Wall clock time and date at job start Tue Mar 31 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00118 * 2 1 4 4 N 1.34776 * 119.99811 * 180.02562 * 2 1 3 5 5 C 1.39319 * 119.99926 * 185.27593 * 4 2 1 6 6 C 1.39215 * 119.89612 * 33.59959 * 5 4 2 7 7 C 1.37080 * 120.10027 * 179.70013 * 6 5 4 8 8 C 1.40063 * 119.90005 * 0.27337 * 7 6 5 9 9 C 1.46841 * 120.10154 * 179.97438 * 8 7 6 10 10 O 1.21298 * 120.00315 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99812 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47198 * 320.00838 * 11 9 8 13 13 C 1.53003 * 109.46660 * 80.00313 * 11 9 8 14 14 O 1.45198 * 109.46897 * 200.00155 * 11 9 8 15 15 C 1.34230 * 116.99855 * 150.00306 * 14 11 9 16 16 O 1.20831 * 119.99911 * 359.97438 * 15 14 11 17 17 C 1.50700 * 120.00092 * 179.97438 * 15 14 11 18 18 C 1.53000 * 109.46796 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46796 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99867 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99924 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00346 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46873 * 89.99482 * 23 21 19 25 25 H 1.48494 * 109.47437 * 209.99752 * 23 21 19 26 26 H 1.48505 * 109.46742 * 329.99880 * 23 21 19 27 27 C 1.40054 * 119.79462 * 0.02562 * 8 7 6 28 28 C 1.37088 * 119.90329 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.47725 * 270.00177 * 1 2 3 30 30 H 1.09002 * 109.47070 * 29.99561 * 1 2 3 31 31 H 1.08997 * 109.47235 * 149.99794 * 1 2 3 32 32 H 0.96996 * 120.00068 * 5.28441 * 4 2 1 33 33 H 1.07999 * 119.95086 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.05572 * 180.30004 * 7 6 5 35 35 H 1.09001 * 109.47339 * 60.00260 * 13 11 9 36 36 H 1.09002 * 109.46708 * 179.97438 * 13 11 9 37 37 H 1.08996 * 109.47389 * 299.99561 * 13 11 9 38 38 H 1.08994 * 109.46979 * 299.99715 * 17 15 14 39 39 H 1.08994 * 109.47212 * 60.00449 * 17 15 14 40 40 H 1.09000 * 109.47581 * 300.00024 * 18 17 15 41 41 H 1.08999 * 109.47351 * 60.00368 * 18 17 15 42 42 H 0.97002 * 120.00229 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.04800 * 180.02562 * 27 8 7 44 44 H 1.07995 * 119.95233 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5696 -1.1699 0.1104 6 6 4.2062 -0.1980 0.8774 7 6 5.5720 -0.2003 0.9944 8 6 6.3275 -1.1790 0.3363 9 6 7.7909 -1.1853 0.4581 10 8 8.3472 -0.3424 1.1299 11 6 8.6015 -2.2391 -0.2515 12 1 8.0897 -3.1990 -0.1824 13 6 8.7639 -1.8525 -1.7229 14 8 9.9101 -2.3424 0.3691 15 6 10.5095 -3.5429 0.3311 16 8 9.9586 -4.4766 -0.2026 17 6 11.8694 -3.7262 0.9541 18 6 12.3219 -5.1765 0.7730 19 6 13.6821 -5.3596 1.3954 20 1 14.1747 -4.5250 1.8722 21 6 14.2978 -6.5927 1.3563 22 7 15.4850 -6.7524 1.8991 23 14 13.4462 -8.0362 0.5312 24 1 13.8238 -8.0787 -0.9044 25 1 13.8633 -9.2997 1.1904 26 1 11.9746 -7.8773 0.6515 27 6 5.6830 -2.1509 -0.4393 28 6 4.3167 -2.1409 -0.5506 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6989 -2.0054 -0.0783 33 1 3.6229 0.5563 1.3845 34 1 6.0649 0.5511 1.5935 35 1 9.2757 -0.8926 -1.7921 36 1 9.3506 -2.6145 -2.2361 37 1 7.7816 -1.7750 -2.1888 38 1 12.5835 -3.0600 0.4702 39 1 11.8165 -3.4919 2.0173 40 1 11.6079 -5.8431 1.2565 41 1 12.3749 -5.4104 -0.2903 42 1 15.9180 -7.6200 1.8719 43 1 6.2616 -2.9078 -0.9482 44 1 3.8189 -2.8902 -1.1481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:32 Heat of formation + Delta-G solvation = -160.194228 kcal Electronic energy + Delta-G solvation = -27089.065427 eV Core-core repulsion = 22970.683877 eV Total energy + Delta-G solvation = -4118.381550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05708 -41.61358 -40.63379 -39.10726 -37.69136 -36.00317 -35.63629 -33.86374 -33.26035 -32.11270 -31.74318 -29.78320 -28.47169 -26.37160 -24.74293 -24.16593 -23.17631 -21.79402 -21.47757 -20.89878 -19.49124 -19.05560 -18.56837 -18.13886 -17.84621 -17.43796 -17.30667 -16.58703 -16.32409 -16.08646 -15.99702 -15.56527 -15.29822 -15.01714 -14.92948 -14.78403 -14.60321 -14.18695 -14.04964 -13.98958 -13.74524 -13.45995 -13.35585 -13.28671 -13.04891 -12.94126 -12.76150 -12.35432 -12.26991 -12.03545 -11.93371 -11.79389 -11.58075 -11.52695 -11.41737 -11.12774 -10.78188 -10.75782 -10.16250 -9.32836 -8.30796 -6.35894 -0.60803 0.30233 0.99261 1.14366 1.36411 1.37900 1.45225 1.51861 1.59086 2.00257 2.35884 2.67775 2.75310 3.04396 3.55949 3.67627 3.76440 3.84251 3.86100 3.87277 3.96630 4.18314 4.26884 4.31630 4.36157 4.40900 4.52189 4.55874 4.62615 4.64808 4.82641 4.89243 5.00032 5.01794 5.07457 5.14738 5.19055 5.24677 5.29645 5.34364 5.36157 5.58403 5.79294 6.21511 6.26449 6.33317 6.66403 6.75158 7.03426 7.29131 8.84891 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.001911 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.662422 B =14651.254158 C =15169.025094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.504 3.496 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.182 3.818 6 C -0.150 4.150 7 C -0.046 4.046 8 C -0.199 4.199 9 C 0.406 3.594 10 O -0.470 6.470 11 C 0.031 3.969 12 H 0.123 0.877 13 C -0.160 4.160 14 O -0.348 6.348 15 C 0.471 3.529 16 O -0.527 6.527 17 C -0.094 4.094 18 C 0.005 3.995 19 C -0.535 4.535 20 H 0.047 0.953 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.943 3.057 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.254 1.254 27 C -0.045 4.045 28 C -0.146 4.146 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.435 0.565 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.268 0.732 43 H 0.159 0.841 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.858 10.069 -8.374 39.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.307 5.307 5 C 0.085 3.915 6 C -0.170 4.170 7 C -0.065 4.065 8 C -0.201 4.201 9 C 0.285 3.715 10 O -0.345 6.345 11 C -0.024 4.024 12 H 0.141 0.859 13 C -0.216 4.216 14 O -0.265 6.265 15 C 0.316 3.684 16 O -0.416 6.416 17 C -0.132 4.132 18 C -0.033 4.033 19 C -0.573 4.573 20 H 0.065 0.935 21 C -0.185 4.185 22 N -0.584 5.584 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.178 1.178 27 C -0.064 4.064 28 C -0.166 4.166 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.276 0.724 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.177 0.823 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -36.311 10.891 -8.148 38.775 hybrid contribution 0.262 -0.852 0.027 0.891 sum -36.050 10.039 -8.121 38.293 Atomic orbital electron populations 1.21949 0.86552 1.06973 1.06724 1.21991 0.92802 0.82309 0.73329 1.90774 1.71865 1.33116 1.49369 1.43637 1.04148 1.11289 1.71670 1.18204 0.84465 0.95480 0.93333 1.20946 0.94212 1.00988 1.00862 1.21121 0.93572 0.96137 0.95687 1.20125 0.92395 1.01221 1.06316 1.22457 0.89171 0.82866 0.77054 1.90552 1.74435 1.36225 1.33332 1.23315 0.82379 1.01292 0.95425 0.85925 1.22148 1.05610 1.03248 0.90644 1.86689 1.32790 1.34754 1.72284 1.24338 0.88450 0.79648 0.76004 1.90581 1.65863 1.42060 1.43116 1.21365 0.88665 1.00463 1.02690 1.19315 0.94874 0.92097 0.96993 1.21349 1.02148 0.96863 1.36971 0.93506 1.25859 0.95263 1.01807 0.95578 1.70036 1.16300 1.25352 1.46674 0.85760 0.80096 0.78365 0.79116 1.19092 1.20544 1.17764 1.21479 0.95035 0.95749 0.94129 1.21106 0.93260 1.01100 1.01161 0.86730 0.88642 0.86471 0.72371 0.85245 0.85559 0.91324 0.90643 0.86908 0.87009 0.87373 0.96093 0.96035 0.92300 0.82328 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.07 10.31 71.23 0.73 0.67 16 2 C 0.50 5.17 7.66 87.66 0.67 5.85 16 3 O -0.57 -12.23 14.78 -3.02 -0.04 -12.28 16 4 N -0.66 -4.38 5.31 -303.46 -1.61 -5.99 16 5 C 0.18 2.38 6.27 38.42 0.24 2.62 16 6 C -0.15 -2.85 8.60 22.23 0.19 -2.66 16 7 C -0.05 -1.00 9.57 22.44 0.21 -0.78 16 8 C -0.20 -4.10 5.87 -20.14 -0.12 -4.22 16 9 C 0.41 10.71 6.37 27.94 0.18 10.89 16 10 O -0.47 -15.91 16.60 14.85 0.25 -15.66 16 11 C 0.03 0.80 2.16 29.85 0.06 0.87 16 12 H 0.12 2.83 6.03 -2.39 -0.01 2.81 16 13 C -0.16 -3.18 9.41 71.98 0.68 -2.50 16 14 O -0.35 -11.60 9.50 -45.30 -0.43 -12.03 16 15 C 0.47 17.22 7.93 71.24 0.56 17.78 16 16 O -0.53 -20.66 15.20 21.95 0.33 -20.33 16 17 C -0.09 -3.73 5.75 29.85 0.17 -3.55 16 18 C 0.00 0.23 3.33 29.85 0.10 0.33 16 19 C -0.54 -30.71 9.66 25.60 0.25 -30.47 16 20 H 0.05 2.88 7.99 -2.91 -0.02 2.85 16 21 C 0.01 0.75 5.47 84.65 0.46 1.21 16 22 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 23 Si 0.94 45.09 27.47 68.60 1.88 46.97 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 27 C -0.05 -0.62 8.83 22.44 0.20 -0.42 16 28 C -0.15 -1.43 9.92 22.23 0.22 -1.21 16 29 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.44 -0.87 8.81 -92.71 -0.82 -1.69 16 33 H 0.13 2.71 6.41 -2.91 -0.02 2.69 16 34 H 0.13 2.93 7.64 -2.91 -0.02 2.90 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.11 1.46 7.27 -2.39 -0.02 1.44 16 38 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 39 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 40 H 0.02 1.02 7.16 -2.39 -0.02 1.00 16 41 H 0.02 1.03 7.53 -2.39 -0.02 1.01 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.16 1.51 6.15 -2.91 -0.02 1.49 16 44 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -83.90 379.03 5.67 -78.24 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.17 Total: 5.19 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.82 Total: -5.60 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.31 Total: -64.51 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: 0.11 Total: -60.30 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -83.90 5.67 -78.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.955 kcal (2) G-P(sol) polarization free energy of solvation -83.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds