Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21303 * 120.00245 * 2 1 4 4 C 1.46764 * 119.99942 * 179.97438 * 2 1 3 5 5 C 1.40004 * 120.22945 * 4.81391 * 4 2 1 6 6 C 1.37689 * 119.89389 * 180.02562 * 5 4 2 7 7 C 1.38645 * 120.36555 * 359.74741 * 6 5 4 8 8 C 1.38020 * 120.47286 * 0.50907 * 7 6 5 9 9 C 1.38833 * 120.09546 * 359.49146 * 8 7 6 10 10 N 1.39138 * 120.18772 * 180.27364 * 9 8 7 11 11 C 1.34774 * 120.00018 * 324.63771 * 10 9 8 12 12 O 1.21277 * 119.99896 * 4.44020 * 11 10 9 13 13 C 1.50700 * 120.00353 * 184.44348 * 11 10 9 14 14 H 1.09009 * 109.47250 * 55.00046 * 13 11 10 15 15 C 1.52998 * 109.47155 * 294.99961 * 13 11 10 16 16 O 1.45197 * 109.47630 * 174.99891 * 13 11 10 17 17 C 1.34229 * 117.00412 * 210.00388 * 16 13 11 18 18 O 1.20829 * 120.00051 * 359.97438 * 17 16 13 19 19 C 1.50695 * 120.00403 * 179.97438 * 17 16 13 20 20 C 1.52999 * 109.47456 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47129 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00277 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00140 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99679 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00398 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46887 * 59.99461 * 25 23 21 27 27 H 1.48493 * 109.47433 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47181 * 300.00002 * 25 23 21 29 29 H 1.09002 * 109.46577 * 269.99795 * 1 2 3 30 30 H 1.08995 * 109.47246 * 29.99944 * 1 2 3 31 31 H 1.09001 * 109.47157 * 150.00362 * 1 2 3 32 32 H 1.07992 * 120.05660 * 0.02562 * 5 4 2 33 33 H 1.07991 * 119.81956 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.76498 * 180.27707 * 7 6 5 35 35 H 1.07998 * 119.95303 * 179.76450 * 8 7 6 36 36 H 0.97003 * 120.00216 * 144.63610 * 10 9 8 37 37 H 1.09003 * 109.47546 * 179.97438 * 15 13 11 38 38 H 1.08997 * 109.47156 * 299.99809 * 15 13 11 39 39 H 1.09007 * 109.46863 * 59.99983 * 15 13 11 40 40 H 1.09008 * 109.47170 * 300.00159 * 19 17 16 41 41 H 1.08997 * 109.47075 * 59.99271 * 19 17 16 42 42 H 1.08997 * 109.47331 * 299.99924 * 20 19 17 43 43 H 1.09005 * 109.46907 * 60.00343 * 20 19 17 44 44 H 0.97005 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2408 -1.2710 0.0006 5 6 1.5494 -2.4842 -0.1004 6 6 2.2447 -3.6726 -0.0987 7 6 3.6278 -3.6752 -0.0026 8 6 4.3244 -2.4884 0.1029 9 6 3.6428 -1.2788 0.1030 10 7 4.3435 -0.0810 0.2036 11 6 5.4532 -0.0113 0.9653 12 8 5.8866 -1.0107 1.4983 13 6 6.1554 1.3086 1.1550 14 1 5.4479 2.0451 1.5364 15 6 6.7149 1.7860 -0.1866 16 8 7.2432 1.1464 2.1029 17 6 7.5657 2.2145 2.8491 18 8 6.9593 3.2509 2.7144 19 6 8.6839 2.1212 3.8550 20 6 8.8449 3.4668 4.5651 21 6 9.9628 3.3732 5.5713 22 1 10.5045 2.4467 5.6920 23 6 10.2939 4.4703 6.3380 24 7 9.6339 5.5983 6.1914 25 14 11.6801 4.3546 7.5848 26 1 12.9450 4.0087 6.8880 27 1 11.8363 5.6605 8.2741 28 1 11.3613 3.3024 8.5831 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4723 -2.4879 -0.1795 33 1 1.7101 -4.6077 -0.1762 34 1 4.1638 -4.6128 -0.0067 35 1 5.4014 -2.5004 0.1810 36 1 4.0334 0.7040 -0.2746 37 1 7.2224 2.7409 -0.0496 38 1 7.4223 1.0496 -0.5680 39 1 5.8982 1.9078 -0.8982 40 1 8.4499 1.3489 4.5878 41 1 9.6123 1.8672 3.3435 42 1 9.0791 4.2387 3.8321 43 1 7.9165 3.7210 5.0766 44 1 9.8671 6.3703 6.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = -134.192658 kcal Electronic energy + Delta-G solvation = -27685.953343 eV Core-core repulsion = 23568.699306 eV Total energy + Delta-G solvation = -4117.254037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37474 -40.27825 -39.36722 -38.31921 -36.25092 -35.15728 -33.59255 -32.53292 -32.33530 -31.02204 -29.92516 -29.50569 -26.20674 -25.08639 -24.25170 -23.17988 -21.96895 -20.78315 -20.26036 -19.81544 -18.24240 -17.70967 -17.31397 -16.90723 -16.32246 -16.15355 -15.91005 -15.57875 -15.39609 -15.07886 -14.90544 -14.60850 -14.45664 -14.20351 -13.96957 -13.53431 -13.15813 -13.01143 -12.70807 -12.60818 -12.53977 -12.44094 -12.31336 -12.18275 -11.98056 -11.62316 -11.21079 -10.93306 -10.87242 -10.70502 -10.63667 -10.17120 -10.03937 -9.98796 -9.85529 -9.56464 -9.39848 -9.18506 -8.59158 -8.36406 -6.00457 -4.05282 0.18452 0.89584 1.98011 2.17861 2.34997 2.76322 3.27866 3.34387 3.37830 3.38798 3.41630 3.59869 4.24766 4.30271 4.45443 4.51895 4.61101 4.71338 4.80872 4.87858 4.92239 4.98805 4.99996 5.10395 5.14425 5.34898 5.45280 5.48755 5.51032 5.60294 5.77755 5.82772 5.89643 6.00830 6.08119 6.13112 6.20742 6.51911 6.58250 6.87587 6.97048 7.10584 7.66803 7.73543 7.75993 7.98614 8.21333 8.38178 9.01402 9.58618 11.10518 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002127 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.750262 B =13163.467478 C =13672.185984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.399 3.601 3 O -0.466 6.466 4 C -0.210 4.210 5 C -0.054 4.054 6 C -0.153 4.153 7 C -0.064 4.064 8 C -0.139 4.139 9 C 0.214 3.786 10 N -0.663 5.663 11 C 0.520 3.480 12 O -0.494 6.494 13 C 0.069 3.931 14 H 0.114 0.886 15 C -0.165 4.165 16 O -0.337 6.337 17 C 0.458 3.542 18 O -0.502 6.502 19 C -0.101 4.101 20 C 0.034 3.966 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.890 5.890 25 Si 0.897 3.103 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.424 0.576 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 -18.235 -18.609 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.280 3.720 3 O -0.343 6.343 4 C -0.213 4.213 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.083 4.083 8 C -0.160 4.160 9 C 0.117 3.883 10 N -0.314 5.314 11 C 0.307 3.693 12 O -0.367 6.367 13 C 0.010 3.990 14 H 0.132 0.868 15 C -0.222 4.222 16 O -0.254 6.254 17 C 0.301 3.699 18 O -0.388 6.388 19 C -0.139 4.139 20 C -0.003 4.003 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.143 4.143 24 N -0.528 5.528 25 Si 0.724 3.276 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.267 0.733 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.039 -17.787 -18.181 31.772 hybrid contribution 0.360 0.351 0.469 0.688 sum -18.679 -17.436 -17.712 31.091 Atomic orbital electron populations 1.22210 0.93233 1.05012 1.05053 1.22379 0.92029 0.87135 0.70483 1.90409 1.71592 1.34539 1.37787 1.20340 0.92058 0.95851 1.13096 1.21294 0.99908 0.90799 0.95260 1.21117 0.94410 0.98191 1.03414 1.21359 0.94304 0.98056 0.94566 1.21418 1.01957 0.90662 1.01924 1.17940 0.89453 0.86470 0.94463 1.43691 1.26401 1.13085 1.48250 1.20580 0.79869 0.90967 0.77861 1.90726 1.63517 1.36461 1.45948 1.22210 0.90708 0.94542 0.91553 0.86815 1.22159 1.02560 1.03490 0.94011 1.86725 1.48496 1.41818 1.48394 1.24989 0.84646 0.80664 0.79570 1.90634 1.51772 1.30303 1.66115 1.21802 0.92798 1.05009 0.94275 1.19027 0.97806 0.88549 0.94965 1.21116 1.17285 0.97750 1.20550 0.92302 1.25022 0.96698 0.95328 0.97283 1.69984 1.40600 1.01830 1.40405 0.86587 0.82398 0.77218 0.81372 1.20149 1.21269 1.20147 0.88222 0.89160 0.89418 0.84550 0.85183 0.85010 0.83488 0.73304 0.89846 0.90774 0.90516 0.88712 0.88712 0.95522 0.95563 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.92 9.85 36.01 0.35 -0.56 16 2 C 0.40 3.44 7.20 -30.86 -0.22 3.22 16 3 O -0.47 -5.40 14.65 5.54 0.08 -5.31 16 4 C -0.21 -1.86 5.88 -104.91 -0.62 -2.47 16 5 C -0.05 -0.33 9.39 -39.12 -0.37 -0.70 16 6 C -0.15 -0.93 10.02 -39.63 -0.40 -1.32 16 7 C -0.06 -0.49 10.03 -39.51 -0.40 -0.89 16 8 C -0.14 -1.47 8.68 -39.44 -0.34 -1.81 16 9 C 0.21 2.37 6.30 -83.44 -0.53 1.85 16 10 N -0.66 -7.85 4.63 -9.65 -0.04 -7.90 16 11 C 0.52 7.48 7.02 -10.99 -0.08 7.41 16 12 O -0.49 -8.43 13.96 -14.05 -0.20 -8.62 16 13 C 0.07 1.02 2.98 -27.88 -0.08 0.94 16 14 H 0.11 1.73 7.16 -51.92 -0.37 1.36 16 15 C -0.16 -1.92 9.49 37.16 0.35 -1.57 16 16 O -0.34 -6.09 9.42 -45.89 -0.43 -6.52 16 17 C 0.46 9.33 7.93 36.00 0.29 9.62 16 18 O -0.50 -11.40 15.20 -18.75 -0.29 -11.69 16 19 C -0.10 -2.15 5.75 -27.89 -0.16 -2.31 16 20 C 0.03 0.90 4.26 -27.89 -0.12 0.78 16 21 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 25 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.19 6.30 -51.93 -0.33 -0.14 16 32 H 0.14 0.39 6.26 -52.49 -0.33 0.06 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.15 1.75 6.24 -52.49 -0.33 1.43 16 36 H 0.42 4.54 5.98 -40.82 -0.24 4.30 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.68 7.79 -51.92 -0.40 0.27 16 40 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 41 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -35.96 378.29 -7.95 -43.91 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.77 Total: 1.76 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.73 Total: -1.51 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.69 Total: -34.39 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.83 Total: -32.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.96 -7.95 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.283 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds