Wall clock time and date at job start Tue Mar 31 2020 18:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21303 * 119.99789 * 2 1 4 4 C 1.46765 * 120.00147 * 180.02562 * 2 1 3 5 5 C 1.40003 * 120.22748 * 5.21842 * 4 2 1 6 6 C 1.37689 * 119.88972 * 179.97438 * 5 4 2 7 7 C 1.38641 * 120.37069 * 0.02562 * 6 5 4 8 8 C 1.38023 * 120.47154 * 0.02562 * 7 6 5 9 9 C 1.38837 * 120.09374 * 359.97438 * 8 7 6 10 10 N 1.39144 * 120.18298 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00304 * 25.20366 * 10 9 8 12 12 O 1.21281 * 119.99738 * 5.56797 * 11 10 9 13 13 C 1.50697 * 120.00404 * 185.57264 * 11 10 9 14 14 H 1.08997 * 109.47007 * 304.99617 * 13 11 10 15 15 C 1.52999 * 109.47208 * 64.99727 * 13 11 10 16 16 O 1.45198 * 109.47156 * 184.99906 * 13 11 10 17 17 C 1.34229 * 116.99725 * 150.00304 * 16 13 11 18 18 O 1.20825 * 120.00326 * 359.97438 * 17 16 13 19 19 C 1.50709 * 119.99920 * 180.02562 * 17 16 13 20 20 C 1.52990 * 109.47131 * 179.97438 * 19 17 16 21 21 C 1.50709 * 109.47131 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99409 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99917 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99960 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 119.99631 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47330 * 89.99562 * 25 23 21 27 27 H 1.48506 * 109.47153 * 209.99414 * 25 23 21 28 28 H 1.48500 * 109.47491 * 329.99815 * 25 23 21 29 29 H 1.09005 * 109.46684 * 269.99558 * 1 2 3 30 30 H 1.08994 * 109.47352 * 29.99936 * 1 2 3 31 31 H 1.09001 * 109.46930 * 150.00017 * 1 2 3 32 32 H 1.07991 * 120.05363 * 0.25708 * 5 4 2 33 33 H 1.07994 * 119.81484 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.76866 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.95184 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99902 * 205.19976 * 10 9 8 37 37 H 1.08996 * 109.47193 * 180.02562 * 15 13 11 38 38 H 1.09005 * 109.46820 * 299.99721 * 15 13 11 39 39 H 1.08997 * 109.47227 * 60.00024 * 15 13 11 40 40 H 1.08999 * 109.46463 * 299.99470 * 19 17 16 41 41 H 1.09000 * 109.46948 * 59.98700 * 19 17 16 42 42 H 1.08999 * 109.47239 * 299.99271 * 20 19 17 43 43 H 1.09000 * 109.48041 * 59.99644 * 20 19 17 44 44 H 0.97000 * 119.99662 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2710 -0.0006 5 6 1.5500 -2.4837 -0.1111 6 6 2.2455 -3.6720 -0.1115 7 6 3.6276 -3.6753 -0.0023 8 6 4.3238 -2.4887 0.1086 9 6 3.6421 -1.2792 0.1110 10 7 4.3420 -0.0819 0.2232 11 6 5.6294 -0.0144 -0.1700 12 8 6.1479 -0.9663 -0.7140 13 6 6.4246 1.2436 0.0665 14 1 5.9015 2.0923 -0.3741 15 6 6.5865 1.4694 1.5710 16 8 7.7341 1.1110 -0.5467 17 6 8.3186 2.2370 -0.9850 18 8 7.7545 3.2983 -0.8609 19 6 9.6779 2.1774 -1.6331 20 6 10.1117 3.5873 -2.0387 21 6 11.4708 3.5276 -2.6874 22 1 11.9747 2.5789 -2.7986 23 6 12.0711 4.6843 -3.1377 24 7 11.4575 5.8395 -3.0017 25 14 13.7559 4.6103 -3.9410 26 1 13.5983 4.4171 -5.4049 27 1 14.4826 5.8798 -3.6847 28 1 14.5262 3.4754 -3.3721 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4738 -2.4869 -0.2006 33 1 1.7115 -4.6067 -0.1972 34 1 4.1634 -4.6131 -0.0032 35 1 5.4004 -2.5011 0.1935 36 1 3.9034 0.7043 0.5843 37 1 7.1613 2.3796 1.7421 38 1 5.6035 1.5691 2.0313 39 1 7.1097 0.6207 2.0116 40 1 10.3987 1.7639 -0.9277 41 1 9.6309 1.5431 -2.5183 42 1 9.3908 4.0004 -2.7442 43 1 10.1586 4.2219 -1.1538 44 1 11.8797 6.6532 -3.3189 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:55 Heat of formation + Delta-G solvation = -154.003258 kcal Electronic energy + Delta-G solvation = -27649.381036 eV Core-core repulsion = 23531.267947 eV Total energy + Delta-G solvation = -4118.113089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40236 -41.60859 -40.42489 -39.04885 -37.78513 -36.14470 -35.68706 -33.67401 -33.10049 -32.88277 -30.59943 -30.08957 -28.15913 -26.25252 -24.89994 -24.55618 -23.35708 -21.73662 -21.53669 -21.01011 -19.33345 -19.11819 -18.39684 -18.17313 -17.70141 -17.46348 -17.11668 -16.72068 -16.49552 -16.21946 -16.02684 -15.71204 -15.41249 -15.13626 -15.04891 -14.61586 -14.51142 -14.29992 -14.10362 -13.75839 -13.55034 -13.30533 -13.13591 -13.05680 -12.97278 -12.87498 -12.81152 -12.53161 -12.45541 -12.12361 -12.01612 -11.81916 -11.79476 -11.55018 -11.32104 -11.06269 -10.68278 -10.59448 -10.03985 -9.26235 -8.21763 -6.35515 -0.46603 0.22896 0.99265 1.14565 1.22613 1.36116 1.42545 1.44633 1.55947 2.04427 2.42162 2.78040 3.03684 3.11960 3.16703 3.56429 3.67827 3.73654 3.79101 4.03818 4.11672 4.31450 4.32643 4.36658 4.39052 4.41486 4.48295 4.49777 4.58903 4.68224 4.82692 4.90374 4.94693 5.01467 5.18026 5.19684 5.26087 5.34035 5.44116 5.49482 5.51756 5.78036 5.90535 6.07318 6.10924 6.41816 6.64002 6.72710 6.82148 7.34503 8.90892 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.002088 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.145588 B =13405.905083 C =14016.718456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.396 3.604 3 O -0.510 6.510 4 C -0.226 4.226 5 C -0.037 4.037 6 C -0.148 4.148 7 C -0.062 4.062 8 C -0.176 4.176 9 C 0.181 3.819 10 N -0.649 5.649 11 C 0.522 3.478 12 O -0.525 6.525 13 C 0.060 3.940 14 H 0.108 0.892 15 C -0.157 4.157 16 O -0.337 6.337 17 C 0.467 3.533 18 O -0.532 6.532 19 C -0.093 4.093 20 C 0.040 3.960 21 C -0.545 4.545 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.935 5.935 25 Si 0.975 3.025 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.257 1.257 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.427 0.573 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.112 0.888 42 H -0.010 1.010 43 H -0.005 1.005 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.551 -22.013 11.055 36.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.279 3.721 3 O -0.390 6.390 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.166 4.166 7 C -0.081 4.081 8 C -0.196 4.196 9 C 0.085 3.915 10 N -0.300 5.300 11 C 0.309 3.691 12 O -0.401 6.401 13 C 0.002 3.998 14 H 0.125 0.875 15 C -0.215 4.215 16 O -0.254 6.254 17 C 0.312 3.688 18 O -0.421 6.421 19 C -0.131 4.131 20 C 0.003 3.997 21 C -0.583 4.583 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.799 3.201 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.180 1.180 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.272 0.728 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.009 0.991 43 H 0.013 0.987 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.012 -21.566 10.721 35.449 hybrid contribution 0.817 1.167 -0.324 1.460 sum -25.195 -20.400 10.397 34.044 Atomic orbital electron populations 1.22260 0.89537 1.06438 1.06576 1.23075 0.94033 0.86263 0.68699 1.90374 1.72619 1.35824 1.40196 1.20530 0.91341 0.97464 1.13611 1.21794 1.01882 0.89430 0.92437 1.21571 0.93589 0.99810 1.01664 1.21666 0.95448 0.97608 0.93346 1.21471 1.01533 0.91651 1.04928 1.18348 0.91139 0.85796 0.96253 1.43664 1.10934 1.13915 1.61526 1.20444 0.82100 0.89005 0.77516 1.90686 1.70404 1.38480 1.40487 1.22548 0.83196 0.96445 0.97611 0.87465 1.22157 1.05438 1.04204 0.89662 1.86659 1.31744 1.36559 1.70394 1.24669 0.88897 0.81050 0.74195 1.90622 1.65249 1.31803 1.54443 1.21559 0.88043 1.01779 1.01676 1.18801 0.95460 0.90179 0.95276 1.21627 1.02980 0.94459 1.39246 0.90570 1.26097 1.02639 0.94902 0.96540 1.70153 1.40451 0.99077 1.47739 0.85298 0.78253 0.77913 0.78656 1.19773 1.20963 1.18035 0.86091 0.89464 0.86534 0.80334 0.81526 0.83173 0.85469 0.72826 0.90740 0.87605 0.89934 0.86302 0.86989 0.99146 0.98660 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 9.86 71.24 0.70 -0.33 16 2 C 0.40 6.12 7.20 27.92 0.20 6.32 16 3 O -0.51 -11.86 14.57 -3.10 -0.05 -11.90 16 4 C -0.23 -3.60 5.88 -20.05 -0.12 -3.72 16 5 C -0.04 -0.31 9.39 22.57 0.21 -0.10 16 6 C -0.15 -1.23 10.02 22.24 0.22 -1.01 16 7 C -0.06 -0.86 10.03 22.31 0.22 -0.64 16 8 C -0.18 -3.84 8.70 22.36 0.19 -3.65 16 9 C 0.18 4.08 6.44 38.69 0.25 4.33 16 10 N -0.65 -16.20 4.81 -302.83 -1.46 -17.66 16 11 C 0.52 15.76 6.98 87.66 0.61 16.37 16 12 O -0.53 -18.78 13.69 15.72 0.22 -18.57 16 13 C 0.06 1.86 2.98 29.85 0.09 1.95 16 14 H 0.11 3.43 7.16 -2.39 -0.02 3.41 16 15 C -0.16 -3.70 9.50 71.98 0.68 -3.02 16 16 O -0.34 -12.47 9.42 -45.07 -0.42 -12.89 16 17 C 0.47 19.62 7.93 71.24 0.56 20.18 16 18 O -0.53 -25.31 15.20 21.97 0.33 -24.98 16 19 C -0.09 -4.00 5.75 29.85 0.17 -3.83 16 20 C 0.04 2.23 4.26 29.85 0.13 2.35 16 21 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 22 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 23 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 24 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 25 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 29 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 -0.06 6.28 -2.39 -0.01 -0.08 16 32 H 0.18 -0.10 6.25 -2.91 -0.02 -0.12 16 33 H 0.17 0.22 8.06 -2.91 -0.02 0.19 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.13 3.40 5.81 -2.91 -0.02 3.38 16 36 H 0.43 9.80 6.00 -92.71 -0.56 9.24 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 1.84 8.12 -2.38 -0.02 1.82 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 41 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 42 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 43 H -0.01 -0.31 8.10 -2.39 -0.02 -0.33 16 44 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.96 378.14 6.25 -76.72 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.48 Total: 16.70 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.83 Total: 4.50 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.17 Total: -76.16 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: 0.08 Total: -68.34 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.96 6.25 -76.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.287 kcal (2) G-P(sol) polarization free energy of solvation -82.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds