Wall clock time and date at job start Tue Mar 31 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00118 * 2 1 4 4 N 1.34776 * 119.99811 * 180.02562 * 2 1 3 5 5 C 1.39319 * 119.99926 * 185.27593 * 4 2 1 6 6 C 1.39215 * 119.89612 * 33.59959 * 5 4 2 7 7 C 1.37080 * 120.10027 * 179.70013 * 6 5 4 8 8 C 1.40063 * 119.90005 * 0.27337 * 7 6 5 9 9 C 1.46841 * 120.10154 * 179.97438 * 8 7 6 10 10 O 1.21298 * 120.00315 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99812 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47198 * 320.00838 * 11 9 8 13 13 C 1.53003 * 109.46660 * 80.00313 * 11 9 8 14 14 O 1.45198 * 109.46897 * 200.00155 * 11 9 8 15 15 C 1.34230 * 116.99855 * 150.00306 * 14 11 9 16 16 O 1.20831 * 119.99911 * 359.97438 * 15 14 11 17 17 C 1.50700 * 120.00092 * 179.97438 * 15 14 11 18 18 C 1.53000 * 109.46796 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46796 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99867 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99924 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00346 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46873 * 89.99482 * 23 21 19 25 25 H 1.48494 * 109.47437 * 209.99752 * 23 21 19 26 26 H 1.48505 * 109.46742 * 329.99880 * 23 21 19 27 27 C 1.40054 * 119.79462 * 0.02562 * 8 7 6 28 28 C 1.37088 * 119.90329 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.47725 * 270.00177 * 1 2 3 30 30 H 1.09002 * 109.47070 * 29.99561 * 1 2 3 31 31 H 1.08997 * 109.47235 * 149.99794 * 1 2 3 32 32 H 0.96996 * 120.00068 * 5.28441 * 4 2 1 33 33 H 1.07999 * 119.95086 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.05572 * 180.30004 * 7 6 5 35 35 H 1.09001 * 109.47339 * 60.00260 * 13 11 9 36 36 H 1.09002 * 109.46708 * 179.97438 * 13 11 9 37 37 H 1.08996 * 109.47389 * 299.99561 * 13 11 9 38 38 H 1.08994 * 109.46979 * 299.99715 * 17 15 14 39 39 H 1.08994 * 109.47212 * 60.00449 * 17 15 14 40 40 H 1.09000 * 109.47581 * 300.00024 * 18 17 15 41 41 H 1.08999 * 109.47351 * 60.00368 * 18 17 15 42 42 H 0.97002 * 120.00229 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.04800 * 180.02562 * 27 8 7 44 44 H 1.07995 * 119.95233 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5696 -1.1699 0.1104 6 6 4.2062 -0.1980 0.8774 7 6 5.5720 -0.2003 0.9944 8 6 6.3275 -1.1790 0.3363 9 6 7.7909 -1.1853 0.4581 10 8 8.3472 -0.3424 1.1299 11 6 8.6015 -2.2391 -0.2515 12 1 8.0897 -3.1990 -0.1824 13 6 8.7639 -1.8525 -1.7229 14 8 9.9101 -2.3424 0.3691 15 6 10.5095 -3.5429 0.3311 16 8 9.9586 -4.4766 -0.2026 17 6 11.8694 -3.7262 0.9541 18 6 12.3219 -5.1765 0.7730 19 6 13.6821 -5.3596 1.3954 20 1 14.1747 -4.5250 1.8722 21 6 14.2978 -6.5927 1.3563 22 7 15.4850 -6.7524 1.8991 23 14 13.4462 -8.0362 0.5312 24 1 13.8238 -8.0787 -0.9044 25 1 13.8633 -9.2997 1.1904 26 1 11.9746 -7.8773 0.6515 27 6 5.6830 -2.1509 -0.4393 28 6 4.3167 -2.1409 -0.5506 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6989 -2.0054 -0.0783 33 1 3.6229 0.5563 1.3845 34 1 6.0649 0.5511 1.5935 35 1 9.2757 -0.8926 -1.7921 36 1 9.3506 -2.6145 -2.2361 37 1 7.7816 -1.7750 -2.1888 38 1 12.5835 -3.0600 0.4702 39 1 11.8165 -3.4919 2.0173 40 1 11.6079 -5.8431 1.2565 41 1 12.3749 -5.4104 -0.2903 42 1 15.9180 -7.6200 1.8719 43 1 6.2616 -2.9078 -0.9482 44 1 3.8189 -2.8902 -1.1481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:33 Heat of formation + Delta-G solvation = -136.491547 kcal Electronic energy + Delta-G solvation = -27088.037601 eV Core-core repulsion = 22970.683877 eV Total energy + Delta-G solvation = -4117.353724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23946 -40.58565 -39.58847 -38.29938 -36.30548 -35.39013 -33.64494 -32.76296 -31.48664 -31.47179 -31.05832 -29.27751 -26.62117 -25.42765 -23.91549 -23.16574 -21.75762 -21.23203 -20.04248 -19.79436 -18.52527 -17.82254 -17.56508 -16.96974 -16.79773 -16.17583 -16.04667 -15.98656 -15.19716 -14.91253 -14.81506 -14.48159 -14.21357 -14.05010 -14.00414 -13.63702 -13.48437 -13.20711 -13.08893 -13.02739 -12.74683 -12.63401 -12.60701 -12.33347 -11.80659 -11.61196 -11.45710 -11.03271 -10.95703 -10.75629 -10.53286 -10.32654 -10.18611 -10.04152 -9.80156 -9.63708 -9.49699 -9.25755 -8.69316 -8.55686 -6.06839 -4.06745 0.17001 0.95766 1.74880 2.17611 2.41232 2.61896 2.72384 3.33483 3.37637 3.40438 3.48911 3.79879 4.03009 4.30860 4.42574 4.45800 4.51254 4.69622 4.71145 4.78465 4.81032 4.85907 4.95082 5.02035 5.13932 5.18560 5.27619 5.49027 5.52537 5.55754 5.62912 5.73993 5.87213 5.89651 5.98897 6.00363 6.04403 6.42472 6.45018 6.68664 6.72744 7.22392 7.25554 7.30373 7.42675 7.70459 8.14078 8.47320 8.95891 9.54603 11.05751 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.001911 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.662422 B =14651.254158 C =15169.025094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.177 3.823 6 C -0.135 4.135 7 C -0.035 4.035 8 C -0.180 4.180 9 C 0.400 3.600 10 O -0.425 6.425 11 C 0.040 3.960 12 H 0.110 0.890 13 C -0.164 4.164 14 O -0.340 6.340 15 C 0.458 3.542 16 O -0.511 6.511 17 C -0.096 4.096 18 C -0.001 4.001 19 C -0.527 4.527 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.900 5.900 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.262 1.262 27 C -0.052 4.052 28 C -0.157 4.157 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.139 0.861 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.257 11.748 -6.404 35.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.321 5.321 5 C 0.082 3.918 6 C -0.155 4.155 7 C -0.054 4.054 8 C -0.181 4.181 9 C 0.275 3.725 10 O -0.297 6.297 11 C -0.016 4.016 12 H 0.128 0.872 13 C -0.221 4.221 14 O -0.257 6.257 15 C 0.303 3.697 16 O -0.398 6.398 17 C -0.133 4.133 18 C -0.039 4.039 19 C -0.565 4.565 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.186 1.186 27 C -0.071 4.071 28 C -0.177 4.177 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.251 0.749 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.157 0.843 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -32.660 12.591 -6.167 35.542 hybrid contribution -0.747 -1.472 -0.610 1.760 sum -33.407 11.119 -6.777 35.856 Atomic orbital electron populations 1.21906 0.90271 1.05515 1.05407 1.21116 0.91097 0.83018 0.74948 1.90786 1.70526 1.31146 1.46904 1.43642 1.05275 1.10360 1.72783 1.18024 0.82926 0.96302 0.94576 1.20976 0.94646 1.00146 0.99745 1.21172 0.93001 0.95982 0.95240 1.20292 0.94060 0.99594 1.04187 1.22159 0.88045 0.83906 0.78356 1.90565 1.73532 1.34473 1.31136 1.22885 0.84141 1.00468 0.94127 0.87239 1.22118 1.03706 1.03806 0.92458 1.86741 1.30926 1.36051 1.72018 1.24900 0.88992 0.79356 0.76489 1.90597 1.65452 1.41457 1.42289 1.21572 0.87146 1.02889 1.01690 1.19486 0.97265 0.89369 0.97756 1.21038 1.00485 0.97611 1.37383 0.90599 1.24956 0.94620 0.98688 0.94831 1.69906 1.14597 1.24340 1.44971 0.86802 0.80993 0.81940 0.79845 1.20177 1.21325 1.18616 1.21229 0.94138 0.96506 0.95209 1.20739 0.93923 1.01137 1.01937 0.88173 0.88280 0.89747 0.74871 0.84170 0.84214 0.90837 0.90244 0.90270 0.88126 0.88128 0.95595 0.96021 0.92605 0.84297 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.31 36.00 0.37 0.08 16 2 C 0.51 3.07 7.66 -10.99 -0.08 2.99 16 3 O -0.52 -5.56 14.78 5.56 0.08 -5.48 16 4 N -0.67 -3.21 5.31 -9.85 -0.05 -3.26 16 5 C 0.18 1.35 6.27 -83.73 -0.53 0.83 16 6 C -0.14 -1.28 8.60 -39.64 -0.34 -1.62 16 7 C -0.04 -0.37 9.57 -39.32 -0.38 -0.74 16 8 C -0.18 -1.91 5.87 -105.05 -0.62 -2.53 16 9 C 0.40 5.29 6.37 -30.83 -0.20 5.09 16 10 O -0.42 -6.90 16.60 -13.22 -0.22 -7.12 16 11 C 0.04 0.54 2.16 -27.88 -0.06 0.48 16 12 H 0.11 1.38 6.03 -51.93 -0.31 1.07 16 13 C -0.16 -1.79 9.41 37.16 0.35 -1.44 16 14 O -0.34 -5.77 9.50 -45.66 -0.43 -6.20 16 15 C 0.46 8.62 7.93 36.01 0.29 8.90 16 16 O -0.51 -10.44 15.20 -18.75 -0.29 -10.73 16 17 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 18 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 19 C -0.53 -14.94 9.66 -34.44 -0.33 -15.28 16 20 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 23 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 27 C -0.05 -0.43 8.83 -39.32 -0.35 -0.78 16 28 C -0.16 -1.06 9.92 -39.64 -0.39 -1.45 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.41 0.46 8.81 -40.82 -0.36 0.10 16 33 H 0.14 1.38 6.41 -52.49 -0.34 1.04 16 34 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.64 7.27 -51.93 -0.38 0.26 16 38 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 41 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.14 0.94 6.15 -52.48 -0.32 0.62 16 44 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -37.42 379.03 -7.55 -44.97 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.84 Total: -2.74 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.62 Total: -5.68 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.72 Total: -30.13 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.86 Total: -29.53 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.42 -7.55 -44.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.522 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds