 300.00291 * 19 18 16 42 42 H 1.09003 * 109.47171 * 59.99378 * 19 18 16 43 43 H 0.97003 * 120.00070 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.12470 * 180.23145 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6801 0.0027 7 6 3.6224 -3.6821 -0.0027 8 6 4.3249 -2.4828 0.0016 9 7 5.7245 -2.4920 0.0011 10 6 6.4048 -1.5409 0.6710 11 8 5.8075 -0.6299 1.2043 12 6 7.9078 -1.6092 0.7576 13 1 8.2047 -2.5752 1.1661 14 6 8.5073 -1.4404 -0.6399 15 8 8.3915 -0.5484 1.6231 16 6 9.5244 -0.7855 2.3028 17 8 10.0929 -1.8444 2.1791 18 6 10.0874 0.2692 3.2202 19 6 11.3723 -0.2511 3.8677 20 6 11.9350 0.8033 4.7856 21 1 11.4267 1.7497 4.8965 22 6 13.0981 0.5593 5.4847 23 7 13.7168 -0.5933 5.3500 24 14 13.7950 1.8661 6.6230 25 1 13.2322 1.6871 7.9855 26 1 15.2735 1.7376 6.6776 27 1 13.4338 3.2124 6.1111 28 6 3.6402 -1.2781 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.4664 -2.4907 0.0017 33 1 1.7001 -4.6158 0.0031 34 1 4.1587 -4.6195 -0.0060 35 1 6.2048 -3.1830 -0.4814 36 1 8.1442 -2.2368 -1.2896 37 1 9.5944 -1.4902 -0.5775 38 1 8.2104 -0.4745 -1.0484 39 1 10.3078 1.1696 2.6468 40 1 9.3584 0.5022 3.9965 41 1 11.1515 -1.1513 4.4412 42 1 12.1014 -0.4846 3.0917 43 1 14.5353 -0.7648 5.8416 44 1 4.1845 -0.3453 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:49 Heat of formation + Delta-G solvation = -135.737075 kcal Electronic energy + Delta-G solvation = -27197.876197 eV Core-core repulsion = 23080.555190 eV Total energy + Delta-G solvation = -4117.321008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18850 -40.27029 -39.57511 -38.27240 -36.28705 -35.22505 -33.61527 -32.56362 -31.91653 -31.07597 -30.59936 -29.12289 -26.23578 -25.09570 -24.26333 -23.25550 -22.09900 -20.61267 -20.33378 -19.84999 -18.20402 -17.72607 -17.31759 -16.79150 -16.32975 -16.09865 -15.92426 -15.69667 -15.35270 -15.24738 -15.11453 -14.47474 -14.34773 -14.22901 -13.95889 -13.60364 -13.19422 -13.04220 -12.87607 -12.65146 -12.46626 -12.35264 -12.27145 -12.21479 -11.95023 -11.66128 -11.23093 -10.96153 -10.82615 -10.74339 -10.63596 -10.09634 -10.06527 -10.03511 -9.92473 -9.59049 -9.38007 -9.18865 -8.64211 -8.38209 -6.02264 -4.06879 0.24641 0.88805 1.96128 2.15688 2.31818 2.71544 3.19064 3.32353 3.38513 3.39175 3.42163 3.66474 4.19522 4.38251 4.44368 4.50668 4.57330 4.63389 4.72114 4.78228 4.91428 5.01456 5.01929 5.07255 5.18402 5.33399 5.40480 5.44765 5.52080 5.54063 5.81702 5.84266 5.86346 5.92998 6.00013 6.11320 6.19034 6.50194 6.54205 6.83747 6.89651 7.20774 7.65065 7.71045 7.71208 7.96689 8.17528 8.35761 8.99969 9.57279 11.08728 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.002002 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.421955 B =13984.577254 C =14818.654119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.392 3.608 3 O -0.449 6.449 4 C -0.155 4.155 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.137 3.863 9 N -0.673 5.673 10 C 0.517 3.483 11 O -0.488 6.488 12 C 0.069 3.931 13 H 0.113 0.887 14 C -0.165 4.165 15 O -0.336 6.336 16 C 0.459 3.541 17 O -0.504 6.504 18 C -0.102 4.102 19 C 0.034 3.966 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.065 4.065 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.798 -8.597 -16.632 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.269 3.731 3 O -0.324 6.324 4 C -0.156 4.156 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.134 4.134 8 C 0.043 3.957 9 N -0.321 5.321 10 C 0.304 3.696 11 O -0.359 6.359 12 C 0.010 3.990 13 H 0.131 0.869 14 C -0.223 4.223 15 O -0.253 6.253 16 C 0.303 3.697 17 O -0.390 6.390 18 C -0.140 4.140 19 C -0.003 4.003 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.085 4.085 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.497 -7.775 -16.197 32.013 hybrid contribution 0.715 -0.118 0.393 0.824 sum -25.781 -7.894 -15.804 31.253 Atomic orbital electron populations 1.22234 0.93585 1.04788 1.05088 1.22510 0.91682 0.87588 0.71327 1.90592 1.72007 1.34240 1.35563 1.20463 0.93910 0.95140 1.06102 1.21497 1.00241 0.91379 0.97949 1.20926 0.93327 0.98363 1.00558 1.21194 0.94788 0.96659 1.00785 1.17644 0.82538 0.93878 1.01595 1.43390 1.04444 1.31633 1.52659 1.20571 0.89481 0.81749 0.77838 1.90785 1.69653 1.32131 1.43348 1.22221 0.89678 0.94197 0.92912 0.86940 1.22169 1.03277 1.03597 0.93253 1.86754 1.41764 1.42349 1.54457 1.24995 0.77051 0.89588 0.78054 1.90622 1.58732 1.26951 1.62723 1.21817 1.00867 0.95312 0.95996 1.19031 0.88820 0.96850 0.95630 1.21157 1.08698 1.01077 1.25705 0.92229 1.25018 0.96809 0.95595 0.96921 1.69990 1.18206 1.22695 1.41956 0.86527 0.78120 0.81900 0.81057 1.20590 1.21195 1.19754 1.21644 0.93256 0.98734 0.94840 0.89758 0.88651 0.88718 0.84654 0.84794 0.84964 0.74932 0.90549 0.89890 0.90708 0.88659 0.88662 0.95579 0.95525 0.92855 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 10.19 36.01 0.37 -0.68 16 2 C 0.39 3.90 7.23 -30.68 -0.22 3.68 16 3 O -0.45 -6.47 17.09 5.58 0.10 -6.37 16 4 C -0.15 -1.49 5.87 -105.09 -0.62 -2.11 16 5 C -0.09 -0.58 9.45 -39.08 -0.37 -0.95 16 6 C -0.11 -0.65 10.02 -39.68 -0.40 -1.04 16 7 C -0.11 -0.78 9.96 -39.28 -0.39 -1.17 16 8 C 0.14 1.34 6.29 -83.75 -0.53 0.81 16 9 N -0.67 -6.13 5.30 -9.90 -0.05 -6.18 16 10 C 0.52 6.78 7.02 -10.99 -0.08 6.70 16 11 O -0.49 -8.46 13.94 -14.06 -0.20 -8.65 16 12 C 0.07 0.92 2.98 -27.88 -0.08 0.83 16 13 H 0.11 1.43 7.16 -51.93 -0.37 1.06 16 14 C -0.17 -1.69 9.49 37.16 0.35 -1.34 16 15 O -0.34 -5.87 9.42 -45.89 -0.43 -6.31 16 16 C 0.46 9.07 7.93 36.00 0.29 9.35 16 17 O -0.50 -10.94 15.20 -18.75 -0.28 -11.23 16 18 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 19 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 20 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 24 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.06 -0.77 8.24 -38.90 -0.32 -1.09 16 29 H 0.08 0.22 5.60 -51.93 -0.29 -0.07 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 0.43 5.92 -52.49 -0.31 0.12 16 33 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.41 2.20 8.45 -40.82 -0.34 1.85 16 36 H 0.08 0.50 7.78 -51.93 -0.40 0.09 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.15 2.27 5.81 -52.49 -0.30 1.97 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -37.74 382.28 -7.87 -45.61 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.79 Total: -0.85 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.69 Total: -2.13 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.68 Total: -32.45 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.82 Total: -32.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.74 -7.87 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.125 kcal (2) G-P(sol) polarization free energy of solvation -37.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds