Wall clock time and date at job start Tue Mar 31 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21303 * 120.00245 * 2 1 4 4 C 1.46764 * 119.99942 * 179.97438 * 2 1 3 5 5 C 1.40004 * 120.22945 * 4.81391 * 4 2 1 6 6 C 1.37689 * 119.89389 * 180.02562 * 5 4 2 7 7 C 1.38645 * 120.36555 * 359.74741 * 6 5 4 8 8 C 1.38020 * 120.47286 * 0.50907 * 7 6 5 9 9 C 1.38833 * 120.09546 * 359.49146 * 8 7 6 10 10 N 1.39138 * 120.18772 * 180.27364 * 9 8 7 11 11 C 1.34774 * 120.00018 * 324.63771 * 10 9 8 12 12 O 1.21277 * 119.99896 * 4.44020 * 11 10 9 13 13 C 1.50700 * 120.00353 * 184.44348 * 11 10 9 14 14 H 1.09009 * 109.47250 * 55.00046 * 13 11 10 15 15 C 1.52998 * 109.47155 * 294.99961 * 13 11 10 16 16 O 1.45197 * 109.47630 * 174.99891 * 13 11 10 17 17 C 1.34229 * 117.00412 * 210.00388 * 16 13 11 18 18 O 1.20829 * 120.00051 * 359.97438 * 17 16 13 19 19 C 1.50695 * 120.00403 * 179.97438 * 17 16 13 20 20 C 1.52999 * 109.47456 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47129 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00277 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00140 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99679 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00398 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46887 * 59.99461 * 25 23 21 27 27 H 1.48493 * 109.47433 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47181 * 300.00002 * 25 23 21 29 29 H 1.09002 * 109.46577 * 269.99795 * 1 2 3 30 30 H 1.08995 * 109.47246 * 29.99944 * 1 2 3 31 31 H 1.09001 * 109.47157 * 150.00362 * 1 2 3 32 32 H 1.07992 * 120.05660 * 0.02562 * 5 4 2 33 33 H 1.07991 * 119.81956 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.76498 * 180.27707 * 7 6 5 35 35 H 1.07998 * 119.95303 * 179.76450 * 8 7 6 36 36 H 0.97003 * 120.00216 * 144.63610 * 10 9 8 37 37 H 1.09003 * 109.47546 * 179.97438 * 15 13 11 38 38 H 1.08997 * 109.47156 * 299.99809 * 15 13 11 39 39 H 1.09007 * 109.46863 * 59.99983 * 15 13 11 40 40 H 1.09008 * 109.47170 * 300.00159 * 19 17 16 41 41 H 1.08997 * 109.47075 * 59.99271 * 19 17 16 42 42 H 1.08997 * 109.47331 * 299.99924 * 20 19 17 43 43 H 1.09005 * 109.46907 * 60.00343 * 20 19 17 44 44 H 0.97005 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2408 -1.2710 0.0006 5 6 1.5494 -2.4842 -0.1004 6 6 2.2447 -3.6726 -0.0987 7 6 3.6278 -3.6752 -0.0026 8 6 4.3244 -2.4884 0.1029 9 6 3.6428 -1.2788 0.1030 10 7 4.3435 -0.0810 0.2036 11 6 5.4532 -0.0113 0.9653 12 8 5.8866 -1.0107 1.4983 13 6 6.1554 1.3086 1.1550 14 1 5.4479 2.0451 1.5364 15 6 6.7149 1.7860 -0.1866 16 8 7.2432 1.1464 2.1029 17 6 7.5657 2.2145 2.8491 18 8 6.9593 3.2509 2.7144 19 6 8.6839 2.1212 3.8550 20 6 8.8449 3.4668 4.5651 21 6 9.9628 3.3732 5.5713 22 1 10.5045 2.4467 5.6920 23 6 10.2939 4.4703 6.3380 24 7 9.6339 5.5983 6.1914 25 14 11.6801 4.3546 7.5848 26 1 12.9450 4.0087 6.8880 27 1 11.8363 5.6605 8.2741 28 1 11.3613 3.3024 8.5831 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4723 -2.4879 -0.1795 33 1 1.7101 -4.6077 -0.1762 34 1 4.1638 -4.6128 -0.0067 35 1 5.4014 -2.5004 0.1810 36 1 4.0334 0.7040 -0.2746 37 1 7.2224 2.7409 -0.0496 38 1 7.4223 1.0496 -0.5680 39 1 5.8982 1.9078 -0.8982 40 1 8.4499 1.3489 4.5878 41 1 9.6123 1.8672 3.3435 42 1 9.0791 4.2387 3.8321 43 1 7.9165 3.7210 5.0766 44 1 9.8671 6.3703 6.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:58 Heat of formation + Delta-G solvation = -155.850399 kcal Electronic energy + Delta-G solvation = -27686.892494 eV Core-core repulsion = 23568.699306 eV Total energy + Delta-G solvation = -4118.193187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35745 -41.59264 -40.39715 -39.05267 -37.77893 -36.12046 -35.68522 -33.66838 -33.10468 -32.88035 -30.59008 -30.08716 -28.15709 -26.24562 -24.87646 -24.54389 -23.35226 -21.72156 -21.51098 -21.00859 -19.32232 -19.15120 -18.39243 -18.18806 -17.66656 -17.44687 -17.03345 -16.80467 -16.49735 -16.16797 -16.02557 -15.73487 -15.41375 -15.15574 -15.02810 -14.66407 -14.50808 -14.29184 -14.02529 -13.73524 -13.54770 -13.30490 -13.13229 -13.04103 -12.96873 -12.86544 -12.79843 -12.56254 -12.46854 -12.11516 -12.00840 -11.79741 -11.69625 -11.54906 -11.33939 -11.08251 -10.68819 -10.58424 -10.03648 -9.34139 -8.21425 -6.35350 -0.46587 0.23563 0.98041 1.14216 1.24584 1.36794 1.42628 1.46627 1.54466 2.05563 2.42416 2.75509 3.04137 3.12109 3.19715 3.57115 3.69020 3.74663 3.79560 4.04285 4.11526 4.31608 4.32716 4.36408 4.38941 4.41235 4.48721 4.50002 4.58506 4.66191 4.82961 4.91003 4.94358 5.03837 5.17948 5.19180 5.26124 5.34068 5.43940 5.47979 5.51746 5.78009 5.89370 6.07088 6.11032 6.42935 6.64311 6.74948 6.82102 7.34618 8.90990 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002127 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.750262 B =13163.467478 C =13672.185984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.394 3.606 3 O -0.507 6.507 4 C -0.219 4.219 5 C -0.042 4.042 6 C -0.142 4.142 7 C -0.066 4.066 8 C -0.162 4.162 9 C 0.175 3.825 10 N -0.651 5.651 11 C 0.523 3.477 12 O -0.529 6.529 13 C 0.061 3.939 14 H 0.107 0.893 15 C -0.159 4.159 16 O -0.338 6.338 17 C 0.467 3.533 18 O -0.533 6.533 19 C -0.093 4.093 20 C 0.041 3.959 21 C -0.547 4.547 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.975 3.025 26 H -0.262 1.262 27 H -0.286 1.286 28 H -0.264 1.264 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.427 0.573 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.119 0.881 42 H -0.005 1.005 43 H -0.010 1.010 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 -21.044 -19.212 35.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.277 3.723 3 O -0.387 6.387 4 C -0.223 4.223 5 C -0.060 4.060 6 C -0.161 4.161 7 C -0.085 4.085 8 C -0.183 4.183 9 C 0.079 3.921 10 N -0.302 5.302 11 C 0.310 3.690 12 O -0.404 6.404 13 C 0.003 3.997 14 H 0.125 0.875 15 C -0.216 4.216 16 O -0.254 6.254 17 C 0.312 3.688 18 O -0.421 6.421 19 C -0.131 4.131 20 C 0.003 3.997 21 C -0.584 4.584 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.574 5.574 25 Si 0.799 3.201 26 H -0.187 1.187 27 H -0.211 1.211 28 H -0.189 1.189 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.196 0.804 33 H 0.186 0.814 34 H 0.169 0.831 35 H 0.141 0.859 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.013 0.987 43 H 0.009 0.991 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.554 -20.646 -18.825 34.686 hybrid contribution 0.650 1.106 0.553 1.397 sum -19.904 -19.541 -18.273 33.345 Atomic orbital electron populations 1.22260 0.89747 1.06732 1.06155 1.23052 0.93947 0.86379 0.68919 1.90394 1.72702 1.35761 1.39824 1.20627 0.91155 0.97394 1.13089 1.21807 1.01878 0.89463 0.92818 1.21592 0.93639 0.99780 1.01058 1.21673 0.95523 0.97654 0.93605 1.21375 1.01173 0.91922 1.03805 1.18295 0.90736 0.86008 0.97076 1.43518 1.25430 1.13893 1.47402 1.20420 0.80420 0.90110 0.78005 1.90707 1.64705 1.37241 1.47751 1.22543 0.89879 0.95118 0.92169 0.87541 1.22171 1.03689 1.02940 0.92776 1.86656 1.49538 1.40496 1.48706 1.24667 0.84103 0.80580 0.79473 1.90624 1.52831 1.31548 1.67142 1.21558 0.94468 1.02131 0.94901 1.18794 0.95886 0.90712 0.94275 1.21595 1.17597 0.98525 1.20714 0.90578 1.26100 0.99612 0.94796 0.99630 1.70150 1.42661 1.02825 1.41773 0.85351 0.78894 0.77417 0.78470 1.18680 1.21140 1.18864 0.87119 0.89052 0.86156 0.80380 0.81450 0.83064 0.85901 0.72893 0.90813 0.89894 0.87536 0.86993 0.86317 0.98697 0.99144 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 9.85 71.24 0.70 -0.52 16 2 C 0.39 6.33 7.20 27.92 0.20 6.53 16 3 O -0.51 -11.92 14.65 -3.10 -0.05 -11.96 16 4 C -0.22 -3.56 5.88 -20.05 -0.12 -3.68 16 5 C -0.04 -0.35 9.39 22.57 0.21 -0.14 16 6 C -0.14 -1.18 10.02 22.24 0.22 -0.95 16 7 C -0.07 -0.90 10.03 22.32 0.22 -0.67 16 8 C -0.16 -3.50 8.68 22.36 0.19 -3.31 16 9 C 0.17 3.93 6.30 38.70 0.24 4.17 16 10 N -0.65 -16.15 4.63 -302.84 -1.40 -17.56 16 11 C 0.52 15.82 7.02 87.66 0.62 16.43 16 12 O -0.53 -18.98 13.96 15.73 0.22 -18.76 16 13 C 0.06 1.90 2.98 29.85 0.09 1.99 16 14 H 0.11 3.46 7.16 -2.38 -0.02 3.44 16 15 C -0.16 -3.76 9.49 71.98 0.68 -3.08 16 16 O -0.34 -12.56 9.42 -45.07 -0.42 -12.98 16 17 C 0.47 19.70 7.93 71.23 0.56 20.26 16 18 O -0.53 -25.44 15.20 21.95 0.33 -25.11 16 19 C -0.09 -4.01 5.75 29.85 0.17 -3.84 16 20 C 0.04 2.26 4.26 29.85 0.13 2.39 16 21 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 22 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 23 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 24 N -0.93 -58.80 13.29 21.45 0.28 -58.51 16 25 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 -0.06 6.30 -2.39 -0.02 -0.08 16 32 H 0.18 -0.04 6.26 -2.91 -0.02 -0.06 16 33 H 0.17 0.19 8.06 -2.92 -0.02 0.17 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.12 3.18 6.24 -2.91 -0.02 3.16 16 36 H 0.43 9.63 5.98 -92.71 -0.55 9.08 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 1.86 7.79 -2.38 -0.02 1.84 16 40 H 0.11 4.43 8.14 -2.38 -0.02 4.41 16 41 H 0.12 4.53 8.14 -2.39 -0.02 4.51 16 42 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 43 H -0.01 -0.61 8.10 -2.38 -0.02 -0.63 16 44 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -82.97 378.29 6.30 -76.67 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.48 Total: 16.85 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.83 Total: 4.81 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.12 Total: -76.07 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: 0.08 Total: -68.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -82.97 6.30 -76.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.179 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds