Wall clock time and date at job start Tue Mar 31 2020 18:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21257 * 120.00039 * 2 1 4 4 C 1.47182 * 120.00220 * 179.97438 * 2 1 3 5 5 C 1.39895 * 120.13500 * 359.97438 * 4 2 1 6 6 C 1.37901 * 119.96430 * 180.02562 * 5 4 2 7 7 C 1.38296 * 120.25331 * 359.74543 * 6 5 4 8 8 C 1.38993 * 120.27754 * 0.50941 * 7 6 5 9 9 N 1.39964 * 119.98257 * 179.76491 * 8 7 6 10 10 C 1.34777 * 119.99540 * 214.81662 * 9 8 7 11 11 O 1.21285 * 120.00376 * 355.66129 * 10 9 8 12 12 C 1.50706 * 119.99776 * 175.66022 * 10 9 8 13 13 H 1.08995 * 109.47198 * 55.00115 * 12 10 9 14 14 C 1.53002 * 109.46815 * 295.00177 * 12 10 9 15 15 O 1.45199 * 109.46922 * 175.00434 * 12 10 9 16 16 C 1.34234 * 116.99556 * 209.99803 * 15 12 10 17 17 O 1.20825 * 119.99869 * 359.97438 * 16 15 12 18 18 C 1.50703 * 119.99870 * 179.97438 * 16 15 12 19 19 C 1.53000 * 109.47069 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46858 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00372 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99705 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47283 * 89.99728 * 24 22 20 26 26 H 1.48499 * 109.46755 * 209.99816 * 24 22 20 27 27 H 1.48496 * 109.47314 * 329.99255 * 24 22 20 28 28 C 1.38559 * 120.02802 * 359.49115 * 8 7 6 29 29 H 1.09005 * 109.47167 * 270.00628 * 1 2 3 30 30 H 1.09005 * 109.47018 * 30.00016 * 1 2 3 31 31 H 1.08996 * 109.47082 * 150.00063 * 1 2 3 32 32 H 1.07999 * 120.01697 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.87698 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.86573 * 180.25943 * 7 6 5 35 35 H 0.97002 * 120.00121 * 35.10269 * 9 8 7 36 36 H 1.09009 * 109.47170 * 299.99878 * 14 12 10 37 37 H 1.08998 * 109.47357 * 59.99762 * 14 12 10 38 38 H 1.08998 * 109.47111 * 180.02562 * 14 12 10 39 39 H 1.09000 * 109.46935 * 300.00333 * 18 16 15 40 40 H 1.09007 * 109.46921 * 59.99844 * 18 16 15 41 41 H 1.08997 * 109.47379 * 300.00479 * 19 18 16 42 42 H 1.09009 * 109.46649 * 60.00112 * 19 18 16 43 43 H 0.96994 * 120.00114 * 179.97438 * 23 22 20 44 44 H 1.08006 * 120.12773 * 180.22922 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5464 -2.4878 0.0017 6 6 2.2395 -3.6800 0.0027 7 6 3.6224 -3.6819 -0.0026 8 6 4.3249 -2.4826 0.0016 9 7 5.7245 -2.4918 0.0012 10 6 6.4048 -1.5404 0.6710 11 8 5.8071 -0.6320 1.2081 12 6 7.9083 -1.6054 0.7525 13 1 8.3246 -1.6608 -0.2533 14 6 8.3228 -2.8467 1.5452 15 8 8.4087 -0.4163 1.4187 16 6 9.6291 0.0139 1.0620 17 8 10.2586 -0.5836 0.2214 18 6 10.2143 1.2423 1.7101 19 6 11.6036 1.5126 1.1292 20 6 12.1884 2.7413 1.7769 21 1 11.6257 3.2756 2.5280 22 6 13.4420 3.1833 1.4104 23 7 14.1276 2.5324 0.4961 24 14 14.1672 4.7058 2.2138 25 1 14.9324 4.3105 3.4235 26 1 15.0740 5.3869 1.2551 27 1 13.0718 5.6306 2.6011 28 6 3.6403 -1.2780 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4664 -2.4907 0.0025 33 1 1.7003 -4.6157 0.0031 34 1 4.1589 -4.6193 -0.0060 35 1 6.2049 -3.1805 -0.4845 36 1 7.9064 -2.7913 2.5511 37 1 7.9471 -3.7394 1.0452 38 1 9.4101 -2.8935 1.6046 39 1 9.5668 2.0978 1.5180 40 1 10.2952 1.0822 2.7853 41 1 12.2508 0.6570 1.3217 42 1 11.5230 1.6726 0.0539 43 1 15.0093 2.8435 0.2381 44 1 4.1845 -0.3451 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:52 Heat of formation + Delta-G solvation = -162.398467 kcal Electronic energy + Delta-G solvation = -27218.216048 eV Core-core repulsion = 23099.738916 eV Total energy + Delta-G solvation = -4118.477133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21132 -41.45129 -40.57307 -39.10918 -37.74224 -36.11351 -35.68851 -33.68640 -32.97402 -32.53024 -31.26210 -29.75582 -28.15279 -26.17137 -24.89973 -24.53508 -23.39911 -21.73889 -21.41656 -21.04969 -19.28771 -19.05291 -18.30320 -18.21501 -17.48950 -17.40204 -16.89226 -16.73923 -16.50678 -16.27947 -16.18311 -16.05565 -15.35027 -15.17280 -14.85651 -14.65759 -14.45359 -14.30027 -14.03669 -13.70775 -13.48645 -13.29474 -13.25502 -13.06070 -12.88350 -12.83321 -12.78796 -12.54593 -12.49384 -12.08430 -12.00685 -11.79626 -11.62512 -11.54167 -11.32596 -10.96607 -10.83474 -10.59710 -10.01653 -9.33766 -8.22549 -6.35974 -0.39563 0.21144 1.04423 1.14657 1.18817 1.41716 1.43709 1.46160 1.55109 2.06191 2.41531 2.77492 3.02367 3.11035 3.30291 3.62727 3.74118 3.82670 3.87698 4.02121 4.08831 4.23363 4.34512 4.37107 4.37790 4.43509 4.54111 4.57022 4.60844 4.66621 4.84016 4.89830 4.99442 5.08573 5.19039 5.21317 5.27621 5.33943 5.41141 5.43422 5.51608 5.77409 5.89443 6.10131 6.13017 6.51725 6.66032 6.81136 6.83943 7.33848 8.89936 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002064 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.037461 B =13561.451356 C =14829.551064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.384 3.616 3 O -0.515 6.515 4 C -0.180 4.180 5 C -0.071 4.071 6 C -0.106 4.106 7 C -0.097 4.097 8 C 0.112 3.888 9 N -0.651 5.651 10 C 0.519 3.481 11 O -0.541 6.541 12 C 0.060 3.940 13 H 0.117 0.883 14 C -0.157 4.157 15 O -0.344 6.344 16 C 0.470 3.530 17 O -0.530 6.530 18 C -0.097 4.097 19 C 0.042 3.958 20 C -0.547 4.547 21 H 0.073 0.927 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.974 3.026 25 H -0.269 1.269 26 H -0.284 1.284 27 H -0.260 1.260 28 C -0.103 4.103 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.433 0.567 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.117 0.883 41 H -0.003 1.003 42 H -0.009 1.009 43 H 0.265 0.735 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.875 -20.859 -1.284 37.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.266 3.734 3 O -0.395 6.395 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.117 4.117 8 C 0.019 3.981 9 N -0.300 5.300 10 C 0.306 3.694 11 O -0.416 6.416 12 C 0.002 3.998 13 H 0.135 0.865 14 C -0.214 4.214 15 O -0.260 6.260 16 C 0.314 3.686 17 O -0.419 6.419 18 C -0.134 4.134 19 C 0.004 3.996 20 C -0.585 4.585 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.797 3.203 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.184 1.184 28 C -0.123 4.123 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.193 0.807 33 H 0.196 0.804 34 H 0.186 0.814 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.074 0.926 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -30.596 -19.872 -1.232 36.504 hybrid contribution 1.482 0.830 -0.260 1.718 sum -29.114 -19.042 -1.492 34.821 Atomic orbital electron populations 1.22275 0.89309 1.06629 1.06421 1.23463 0.94082 0.86941 0.68951 1.90579 1.73723 1.36307 1.38876 1.20642 0.93110 0.96645 1.07707 1.21926 1.02180 0.89911 0.94955 1.21511 0.92953 0.99689 0.98230 1.21616 0.95577 0.96273 0.98225 1.17848 0.82364 0.94392 1.03487 1.43118 1.04676 1.30979 1.51192 1.20546 0.89302 0.81746 0.77810 1.90784 1.70432 1.34370 1.46005 1.22661 0.90136 0.86175 1.00814 0.86503 1.22184 1.03408 0.94555 1.01243 1.86679 1.33678 1.43675 1.61984 1.24519 0.78448 0.85797 0.79792 1.90606 1.60924 1.57678 1.32658 1.21556 0.97879 0.91783 1.02183 1.18787 0.89839 0.95930 0.94997 1.21622 1.02188 1.11559 1.23098 0.90840 1.26071 0.97586 1.00802 0.95580 1.70140 1.12997 1.41811 1.32292 0.85318 0.78355 0.78494 0.78085 1.19477 1.20932 1.18430 1.21484 0.94820 0.98021 0.97991 0.86516 0.89510 0.85878 0.80716 0.80383 0.81406 0.72627 0.90798 0.86025 0.91146 0.87432 0.86531 0.98453 0.99026 0.92648 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 9.75 71.24 0.69 -0.98 16 2 C 0.38 8.19 7.23 28.04 0.20 8.40 16 3 O -0.52 -17.17 17.09 -2.96 -0.05 -17.22 16 4 C -0.18 -3.48 5.87 -20.17 -0.12 -3.59 16 5 C -0.07 -0.61 9.36 22.59 0.21 -0.40 16 6 C -0.11 -0.60 10.02 22.20 0.22 -0.37 16 7 C -0.10 -0.88 9.96 22.46 0.22 -0.66 16 8 C 0.11 2.10 6.29 38.10 0.24 2.33 16 9 N -0.65 -11.47 5.30 -303.61 -1.61 -13.08 16 10 C 0.52 14.14 7.02 87.66 0.62 14.76 16 11 O -0.54 -20.34 13.95 15.70 0.22 -20.12 16 12 C 0.06 1.63 2.98 29.85 0.09 1.72 16 13 H 0.12 3.04 7.16 -2.39 -0.02 3.02 16 14 C -0.16 -3.00 9.50 71.98 0.68 -2.32 16 15 O -0.34 -12.46 9.42 -45.11 -0.42 -12.89 16 16 C 0.47 19.32 7.93 71.24 0.56 19.88 16 17 O -0.53 -24.11 15.20 21.97 0.33 -23.77 16 18 C -0.10 -4.18 5.75 29.85 0.17 -4.00 16 19 C 0.04 2.31 4.26 29.85 0.13 2.44 16 20 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 21 H 0.07 3.93 7.74 -2.91 -0.02 3.90 16 22 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 23 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 24 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 C -0.10 -2.67 8.24 22.71 0.19 -2.49 16 29 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.12 0.15 6.47 -2.39 -0.02 0.13 16 32 H 0.18 0.01 6.35 -2.91 -0.02 0.00 16 33 H 0.18 -0.43 8.06 -2.91 -0.02 -0.46 16 34 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 35 H 0.43 3.76 8.77 -92.71 -0.81 2.95 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.12 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 40 H 0.12 4.51 8.14 -2.38 -0.02 4.49 16 41 H 0.00 -0.18 8.10 -2.39 -0.02 -0.20 16 42 H -0.01 -0.53 8.10 -2.38 -0.02 -0.55 16 43 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.10 3.65 5.82 -2.91 -0.02 3.63 16 Total: -1.00 -92.46 383.69 5.82 -86.65 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.23 Total: 7.88 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.81 Total: 3.83 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.32 Total: -71.18 kcal Atomic # 8 Polarization: -74.08 SS G_CDS: 0.08 Total: -74.00 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -92.46 5.82 -86.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.753 kcal (2) G-P(sol) polarization free energy of solvation -92.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds