Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21297 * 120.00304 * 2 1 4 4 C 1.46847 * 120.00228 * 180.02562 * 2 1 3 5 5 C 1.40057 * 120.10448 * 179.97438 * 4 2 1 6 6 C 1.37075 * 119.90214 * 179.97438 * 5 4 2 7 7 C 1.39220 * 120.10105 * 0.02562 * 6 5 4 8 8 N 1.39315 * 119.89684 * 179.97438 * 7 6 5 9 9 C 1.34769 * 120.00413 * 326.40878 * 8 7 6 10 10 O 1.21273 * 120.00182 * 354.71445 * 9 8 7 11 11 C 1.50698 * 120.00108 * 174.72047 * 9 8 7 12 12 H 1.09005 * 109.47398 * 55.00082 * 11 9 8 13 13 C 1.52999 * 109.46997 * 294.99664 * 11 9 8 14 14 O 1.45201 * 109.47370 * 174.99691 * 11 9 8 15 15 C 1.34226 * 117.00344 * 209.99648 * 14 11 9 16 16 O 1.20830 * 120.00066 * 0.02562 * 15 14 11 17 17 C 1.50700 * 120.00313 * 179.97438 * 15 14 11 18 18 C 1.53001 * 109.47210 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46903 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00278 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99930 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99732 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46959 * 59.99901 * 23 21 19 25 25 H 1.48501 * 109.47195 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47230 * 300.00128 * 23 21 19 27 27 C 1.39214 * 120.19809 * 0.25481 * 7 6 5 28 28 C 1.37081 * 120.10406 * 359.48520 * 27 7 6 29 29 H 1.08994 * 109.47092 * 270.00010 * 1 2 3 30 30 H 1.09002 * 109.47081 * 29.99959 * 1 2 3 31 31 H 1.08996 * 109.46883 * 149.99874 * 1 2 3 32 32 H 1.08006 * 120.04450 * 359.96261 * 5 4 2 33 33 H 1.08002 * 119.95475 * 179.97438 * 6 5 4 34 34 H 0.97007 * 119.99508 * 146.41089 * 8 7 6 35 35 H 1.08995 * 109.47351 * 299.99835 * 13 11 9 36 36 H 1.08999 * 109.46996 * 60.00242 * 13 11 9 37 37 H 1.09004 * 109.47198 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47095 * 300.00784 * 17 15 14 39 39 H 1.08999 * 109.46971 * 60.00098 * 17 15 14 40 40 H 1.09000 * 109.47161 * 299.99921 * 18 17 15 41 41 H 1.09002 * 109.47096 * 60.00571 * 18 17 15 42 42 H 0.97005 * 119.99960 * 179.97438 * 22 21 19 43 43 H 1.08004 * 119.94634 * 179.74175 * 27 7 6 44 44 H 1.07996 * 120.05327 * 180.25624 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2717 -0.0006 5 6 3.6418 -1.2742 -0.0011 6 6 4.3231 -2.4637 -0.0011 7 6 3.6249 -3.6682 -0.0011 8 7 4.3215 -4.8746 -0.0016 9 6 5.5002 -4.9719 -0.6478 10 8 5.9084 -4.0403 -1.3082 11 6 6.3109 -6.2385 -0.5499 12 1 5.6979 -7.0868 -0.8546 13 6 6.7745 -6.4368 0.8946 14 8 7.4688 -6.1407 -1.4206 15 6 7.9368 -7.2851 -1.9431 16 8 7.3967 -8.3339 -1.6818 17 6 9.1353 -7.2618 -2.8563 18 6 9.4590 -8.6868 -3.3095 19 6 10.6579 -8.6635 -4.2223 20 1 11.1405 -7.7260 -4.4562 21 6 11.1382 -9.8389 -4.7597 22 7 10.5502 -10.9804 -4.4753 23 14 12.6238 -9.8100 -5.8916 24 1 13.7891 -9.2455 -5.1646 25 1 12.9381 -11.1932 -6.3314 26 1 12.3257 -8.9685 -7.0783 27 6 2.2328 -3.6706 -0.0065 28 6 1.5431 -2.4859 -0.0011 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.1843 -0.3402 -0.0017 33 1 5.4031 -2.4666 -0.0019 34 1 3.9582 -5.6447 0.4631 35 1 7.3875 -5.5887 1.1993 36 1 5.9053 -6.5104 1.5483 37 1 7.3605 -7.3532 0.9656 38 1 8.9162 -6.6447 -3.7277 39 1 9.9905 -6.8466 -2.3230 40 1 9.6781 -9.3042 -2.4383 41 1 8.6038 -9.1015 -3.8430 42 1 10.8879 -11.8074 -4.8536 43 1 1.6952 -4.6074 -0.0107 44 1 0.4632 -2.4887 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = -139.029133 kcal Electronic energy + Delta-G solvation = -26870.961720 eV Core-core repulsion = 22753.497957 eV Total energy + Delta-G solvation = -4117.463762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27930 -40.32976 -39.71867 -38.28670 -36.33259 -35.28656 -33.64444 -32.60981 -31.91489 -31.17236 -30.85872 -29.09295 -26.27427 -25.37549 -23.87215 -23.18401 -22.25325 -20.82875 -20.21152 -19.92178 -18.56825 -17.80289 -17.38594 -16.93666 -16.35197 -16.25617 -15.96924 -15.50025 -15.41292 -15.27579 -14.76402 -14.49748 -14.40113 -14.16090 -13.98289 -13.66123 -13.24863 -13.21795 -13.07448 -12.73076 -12.63265 -12.54637 -12.38664 -12.24144 -11.80424 -11.64620 -11.26694 -10.96348 -10.82973 -10.80784 -10.68103 -10.25511 -10.09076 -10.07886 -9.98389 -9.62076 -9.47761 -9.22750 -8.63774 -8.40062 -6.04281 -4.09173 0.16498 0.97008 1.81378 2.10843 2.27278 2.66843 3.14256 3.32015 3.36529 3.38832 3.39139 3.67734 4.07047 4.29961 4.42348 4.44501 4.57595 4.60594 4.71806 4.82985 4.87141 4.94417 5.02806 5.05223 5.08450 5.31359 5.38959 5.41622 5.49229 5.55583 5.67314 5.79290 5.79636 5.91502 6.04748 6.07348 6.14898 6.45475 6.49732 6.78027 6.81549 7.14293 7.59957 7.62202 7.68145 7.94137 8.13188 8.32626 8.97353 9.55096 11.06620 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.001742 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.382252 B =16065.264134 C =16541.481510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.462 6.462 4 C -0.197 4.197 5 C -0.036 4.036 6 C -0.137 4.137 7 C 0.189 3.811 8 N -0.673 5.673 9 C 0.519 3.481 10 O -0.486 6.486 11 C 0.068 3.932 12 H 0.113 0.887 13 C -0.164 4.164 14 O -0.337 6.337 15 C 0.459 3.541 16 O -0.503 6.503 17 C -0.102 4.102 18 C 0.034 3.966 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.161 4.161 28 C -0.050 4.050 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.416 0.584 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.134 0.866 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 16.009 14.680 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.339 6.339 4 C -0.198 4.198 5 C -0.055 4.055 6 C -0.157 4.157 7 C 0.093 3.907 8 N -0.320 5.320 9 C 0.305 3.695 10 O -0.356 6.356 11 C 0.009 3.991 12 H 0.130 0.870 13 C -0.222 4.222 14 O -0.254 6.254 15 C 0.303 3.697 16 O -0.389 6.389 17 C -0.140 4.140 18 C -0.003 4.003 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.724 3.276 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.182 4.182 28 C -0.069 4.069 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.152 0.848 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.353 16.660 14.238 30.598 hybrid contribution 0.426 -0.791 -0.353 0.965 sum -20.927 15.869 13.885 29.708 Atomic orbital electron populations 1.22239 0.93833 1.04967 1.04739 1.22394 0.91632 0.87599 0.70856 1.90560 1.72141 1.34384 1.36779 1.20500 0.94567 0.94822 1.09943 1.21194 0.92984 0.98465 0.92864 1.21080 1.01584 0.90586 1.02476 1.18018 0.91029 0.85719 0.95931 1.43407 1.21702 1.12842 1.54010 1.20582 0.80630 0.89747 0.78508 1.90782 1.68515 1.39282 1.37068 1.22224 0.88493 0.95972 0.92426 0.86957 1.22156 1.03101 1.04597 0.92345 1.86751 1.42563 1.37466 1.58603 1.25009 0.85558 0.80753 0.78372 1.90628 1.58190 1.31958 1.58165 1.21819 0.90821 1.05053 0.96265 1.19031 0.97136 0.87200 0.96967 1.21116 1.13312 0.93452 1.28924 0.92286 1.25010 0.97191 0.95476 0.96573 1.69978 1.40610 0.98012 1.44206 0.86589 0.82899 0.77049 0.81053 1.20140 1.21247 1.20141 1.20766 0.91885 0.99326 1.06214 1.21122 1.00038 0.90794 0.94949 0.88452 0.89411 0.89496 0.84503 0.83993 0.74745 0.90749 0.90471 0.89865 0.88650 0.88663 0.95525 0.95560 0.92783 0.84766 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.83 9.75 36.01 0.35 -0.48 16 2 C 0.40 3.27 7.22 -30.83 -0.22 3.05 16 3 O -0.46 -5.55 17.08 5.54 0.09 -5.46 16 4 C -0.20 -1.62 5.87 -105.05 -0.62 -2.24 16 5 C -0.04 -0.35 9.56 -39.32 -0.38 -0.73 16 6 C -0.14 -1.42 8.60 -39.64 -0.34 -1.76 16 7 C 0.19 1.65 6.27 -83.73 -0.53 1.13 16 8 N -0.67 -5.38 5.27 -9.85 -0.05 -5.43 16 9 C 0.52 6.14 6.91 -10.99 -0.08 6.06 16 10 O -0.49 -7.65 14.19 -14.05 -0.20 -7.85 16 11 C 0.07 0.83 2.98 -27.88 -0.08 0.75 16 12 H 0.11 1.32 7.16 -51.93 -0.37 0.95 16 13 C -0.16 -1.55 9.50 37.16 0.35 -1.19 16 14 O -0.34 -5.55 9.42 -45.88 -0.43 -5.98 16 15 C 0.46 8.72 7.93 36.01 0.29 9.00 16 16 O -0.50 -10.59 15.20 -18.75 -0.29 -10.88 16 17 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 18 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 19 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 20 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.16 -1.03 9.92 -39.64 -0.39 -1.42 16 28 C -0.05 -0.30 9.33 -39.32 -0.37 -0.66 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.19 6.45 -51.93 -0.34 -0.15 16 32 H 0.14 1.34 7.64 -52.48 -0.40 0.94 16 33 H 0.14 1.65 6.41 -52.49 -0.34 1.32 16 34 H 0.42 1.82 8.78 -40.82 -0.36 1.46 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.14 0.37 6.34 -52.49 -0.33 0.03 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -36.48 383.78 -7.97 -44.45 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.90 Total: -1.66 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.70 Total: -3.37 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.68 Total: -31.36 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.82 Total: -30.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.48 -7.97 -44.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.580 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds