Wall clock time and date at job start Tue Mar 31 2020 18:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21255 * 120.00303 * 2 1 4 4 C 1.47179 * 119.99794 * 179.97438 * 2 1 3 5 5 C 1.39893 * 120.13942 * 359.97438 * 4 2 1 6 6 C 1.37907 * 119.96827 * 180.02562 * 5 4 2 7 7 C 1.38305 * 120.25146 * 359.74084 * 6 5 4 8 8 C 1.38985 * 120.27622 * 0.51636 * 7 6 5 9 9 N 1.39963 * 119.98508 * 179.76116 * 8 7 6 10 10 C 1.34768 * 120.00342 * 214.82791 * 9 8 7 11 11 O 1.21290 * 119.99880 * 355.39552 * 10 9 8 12 12 C 1.50699 * 120.00318 * 175.39236 * 10 9 8 13 13 H 1.09000 * 109.47488 * 305.00133 * 12 10 9 14 14 C 1.53001 * 109.46938 * 65.00376 * 12 10 9 15 15 O 1.45197 * 109.47250 * 185.00138 * 12 10 9 16 16 C 1.34230 * 117.00154 * 150.00301 * 15 12 10 17 17 O 1.20824 * 120.00037 * 359.97438 * 16 15 12 18 18 C 1.50698 * 120.00193 * 179.97438 * 16 15 12 19 19 C 1.53004 * 109.47337 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47337 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99657 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99784 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00244 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99539 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47392 * 90.00544 * 24 22 20 26 26 H 1.48499 * 109.46926 * 210.00085 * 24 22 20 27 27 H 1.48496 * 109.47396 * 329.99970 * 24 22 20 28 28 C 1.38567 * 120.02958 * 359.48407 * 8 7 6 29 29 H 1.08992 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47146 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46765 * 59.99794 * 1 2 3 32 32 H 1.07995 * 120.01597 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.87631 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.85695 * 180.25758 * 7 6 5 35 35 H 0.97003 * 119.99779 * 34.82681 * 9 8 7 36 36 H 1.09003 * 109.46956 * 299.99551 * 14 12 10 37 37 H 1.09002 * 109.47319 * 180.02562 * 14 12 10 38 38 H 1.08995 * 109.47578 * 59.99915 * 14 12 10 39 39 H 1.08999 * 109.47219 * 300.00121 * 18 16 15 40 40 H 1.09004 * 109.46932 * 59.99931 * 18 16 15 41 41 H 1.08999 * 109.47188 * 300.00291 * 19 18 16 42 42 H 1.09003 * 109.47171 * 59.99378 * 19 18 16 43 43 H 0.97003 * 120.00070 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.12470 * 180.23145 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6801 0.0027 7 6 3.6224 -3.6821 -0.0027 8 6 4.3249 -2.4828 0.0016 9 7 5.7245 -2.4920 0.0011 10 6 6.4048 -1.5409 0.6710 11 8 5.8075 -0.6299 1.2043 12 6 7.9078 -1.6092 0.7576 13 1 8.2047 -2.5752 1.1661 14 6 8.5073 -1.4404 -0.6399 15 8 8.3915 -0.5484 1.6231 16 6 9.5244 -0.7855 2.3028 17 8 10.0929 -1.8444 2.1791 18 6 10.0874 0.2692 3.2202 19 6 11.3723 -0.2511 3.8677 20 6 11.9350 0.8033 4.7856 21 1 11.4267 1.7497 4.8965 22 6 13.0981 0.5593 5.4847 23 7 13.7168 -0.5933 5.3500 24 14 13.7950 1.8661 6.6230 25 1 13.2322 1.6871 7.9855 26 1 15.2735 1.7376 6.6776 27 1 13.4338 3.2124 6.1111 28 6 3.6402 -1.2781 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.4664 -2.4907 0.0017 33 1 1.7001 -4.6158 0.0031 34 1 4.1587 -4.6195 -0.0060 35 1 6.2048 -3.1830 -0.4814 36 1 8.1442 -2.2368 -1.2896 37 1 9.5944 -1.4902 -0.5775 38 1 8.2104 -0.4745 -1.0484 39 1 10.3078 1.1696 2.6468 40 1 9.3584 0.5022 3.9965 41 1 11.1515 -1.1513 4.4412 42 1 12.1014 -0.4846 3.0917 43 1 14.5353 -0.7648 5.8416 44 1 4.1845 -0.3453 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:48 Heat of formation + Delta-G solvation = -160.362788 kcal Electronic energy + Delta-G solvation = -27198.944049 eV Core-core repulsion = 23080.555190 eV Total energy + Delta-G solvation = -4118.388859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21475 -41.45298 -40.57367 -39.10948 -37.73997 -36.12332 -35.68286 -33.69648 -32.98204 -32.52861 -31.29191 -29.73504 -28.14884 -26.18192 -24.90778 -24.53372 -23.43463 -21.73704 -21.36767 -21.04878 -19.28758 -19.07864 -18.31529 -18.21688 -17.59564 -17.37278 -16.86378 -16.75167 -16.50169 -16.28337 -16.10499 -16.04905 -15.40026 -15.19856 -14.92019 -14.57440 -14.47712 -14.29763 -14.00720 -13.74464 -13.50926 -13.32864 -13.28232 -13.05347 -12.90312 -12.84494 -12.74272 -12.53777 -12.41781 -12.08954 -12.00263 -11.79107 -11.63890 -11.53270 -11.31912 -10.96882 -10.82310 -10.59307 -10.02346 -9.34237 -8.22073 -6.35423 -0.40442 0.20774 1.02472 1.16699 1.17986 1.42263 1.44025 1.46328 1.55429 2.05851 2.41923 2.76996 3.01601 3.11572 3.29756 3.61674 3.74621 3.82615 3.86939 4.01260 4.05002 4.19090 4.34516 4.38445 4.39069 4.41452 4.52650 4.54632 4.63859 4.64348 4.84334 4.91462 4.97729 5.06554 5.18672 5.21275 5.27607 5.32748 5.40500 5.44079 5.52373 5.77997 5.88373 6.10538 6.12904 6.51428 6.66559 6.81537 6.83566 7.34407 8.90349 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.002002 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.421955 B =13984.577254 C =14818.654119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.386 3.614 3 O -0.513 6.513 4 C -0.179 4.179 5 C -0.073 4.073 6 C -0.106 4.106 7 C -0.101 4.101 8 C 0.112 3.888 9 N -0.651 5.651 10 C 0.519 3.481 11 O -0.540 6.540 12 C 0.062 3.938 13 H 0.121 0.879 14 C -0.160 4.160 15 O -0.344 6.344 16 C 0.470 3.530 17 O -0.529 6.529 18 C -0.097 4.097 19 C 0.042 3.958 20 C -0.547 4.547 21 H 0.073 0.927 22 C -0.002 4.002 23 N -0.932 5.932 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.099 4.099 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.165 0.835 35 H 0.433 0.567 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.109 0.891 41 H -0.007 1.007 42 H -0.004 1.004 43 H 0.265 0.735 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.465 -10.340 -17.281 35.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.268 3.732 3 O -0.393 6.393 4 C -0.181 4.181 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.121 4.121 8 C 0.018 3.982 9 N -0.300 5.300 10 C 0.306 3.694 11 O -0.415 6.415 12 C 0.004 3.996 13 H 0.139 0.861 14 C -0.217 4.217 15 O -0.260 6.260 16 C 0.315 3.685 17 O -0.418 6.418 18 C -0.134 4.134 19 C 0.005 3.995 20 C -0.585 4.585 21 H 0.091 0.909 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.797 3.203 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.119 4.119 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.193 0.807 33 H 0.195 0.805 34 H 0.182 0.818 35 H 0.274 0.726 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.073 0.927 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.210 -9.568 -16.895 35.074 hybrid contribution 1.400 0.277 0.500 1.512 sum -27.809 -9.291 -16.395 33.593 Atomic orbital electron populations 1.22280 0.89466 1.07287 1.05789 1.23398 0.93986 0.86906 0.68940 1.90568 1.73608 1.36203 1.38892 1.20661 0.93215 0.96636 1.07590 1.21956 1.02152 0.89988 0.95041 1.21496 0.92913 0.99730 0.98301 1.21612 0.95653 0.96361 0.98446 1.17850 0.82402 0.94421 1.03478 1.43117 1.04645 1.30755 1.51453 1.20543 0.89252 0.81838 0.77737 1.90784 1.70427 1.34357 1.45976 1.22644 0.90094 0.93168 0.93741 0.86106 1.22205 1.02425 1.05188 0.91916 1.86681 1.40472 1.44067 1.54806 1.24510 0.77436 0.88680 0.77888 1.90606 1.59711 1.27795 1.63699 1.21556 0.98827 0.96131 0.96901 1.18787 0.90680 0.95566 0.94511 1.21622 1.09108 1.01844 1.25895 0.90861 1.26058 0.97256 0.97979 0.98706 1.70140 1.18807 1.25025 1.43236 0.85325 0.77181 0.79120 0.78668 1.19759 1.20841 1.18294 1.21486 0.94693 0.98011 0.97729 0.86327 0.88103 0.87577 0.80687 0.80549 0.81787 0.72636 0.86190 0.90960 0.91047 0.86705 0.87285 0.98887 0.98522 0.92653 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 10.19 71.24 0.73 -0.90 16 2 C 0.39 7.96 7.23 28.04 0.20 8.16 16 3 O -0.51 -16.37 17.09 -2.95 -0.05 -16.43 16 4 C -0.18 -3.42 5.87 -20.17 -0.12 -3.54 16 5 C -0.07 -0.66 9.45 22.59 0.21 -0.44 16 6 C -0.11 -0.70 10.02 22.21 0.22 -0.48 16 7 C -0.10 -1.03 9.96 22.46 0.22 -0.80 16 8 C 0.11 2.11 6.29 38.10 0.24 2.35 16 9 N -0.65 -11.50 5.30 -303.63 -1.61 -13.11 16 10 C 0.52 14.10 7.02 87.66 0.62 14.72 16 11 O -0.54 -20.20 13.94 15.69 0.22 -19.98 16 12 C 0.06 1.66 2.98 29.85 0.09 1.75 16 13 H 0.12 3.06 7.16 -2.39 -0.02 3.04 16 14 C -0.16 -3.20 9.49 71.98 0.68 -2.51 16 15 O -0.34 -12.39 9.42 -45.07 -0.42 -12.81 16 16 C 0.47 19.12 7.93 71.24 0.56 19.69 16 17 O -0.53 -23.78 15.20 21.97 0.33 -23.45 16 18 C -0.10 -4.14 5.75 29.85 0.17 -3.97 16 19 C 0.04 2.30 4.26 29.85 0.13 2.42 16 20 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 21 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 23 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 24 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 28 C -0.10 -2.50 8.24 22.71 0.19 -2.32 16 29 H 0.12 0.11 5.60 -2.39 -0.01 0.10 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.18 0.09 5.92 -2.91 -0.02 0.08 16 33 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 35 H 0.43 3.75 8.45 -92.71 -0.78 2.96 16 36 H 0.12 1.30 7.78 -2.39 -0.02 1.28 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 4.44 8.14 -2.39 -0.02 4.42 16 40 H 0.11 4.35 8.14 -2.38 -0.02 4.34 16 41 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 42 H 0.00 -0.22 8.10 -2.39 -0.02 -0.24 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.11 3.66 5.81 -2.91 -0.02 3.65 16 Total: -1.00 -90.61 382.28 5.88 -84.73 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.26 Total: 8.75 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.84 Total: 3.47 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.32 Total: -70.83 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: 0.08 Total: -72.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -90.61 5.88 -84.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.632 kcal (2) G-P(sol) polarization free energy of solvation -90.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds