Wall clock time and date at job start Tue Mar 31 2020 18:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21257 * 120.00039 * 2 1 4 4 C 1.47182 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.39895 * 120.13500 * 359.97438 * 4 2 1 6 6 C 1.37901 * 119.96430 * 180.02562 * 5 4 2 7 7 C 1.38296 * 120.25331 * 359.74543 * 6 5 4 8 8 C 1.38993 * 120.27754 * 0.50941 * 7 6 5 9 9 N 1.39964 * 119.98257 * 179.76491 * 8 7 6 10 10 C 1.34777 * 119.99540 * 214.81662 * 9 8 7 11 11 O 1.21285 * 120.00376 * 355.66129 * 10 9 8 12 12 C 1.50706 * 119.99776 * 175.66022 * 10 9 8 13 13 H 1.08995 * 109.47198 * 55.00115 * 12 10 9 14 14 C 1.53002 * 109.46815 * 295.00177 * 12 10 9 15 15 O 1.45199 * 109.46922 * 175.00434 * 12 10 9 16 16 C 1.34234 * 116.99556 * 209.99803 * 15 12 10 17 17 O 1.20825 * 119.99869 * 359.97438 * 16 15 12 18 18 C 1.50703 * 119.99870 * 179.97438 * 16 15 12 19 19 C 1.53000 * 109.47069 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46858 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00372 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99705 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47283 * 89.99728 * 24 22 20 26 26 H 1.48499 * 109.46755 * 209.99816 * 24 22 20 27 27 H 1.48496 * 109.47314 * 329.99255 * 24 22 20 28 28 C 1.38559 * 120.02802 * 359.49115 * 8 7 6 29 29 H 1.09005 * 109.47167 * 270.00628 * 1 2 3 30 30 H 1.09005 * 109.47018 * 30.00016 * 1 2 3 31 31 H 1.08996 * 109.47082 * 150.00063 * 1 2 3 32 32 H 1.07999 * 120.01697 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.87698 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.86573 * 180.25943 * 7 6 5 35 35 H 0.97002 * 120.00121 * 35.10269 * 9 8 7 36 36 H 1.09009 * 109.47170 * 299.99878 * 14 12 10 37 37 H 1.08998 * 109.47357 * 59.99762 * 14 12 10 38 38 H 1.08998 * 109.47111 * 180.02562 * 14 12 10 39 39 H 1.09000 * 109.46935 * 300.00333 * 18 16 15 40 40 H 1.09007 * 109.46921 * 59.99844 * 18 16 15 41 41 H 1.08997 * 109.47379 * 300.00479 * 19 18 16 42 42 H 1.09009 * 109.46649 * 60.00112 * 19 18 16 43 43 H 0.96994 * 120.00114 * 179.97438 * 23 22 20 44 44 H 1.08006 * 120.12773 * 180.22922 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5464 -2.4878 0.0017 6 6 2.2395 -3.6800 0.0027 7 6 3.6224 -3.6819 -0.0026 8 6 4.3249 -2.4826 0.0016 9 7 5.7245 -2.4918 0.0012 10 6 6.4048 -1.5404 0.6710 11 8 5.8071 -0.6320 1.2081 12 6 7.9083 -1.6054 0.7525 13 1 8.3246 -1.6608 -0.2533 14 6 8.3228 -2.8467 1.5452 15 8 8.4087 -0.4163 1.4187 16 6 9.6291 0.0139 1.0620 17 8 10.2586 -0.5836 0.2214 18 6 10.2143 1.2423 1.7101 19 6 11.6036 1.5126 1.1292 20 6 12.1884 2.7413 1.7769 21 1 11.6257 3.2756 2.5280 22 6 13.4420 3.1833 1.4104 23 7 14.1276 2.5324 0.4961 24 14 14.1672 4.7058 2.2138 25 1 14.9324 4.3105 3.4235 26 1 15.0740 5.3869 1.2551 27 1 13.0718 5.6306 2.6011 28 6 3.6403 -1.2780 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4664 -2.4907 0.0025 33 1 1.7003 -4.6157 0.0031 34 1 4.1589 -4.6193 -0.0060 35 1 6.2049 -3.1805 -0.4845 36 1 7.9064 -2.7913 2.5511 37 1 7.9471 -3.7394 1.0452 38 1 9.4101 -2.8935 1.6046 39 1 9.5668 2.0978 1.5180 40 1 10.2952 1.0822 2.7853 41 1 12.2508 0.6570 1.3217 42 1 11.5230 1.6726 0.0539 43 1 15.0093 2.8435 0.2381 44 1 4.1845 -0.3451 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:53 Heat of formation + Delta-G solvation = -137.381336 kcal Electronic energy + Delta-G solvation = -27217.131224 eV Core-core repulsion = 23099.738916 eV Total energy + Delta-G solvation = -4117.392308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18371 -40.26234 -39.56561 -38.26934 -36.28343 -35.21800 -33.60944 -32.54409 -31.91771 -31.07028 -30.57096 -29.14719 -26.23045 -25.09391 -24.26225 -23.23412 -22.07619 -20.64973 -20.33964 -19.84856 -18.17118 -17.71153 -17.29739 -16.73545 -16.27667 -16.16668 -15.85404 -15.70566 -15.49340 -15.27050 -15.01188 -14.46969 -14.35927 -14.11595 -14.00323 -13.62558 -13.20377 -13.03039 -12.81891 -12.63473 -12.48237 -12.34797 -12.32816 -12.21004 -11.95188 -11.69004 -11.22661 -10.95846 -10.85461 -10.70097 -10.62932 -10.09125 -10.05974 -10.03093 -9.92823 -9.58476 -9.38116 -9.18317 -8.64513 -8.37633 -6.01690 -4.06277 0.25072 0.88878 1.96362 2.17644 2.30357 2.72112 3.19579 3.32690 3.38859 3.39057 3.42802 3.67617 4.20573 4.39149 4.44890 4.52331 4.60973 4.63607 4.72270 4.77487 4.88284 5.00464 5.03083 5.08693 5.15949 5.33949 5.40497 5.44707 5.53786 5.54380 5.81136 5.83692 5.86302 5.93235 6.00844 6.11761 6.19602 6.50350 6.54418 6.84180 6.89842 7.22284 7.65634 7.71313 7.71737 7.97285 8.17970 8.36295 9.00571 9.57831 11.09324 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002064 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.037461 B =13561.451356 C =14829.551064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.390 3.610 3 O -0.447 6.447 4 C -0.154 4.154 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.114 4.114 8 C 0.138 3.862 9 N -0.673 5.673 10 C 0.517 3.483 11 O -0.488 6.488 12 C 0.069 3.931 13 H 0.113 0.887 14 C -0.164 4.164 15 O -0.336 6.336 16 C 0.459 3.541 17 O -0.504 6.504 18 C -0.102 4.102 19 C 0.034 3.966 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.065 4.065 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.043 -17.986 -2.013 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.267 3.733 3 O -0.322 6.322 4 C -0.155 4.155 5 C -0.110 4.110 6 C -0.132 4.132 7 C -0.134 4.134 8 C 0.044 3.956 9 N -0.321 5.321 10 C 0.304 3.696 11 O -0.359 6.359 12 C 0.010 3.990 13 H 0.130 0.870 14 C -0.221 4.221 15 O -0.253 6.253 16 C 0.303 3.697 17 O -0.390 6.390 18 C -0.140 4.140 19 C -0.003 4.003 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.714 -16.925 -1.946 32.532 hybrid contribution 0.754 0.111 0.029 0.763 sum -26.960 -16.814 -1.917 31.832 Atomic orbital electron populations 1.22229 0.93530 1.04926 1.04858 1.22526 0.91700 0.87590 0.71470 1.90604 1.72050 1.34199 1.35298 1.20464 0.93891 0.95142 1.06046 1.21454 1.00229 0.91355 0.97957 1.20913 0.93333 0.98340 1.00642 1.21172 0.94758 0.96589 1.00930 1.17637 0.82538 0.93858 1.01579 1.43391 1.04447 1.31839 1.52448 1.20573 0.89535 0.81646 0.77896 1.90784 1.69635 1.32173 1.43335 1.22216 0.89902 0.86667 1.00253 0.86983 1.22150 1.04130 0.94655 1.01182 1.86756 1.35171 1.41653 1.61759 1.25000 0.77907 0.86319 0.80468 1.90623 1.59964 1.56874 1.31547 1.21819 1.00585 0.90342 1.01242 1.19031 0.87141 0.97283 0.96879 1.21157 1.01650 1.10998 1.22822 0.92230 1.25022 0.97038 0.97207 0.95080 1.69988 1.12461 1.39753 1.30646 0.86527 0.79081 0.82923 0.79080 1.20597 1.21191 1.19748 1.21660 0.93296 0.98796 0.94760 0.88375 0.89306 0.89502 0.84773 0.84832 0.85010 0.74914 0.90808 0.90520 0.89947 0.88629 0.88688 0.95543 0.95557 0.92854 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 9.75 36.01 0.35 -0.71 16 2 C 0.39 3.97 7.23 -30.68 -0.22 3.75 16 3 O -0.45 -6.63 17.09 5.58 0.10 -6.53 16 4 C -0.15 -1.50 5.87 -105.09 -0.62 -2.11 16 5 C -0.09 -0.57 9.36 -39.08 -0.37 -0.93 16 6 C -0.11 -0.62 10.02 -39.68 -0.40 -1.02 16 7 C -0.11 -0.74 9.96 -39.28 -0.39 -1.13 16 8 C 0.14 1.33 6.29 -83.75 -0.53 0.81 16 9 N -0.67 -6.11 5.30 -9.90 -0.05 -6.17 16 10 C 0.52 6.77 7.02 -10.98 -0.08 6.69 16 11 O -0.49 -8.45 13.95 -14.05 -0.20 -8.65 16 12 C 0.07 0.91 2.98 -27.88 -0.08 0.83 16 13 H 0.11 1.42 7.16 -51.93 -0.37 1.05 16 14 C -0.16 -1.66 9.50 37.16 0.35 -1.31 16 15 O -0.34 -5.88 9.42 -45.90 -0.43 -6.31 16 16 C 0.46 9.09 7.93 36.01 0.29 9.38 16 17 O -0.50 -10.97 15.20 -18.75 -0.28 -11.25 16 18 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 19 C 0.03 0.89 4.26 -27.89 -0.12 0.78 16 20 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 24 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.06 -0.79 8.24 -38.90 -0.32 -1.11 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.24 6.47 -51.93 -0.34 -0.10 16 32 H 0.13 0.41 6.35 -52.49 -0.33 0.08 16 33 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.41 2.21 8.77 -40.82 -0.36 1.85 16 36 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.03 0.75 8.10 -51.92 -0.42 0.33 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.15 2.35 5.82 -52.48 -0.31 2.04 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -37.89 383.69 -7.96 -45.85 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.89 Total: -1.02 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.70 Total: -2.04 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.68 Total: -32.50 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.82 Total: -32.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.89 -7.96 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.530 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds