Wall clock time and date at job start Tue Mar 31 2020 18:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21277 * 119.99574 * 2 1 4 4 N 1.34774 * 120.00106 * 180.02562 * 2 1 3 5 5 C 1.39321 * 119.99752 * 185.27759 * 4 2 1 6 6 C 1.39208 * 119.89987 * 33.58950 * 5 4 2 7 7 C 1.37086 * 120.10077 * 180.27373 * 6 5 4 8 8 C 1.40057 * 119.89801 * 359.52608 * 7 6 5 9 9 C 1.46846 * 120.10199 * 180.22646 * 8 7 6 10 10 O 1.21290 * 119.99816 * 180.24808 * 9 8 7 11 11 C 1.50705 * 119.99708 * 0.24644 * 9 8 7 12 12 H 1.08997 * 109.46894 * 45.00371 * 11 9 8 13 13 C 1.52997 * 109.47294 * 285.00013 * 11 9 8 14 14 O 1.45198 * 109.46678 * 164.99936 * 11 9 8 15 15 C 1.34229 * 117.00114 * 210.00055 * 14 11 9 16 16 O 1.20826 * 119.99681 * 0.02562 * 15 14 11 17 17 C 1.50707 * 120.00309 * 180.02562 * 15 14 11 18 18 C 1.52999 * 109.46932 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46730 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00205 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47390 * 59.99406 * 23 21 19 25 25 H 1.48491 * 109.47317 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46756 * 299.99712 * 23 21 19 27 27 C 1.40056 * 119.79488 * 0.47436 * 8 7 6 28 28 C 1.37080 * 119.90224 * 359.75241 * 27 8 7 29 29 H 1.09000 * 109.46687 * 239.99645 * 1 2 3 30 30 H 1.08993 * 109.47266 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47067 * 120.00074 * 1 2 3 32 32 H 0.96996 * 120.00297 * 5.27253 * 4 2 1 33 33 H 1.08008 * 119.95350 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.04986 * 179.72028 * 7 6 5 35 35 H 1.09004 * 109.47047 * 299.99975 * 13 11 9 36 36 H 1.09001 * 109.47056 * 59.99994 * 13 11 9 37 37 H 1.09001 * 109.46788 * 179.97438 * 13 11 9 38 38 H 1.08994 * 109.46969 * 300.00046 * 17 15 14 39 39 H 1.09005 * 109.46563 * 60.00208 * 17 15 14 40 40 H 1.09002 * 109.47372 * 300.00081 * 18 17 15 41 41 H 1.08997 * 109.47243 * 60.00363 * 18 17 15 42 42 H 0.96998 * 120.00224 * 180.02562 * 22 21 19 43 43 H 1.08007 * 120.04851 * 179.77616 * 27 8 7 44 44 H 1.08004 * 119.95225 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5698 -1.1697 0.1105 6 6 4.2064 -0.1977 0.8772 7 6 5.5730 -0.1930 0.9847 8 6 6.3282 -1.1739 0.3297 9 6 7.7921 -1.1760 0.4458 10 8 8.4446 -2.0237 -0.1259 11 6 8.4836 -0.1249 1.2753 12 1 7.9595 -0.0077 2.2238 13 6 8.4768 1.2062 0.5209 14 8 9.8546 -0.5316 1.5270 15 6 10.4139 -0.1127 2.6730 16 8 9.7788 0.5708 3.4407 17 6 11.8340 -0.4949 3.0023 18 6 12.2236 0.1063 4.3542 19 6 13.6439 -0.2754 4.6831 20 1 14.2117 -0.8861 3.9967 21 6 14.2181 0.1541 5.8607 22 7 13.5265 0.8973 6.6968 23 14 15.9788 -0.3184 6.2681 24 1 16.8873 0.2022 5.2152 25 1 16.3569 0.2650 7.5803 26 1 16.0920 -1.7977 6.3325 27 6 5.6833 -2.1497 -0.4406 28 6 4.3166 -2.1439 -0.5462 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6991 -2.0054 -0.0781 33 1 3.6230 0.5562 1.3850 34 1 6.0664 0.5642 1.5761 35 1 9.0010 1.0889 -0.4276 36 1 7.4476 1.5114 0.3319 37 1 8.9766 1.9665 1.1211 38 1 11.9161 -1.5807 3.0507 39 1 12.5013 -0.1141 2.2290 40 1 12.1413 1.1922 4.3062 41 1 11.5563 -0.2748 5.1272 42 1 13.9305 1.1998 7.5251 43 1 6.2619 -2.9060 -0.9504 44 1 3.8184 -2.8958 -1.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:36 Heat of formation + Delta-G solvation = -139.711428 kcal Electronic energy + Delta-G solvation = -27076.870922 eV Core-core repulsion = 22959.377574 eV Total energy + Delta-G solvation = -4117.493349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19701 -40.47995 -39.49571 -38.23555 -36.15280 -35.36542 -33.57924 -32.71201 -31.51465 -31.25585 -30.80220 -29.21575 -26.18725 -25.38210 -23.62093 -23.34491 -22.10184 -21.01835 -20.06469 -19.74824 -18.49208 -17.57620 -17.53904 -16.90714 -16.53333 -16.13806 -15.93079 -15.70616 -15.04354 -14.95658 -14.74346 -14.46839 -14.36761 -14.07443 -13.92885 -13.56775 -13.40319 -13.13356 -12.97337 -12.90713 -12.71129 -12.49321 -12.28548 -12.14712 -11.67311 -11.56697 -11.19335 -10.93105 -10.92388 -10.67230 -10.58973 -10.47459 -10.02677 -9.97304 -9.76501 -9.49158 -9.45485 -9.17171 -8.65045 -8.35599 -5.99711 -4.04480 0.21301 1.00172 1.79586 2.22852 2.44305 2.77666 2.83886 3.34925 3.39221 3.41599 3.41843 3.88059 4.05940 4.36733 4.46293 4.50693 4.59186 4.70439 4.76839 4.85587 4.87075 4.93465 5.00087 5.05058 5.22289 5.25479 5.35659 5.55963 5.64155 5.65715 5.72970 5.77387 5.93870 5.97470 6.01642 6.15037 6.23049 6.46578 6.62383 6.71972 6.91624 7.30939 7.46334 7.67863 7.74853 7.99582 8.24692 8.40557 9.02269 9.59449 11.11257 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.001857 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.559736 B =15075.628668 C =15628.898704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.517 6.517 4 N -0.676 5.676 5 C 0.177 3.823 6 C -0.134 4.134 7 C -0.051 4.051 8 C -0.179 4.179 9 C 0.402 3.598 10 O -0.428 6.428 11 C 0.040 3.960 12 H 0.111 0.889 13 C -0.164 4.164 14 O -0.343 6.343 15 C 0.456 3.544 16 O -0.504 6.504 17 C -0.103 4.103 18 C 0.034 3.966 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.036 4.036 28 C -0.160 4.160 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.414 0.586 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.262 0.738 43 H 0.140 0.860 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.889 -5.425 -16.835 33.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.392 6.392 4 N -0.321 5.321 5 C 0.082 3.918 6 C -0.154 4.154 7 C -0.070 4.070 8 C -0.181 4.181 9 C 0.277 3.723 10 O -0.301 6.301 11 C -0.017 4.017 12 H 0.129 0.871 13 C -0.222 4.222 14 O -0.261 6.261 15 C 0.300 3.700 16 O -0.391 6.391 17 C -0.140 4.140 18 C -0.004 4.004 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.054 4.054 28 C -0.180 4.180 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.158 0.842 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.403 -4.773 -16.729 33.308 hybrid contribution 0.458 -0.538 0.349 0.788 sum -27.946 -5.311 -16.380 32.825 Atomic orbital electron populations 1.21946 0.90278 1.06319 1.04746 1.21116 0.91101 0.83009 0.74988 1.90787 1.70588 1.31116 1.46677 1.43592 1.05274 1.10349 1.72918 1.18016 0.82889 0.96320 0.94572 1.20985 0.94703 1.00133 0.99565 1.21355 0.93488 0.96258 0.95911 1.20296 0.94073 0.99478 1.04263 1.22178 0.87987 0.83422 0.78719 1.90549 1.67783 1.34140 1.37579 1.22847 0.83277 0.94893 1.00661 0.87145 1.22147 1.03707 0.94838 1.01480 1.86737 1.26900 1.70712 1.41709 1.24932 0.91159 0.76409 0.77461 1.90618 1.63754 1.35803 1.48888 1.21792 0.85658 1.03412 1.03160 1.19023 0.96313 0.96846 0.88172 1.21126 0.97783 1.33024 1.04774 0.92316 1.25014 0.98033 0.95020 0.96227 1.69982 1.36893 1.35272 1.10690 0.86593 0.84682 0.78781 0.77552 1.20156 1.21274 1.20162 1.21058 0.93659 0.96274 0.94453 1.20726 0.93867 1.01196 1.02197 0.88780 0.88321 0.88948 0.74937 0.84083 0.84284 0.90963 0.90226 0.90177 0.88815 0.88786 0.95538 0.95570 0.92808 0.84181 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.34 10.32 36.01 0.37 0.03 16 2 C 0.51 3.21 7.66 -10.98 -0.08 3.13 16 3 O -0.52 -5.68 14.76 5.56 0.08 -5.60 16 4 N -0.68 -3.37 5.31 -9.85 -0.05 -3.42 16 5 C 0.18 1.41 6.27 -83.73 -0.53 0.88 16 6 C -0.13 -1.28 8.60 -39.64 -0.34 -1.63 16 7 C -0.05 -0.51 8.60 -39.32 -0.34 -0.85 16 8 C -0.18 -1.98 5.86 -105.05 -0.62 -2.60 16 9 C 0.40 5.52 6.41 -30.83 -0.20 5.33 16 10 O -0.43 -7.03 16.55 -13.62 -0.23 -7.25 16 11 C 0.04 0.58 2.16 -27.88 -0.06 0.52 16 12 H 0.11 1.57 6.34 -51.93 -0.33 1.24 16 13 C -0.16 -2.00 9.32 37.16 0.35 -1.65 16 14 O -0.34 -6.18 9.46 -45.77 -0.43 -6.61 16 15 C 0.46 9.27 7.93 36.01 0.29 9.55 16 16 O -0.50 -11.33 15.20 -18.75 -0.29 -11.62 16 17 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 18 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 19 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 23 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.04 -0.33 9.56 -39.32 -0.38 -0.71 16 28 C -0.16 -1.16 9.92 -39.64 -0.39 -1.55 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.10 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 32 H 0.41 0.52 8.81 -40.82 -0.36 0.16 16 33 H 0.14 1.41 6.41 -52.48 -0.34 1.08 16 34 H 0.14 1.25 5.91 -52.49 -0.31 0.94 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.76 6.61 -51.93 -0.34 0.42 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.14 1.24 7.64 -52.48 -0.40 0.84 16 44 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -37.39 381.65 -7.91 -45.29 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.84 Total: -1.98 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.62 Total: -4.79 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.68 Total: -29.85 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.86 Total: -31.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.39 -7.91 -45.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.418 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds