Wall clock time and date at job start Tue Mar 31 2020 18:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21277 * 119.99574 * 2 1 4 4 N 1.34774 * 120.00106 * 180.02562 * 2 1 3 5 5 C 1.39321 * 119.99752 * 185.27759 * 4 2 1 6 6 C 1.39208 * 119.89987 * 33.58950 * 5 4 2 7 7 C 1.37086 * 120.10077 * 180.27373 * 6 5 4 8 8 C 1.40057 * 119.89801 * 359.52608 * 7 6 5 9 9 C 1.46846 * 120.10199 * 180.22646 * 8 7 6 10 10 O 1.21290 * 119.99816 * 180.24808 * 9 8 7 11 11 C 1.50705 * 119.99708 * 0.24644 * 9 8 7 12 12 H 1.08997 * 109.46894 * 45.00371 * 11 9 8 13 13 C 1.52997 * 109.47294 * 285.00013 * 11 9 8 14 14 O 1.45198 * 109.46678 * 164.99936 * 11 9 8 15 15 C 1.34229 * 117.00114 * 210.00055 * 14 11 9 16 16 O 1.20826 * 119.99681 * 0.02562 * 15 14 11 17 17 C 1.50707 * 120.00309 * 180.02562 * 15 14 11 18 18 C 1.52999 * 109.46932 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46730 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00205 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47390 * 59.99406 * 23 21 19 25 25 H 1.48491 * 109.47317 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46756 * 299.99712 * 23 21 19 27 27 C 1.40056 * 119.79488 * 0.47436 * 8 7 6 28 28 C 1.37080 * 119.90224 * 359.75241 * 27 8 7 29 29 H 1.09000 * 109.46687 * 239.99645 * 1 2 3 30 30 H 1.08993 * 109.47266 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47067 * 120.00074 * 1 2 3 32 32 H 0.96996 * 120.00297 * 5.27253 * 4 2 1 33 33 H 1.08008 * 119.95350 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.04986 * 179.72028 * 7 6 5 35 35 H 1.09004 * 109.47047 * 299.99975 * 13 11 9 36 36 H 1.09001 * 109.47056 * 59.99994 * 13 11 9 37 37 H 1.09001 * 109.46788 * 179.97438 * 13 11 9 38 38 H 1.08994 * 109.46969 * 300.00046 * 17 15 14 39 39 H 1.09005 * 109.46563 * 60.00208 * 17 15 14 40 40 H 1.09002 * 109.47372 * 300.00081 * 18 17 15 41 41 H 1.08997 * 109.47243 * 60.00363 * 18 17 15 42 42 H 0.96998 * 120.00224 * 180.02562 * 22 21 19 43 43 H 1.08007 * 120.04851 * 179.77616 * 27 8 7 44 44 H 1.08004 * 119.95225 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5698 -1.1697 0.1105 6 6 4.2064 -0.1977 0.8772 7 6 5.5730 -0.1930 0.9847 8 6 6.3282 -1.1739 0.3297 9 6 7.7921 -1.1760 0.4458 10 8 8.4446 -2.0237 -0.1259 11 6 8.4836 -0.1249 1.2753 12 1 7.9595 -0.0077 2.2238 13 6 8.4768 1.2062 0.5209 14 8 9.8546 -0.5316 1.5270 15 6 10.4139 -0.1127 2.6730 16 8 9.7788 0.5708 3.4407 17 6 11.8340 -0.4949 3.0023 18 6 12.2236 0.1063 4.3542 19 6 13.6439 -0.2754 4.6831 20 1 14.2117 -0.8861 3.9967 21 6 14.2181 0.1541 5.8607 22 7 13.5265 0.8973 6.6968 23 14 15.9788 -0.3184 6.2681 24 1 16.8873 0.2022 5.2152 25 1 16.3569 0.2650 7.5803 26 1 16.0920 -1.7977 6.3325 27 6 5.6833 -2.1497 -0.4406 28 6 4.3166 -2.1439 -0.5462 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6991 -2.0054 -0.0781 33 1 3.6230 0.5562 1.3850 34 1 6.0664 0.5642 1.5761 35 1 9.0010 1.0889 -0.4276 36 1 7.4476 1.5114 0.3319 37 1 8.9766 1.9665 1.1211 38 1 11.9161 -1.5807 3.0507 39 1 12.5013 -0.1141 2.2290 40 1 12.1413 1.1922 4.3062 41 1 11.5563 -0.2748 5.1272 42 1 13.9305 1.1998 7.5251 43 1 6.2619 -2.9060 -0.9504 44 1 3.8184 -2.8958 -1.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:35 Heat of formation + Delta-G solvation = -162.983625 kcal Electronic energy + Delta-G solvation = -27077.880081 eV Core-core repulsion = 22959.377574 eV Total energy + Delta-G solvation = -4118.502507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05871 -41.60505 -40.63073 -39.09352 -37.68105 -36.01248 -35.66353 -33.84993 -33.01448 -32.15324 -31.65992 -29.76210 -28.12828 -26.43166 -24.84425 -24.05100 -23.63723 -21.76259 -21.41540 -20.97215 -19.34861 -18.96822 -18.29633 -18.16044 -17.88789 -17.42964 -17.26722 -16.61353 -16.48821 -16.10206 -15.86918 -15.66685 -15.31422 -14.97587 -14.84833 -14.63870 -14.29673 -14.22236 -14.07220 -13.96702 -13.68094 -13.46387 -13.30927 -13.26583 -13.03679 -12.82299 -12.73505 -12.55077 -12.38644 -12.04445 -11.95985 -11.76756 -11.58024 -11.51776 -11.32360 -11.07965 -10.78659 -10.57111 -10.15808 -9.32093 -8.20199 -6.34036 -0.60798 0.30575 1.00585 1.15741 1.40801 1.46364 1.47390 1.55488 1.58785 2.00252 2.42601 2.68017 2.76190 3.13361 3.56150 3.68089 3.77476 3.79976 3.84260 3.85809 3.96291 4.17442 4.30982 4.37271 4.40985 4.41383 4.53269 4.54715 4.58060 4.66416 4.86935 4.89404 4.96257 5.00289 5.09022 5.15902 5.21147 5.28245 5.32329 5.45703 5.53901 5.79538 5.79612 6.12486 6.24259 6.33823 6.71348 6.83750 7.04283 7.35962 8.92135 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.001857 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.559736 B =15075.628668 C =15628.898704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.571 6.571 4 N -0.661 5.661 5 C 0.183 3.817 6 C -0.149 4.149 7 C -0.053 4.053 8 C -0.199 4.199 9 C 0.410 3.590 10 O -0.462 6.462 11 C 0.028 3.972 12 H 0.111 0.889 13 C -0.159 4.159 14 O -0.344 6.344 15 C 0.466 3.534 16 O -0.533 6.533 17 C -0.095 4.095 18 C 0.040 3.960 19 C -0.547 4.547 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.264 1.264 27 C -0.037 4.037 28 C -0.148 4.148 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.435 0.565 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.116 0.884 40 H -0.007 1.007 41 H -0.008 1.008 42 H 0.264 0.736 43 H 0.145 0.855 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.229 -7.192 -18.502 36.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.449 6.449 4 N -0.308 5.308 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.071 4.071 8 C -0.201 4.201 9 C 0.289 3.711 10 O -0.338 6.338 11 C -0.028 4.028 12 H 0.129 0.871 13 C -0.216 4.216 14 O -0.261 6.261 15 C 0.311 3.689 16 O -0.422 6.422 17 C -0.132 4.132 18 C 0.003 3.997 19 C -0.585 4.585 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.188 1.188 27 C -0.056 4.056 28 C -0.168 4.168 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.276 0.724 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.073 0.927 43 H 0.163 0.837 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -29.789 -6.586 -18.429 35.643 hybrid contribution 0.665 0.018 0.822 1.057 sum -29.125 -6.568 -17.607 34.661 Atomic orbital electron populations 1.21980 0.86563 1.06658 1.07126 1.21987 0.92798 0.82290 0.73368 1.90774 1.71893 1.33041 1.49157 1.43585 1.04110 1.11309 1.71809 1.18189 0.84438 0.95454 0.93273 1.21017 0.94517 1.00865 1.00534 1.21361 0.93791 0.96148 0.95832 1.20096 0.92243 1.01222 1.06491 1.22293 0.89119 0.82220 0.77511 1.90533 1.68612 1.35316 1.39331 1.23273 0.81316 0.96710 1.01452 0.87087 1.22143 1.05402 0.93088 1.00968 1.86678 1.28943 1.70367 1.40134 1.24592 0.90818 0.75798 0.77728 1.90608 1.64443 1.37195 1.50003 1.21549 0.86881 1.04158 1.00662 1.18794 0.95627 0.94903 0.90374 1.21606 0.98511 1.33060 1.05309 0.90632 1.26080 1.03150 0.94745 0.96061 1.70146 1.39259 1.36666 1.11304 0.85363 0.78475 0.78946 0.77411 1.18791 1.21143 1.18836 1.21234 0.94744 0.95735 0.93896 1.21020 0.92908 1.01335 1.01524 0.86450 0.89092 0.86198 0.72437 0.84912 0.84150 0.90517 0.87580 0.91253 0.86955 0.86634 0.98813 0.98979 0.92700 0.83748 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.16 10.32 71.24 0.74 0.57 16 2 C 0.50 5.43 7.66 87.66 0.67 6.11 16 3 O -0.57 -12.36 14.76 -3.02 -0.04 -12.41 16 4 N -0.66 -4.80 5.31 -303.46 -1.61 -6.41 16 5 C 0.18 2.54 6.27 38.42 0.24 2.78 16 6 C -0.15 -2.80 8.60 22.23 0.19 -2.61 16 7 C -0.05 -1.05 8.60 22.44 0.19 -0.86 16 8 C -0.20 -4.33 5.86 -20.14 -0.12 -4.45 16 9 C 0.41 11.39 6.41 27.94 0.18 11.57 16 10 O -0.46 -15.33 16.55 15.27 0.25 -15.08 16 11 C 0.03 0.84 2.16 29.85 0.06 0.90 16 12 H 0.11 3.29 6.34 -2.39 -0.02 3.27 16 13 C -0.16 -3.88 9.32 71.98 0.67 -3.21 16 14 O -0.34 -12.56 9.46 -45.18 -0.43 -12.98 16 15 C 0.47 19.35 7.93 71.24 0.56 19.91 16 16 O -0.53 -25.00 15.20 21.97 0.33 -24.66 16 17 C -0.10 -4.06 5.75 29.85 0.17 -3.89 16 18 C 0.04 2.23 4.26 29.85 0.13 2.35 16 19 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 20 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 21 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 22 N -0.93 -58.51 13.29 21.45 0.28 -58.22 16 23 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 27 C -0.04 -0.65 9.56 22.44 0.21 -0.43 16 28 C -0.15 -1.73 9.92 22.23 0.22 -1.51 16 29 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.09 0.30 8.12 -2.39 -0.02 0.28 16 31 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.43 -0.58 8.81 -92.71 -0.82 -1.39 16 33 H 0.13 2.73 6.41 -2.91 -0.02 2.71 16 34 H 0.14 2.62 5.91 -2.91 -0.02 2.60 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 1.99 6.61 -2.39 -0.02 1.98 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 39 H 0.12 4.43 8.14 -2.38 -0.02 4.41 16 40 H -0.01 -0.40 8.10 -2.39 -0.02 -0.42 16 41 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 43 H 0.14 2.36 7.64 -2.91 -0.02 2.34 16 44 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -84.48 381.65 5.86 -78.62 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.22 Total: 8.15 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.82 Total: -3.40 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -1.33 Total: -64.63 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: 0.11 Total: -65.14 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -84.48 5.86 -78.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.365 kcal (2) G-P(sol) polarization free energy of solvation -84.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds