Wall clock time and date at job start Tue Mar 31 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99754 * 2 1 4 4 H 1.08998 * 109.47254 * 0.27924 * 3 2 1 5 5 O 1.42894 * 109.47362 * 240.27546 * 3 2 1 6 6 C 1.50701 * 109.46726 * 120.27343 * 3 2 1 7 7 O 1.20829 * 119.99887 * 115.00355 * 6 3 2 8 8 O 1.34231 * 120.00254 * 294.99970 * 6 3 2 9 9 C 1.45197 * 116.99797 * 179.97438 * 8 6 3 10 10 H 1.09002 * 109.47734 * 30.00622 * 9 8 6 11 11 C 1.52999 * 109.47287 * 270.00239 * 9 8 6 12 12 C 1.50703 * 109.47088 * 150.00233 * 9 8 6 13 13 O 1.21294 * 119.99845 * 13.70900 * 12 9 8 14 14 N 1.34772 * 120.00485 * 193.71124 * 12 9 8 15 15 C 1.46508 * 119.99852 * 6.16841 * 14 12 9 16 16 C 1.50697 * 109.46616 * 95.32484 * 15 14 12 17 17 H 1.07993 * 120.00523 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99786 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99686 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46719 * 90.00155 * 20 18 16 22 22 H 1.48508 * 109.46851 * 209.99690 * 20 18 16 23 23 H 1.48491 * 109.47386 * 330.00286 * 20 18 16 24 24 C 1.39925 * 120.00386 * 186.17110 * 14 12 9 25 25 C 1.38868 * 120.06908 * 187.40799 * 24 14 12 26 26 C 1.38119 * 119.92388 * 179.76463 * 25 24 14 27 27 C 1.38280 * 120.07226 * 0.49610 * 26 25 24 28 28 C 1.38281 * 120.13882 * 359.75646 * 27 26 25 29 29 C 1.38110 * 120.07522 * 0.02562 * 28 27 26 30 30 H 1.07999 * 119.99531 * 179.71844 * 1 2 3 31 31 H 1.07994 * 120.00114 * 359.72558 * 1 2 3 32 32 H 1.07993 * 119.99640 * 180.27708 * 2 1 3 33 33 H 0.96698 * 113.99988 * 300.00074 * 5 3 2 34 34 H 1.09003 * 109.47113 * 177.30236 * 11 9 8 35 35 H 1.08996 * 109.47246 * 297.29496 * 11 9 8 36 36 H 1.08996 * 109.47014 * 57.30076 * 11 9 8 37 37 H 1.09000 * 109.47088 * 215.32622 * 15 14 12 38 38 H 1.09000 * 109.46901 * 335.32665 * 15 14 12 39 39 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.03899 * 359.97438 * 25 24 14 41 41 H 1.07998 * 119.96651 * 180.25392 * 26 25 24 42 42 H 1.08000 * 119.92861 * 179.74512 * 27 26 25 43 43 H 1.08006 * 119.96130 * 179.97438 * 28 27 26 44 44 H 1.07994 * 120.04032 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 8 2.8801 1.3837 -1.1699 6 6 2.9349 1.3820 1.2271 7 8 4.1377 1.4016 1.1136 8 8 2.3750 1.4287 2.4461 9 6 3.2755 1.5012 3.5828 10 1 4.1883 2.0205 3.2907 11 6 3.6212 0.0862 4.0507 12 6 2.6077 2.2525 4.7056 13 8 1.4145 2.4670 4.6664 14 7 3.3362 2.6861 5.7533 15 6 4.7946 2.5476 5.7389 16 6 5.4159 3.8291 5.2464 17 1 4.7875 4.6634 4.9721 18 6 6.7869 3.9365 5.1460 19 7 7.5522 2.9204 5.4796 20 14 7.5571 5.5249 4.5349 21 1 7.8200 6.4231 5.6879 22 1 8.8353 5.2208 3.8427 23 1 6.6283 6.1932 3.5885 24 6 2.6996 3.2685 6.8550 25 6 3.4526 3.8538 7.8643 26 6 2.8210 4.4322 8.9480 27 6 1.4409 4.4196 9.0335 28 6 0.6886 3.8329 8.0325 29 6 1.3138 3.2569 6.9441 30 1 -0.5399 -0.9353 -0.0046 31 1 -0.5400 0.9352 0.0045 32 1 1.8499 -0.9353 -0.0045 33 1 3.5353 0.6760 -1.2405 34 1 4.3346 0.1396 4.8732 35 1 2.7149 -0.4166 4.3881 36 1 4.0606 -0.4725 3.2244 37 1 5.1495 2.3358 6.7475 38 1 5.0753 1.7294 5.0757 39 1 8.5167 2.9961 5.4094 40 1 4.5307 3.8599 7.8004 41 1 3.4058 4.8912 9.7314 42 1 0.9496 4.8689 9.8839 43 1 -0.3892 3.8244 8.1024 44 1 0.7257 2.7985 6.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814546538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:01 Heat of formation + Delta-G solvation = -100.866518 kcal Electronic energy + Delta-G solvation = -29163.080084 eV Core-core repulsion = 25047.271177 eV Total energy + Delta-G solvation = -4115.808907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90953 -40.09898 -38.10985 -37.36508 -36.09288 -35.42624 -33.65556 -32.77082 -31.99101 -30.35339 -29.19567 -27.64389 -27.41671 -24.66021 -23.39793 -22.55389 -21.66278 -21.05131 -20.56586 -19.23807 -18.37996 -17.35830 -16.96596 -16.71558 -16.48550 -16.28535 -15.90446 -15.48939 -15.06742 -14.66199 -14.55134 -14.29985 -13.74011 -13.56616 -13.26585 -13.20127 -12.86433 -12.82999 -12.76044 -12.41372 -12.27868 -12.08449 -11.99239 -11.67203 -11.41939 -11.21608 -11.17661 -11.06019 -10.84452 -10.64270 -10.54326 -10.32368 -10.27526 -10.12547 -9.75614 -9.27168 -8.84947 -8.66004 -8.37652 -7.28509 -6.31628 -4.40670 1.76898 1.78403 1.96623 2.18923 2.42683 3.03080 3.19006 3.26451 3.31186 3.57198 4.13943 4.24542 4.39544 4.44028 4.67402 4.70816 4.73627 5.02566 5.12505 5.21588 5.34452 5.42502 5.49148 5.52939 5.66744 5.78328 5.80175 6.01592 6.07707 6.09249 6.17049 6.18349 6.29271 6.47101 6.50728 6.68141 6.83822 6.94193 6.99814 7.08219 7.16754 7.22268 7.60802 7.69510 7.76361 7.81595 7.96533 8.50285 8.68879 9.28385 10.74885 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004608 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.559664 B = 6075.552430 C = 8399.180837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.198 4.198 3 C 0.155 3.845 4 H 0.140 0.860 5 O -0.527 6.527 6 C 0.431 3.569 7 O -0.490 6.490 8 O -0.326 6.326 9 C 0.072 3.928 10 H 0.128 0.872 11 C -0.163 4.163 12 C 0.523 3.477 13 O -0.523 6.523 14 N -0.529 5.529 15 C 0.219 3.781 16 C -0.547 4.547 17 H 0.064 0.936 18 C 0.071 3.929 19 N -0.886 5.886 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.169 3.831 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.159 4.159 28 C -0.109 4.109 29 C -0.173 4.173 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.387 0.613 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.268 0.732 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -6.288 -3.864 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.216 4.216 3 C 0.094 3.906 4 H 0.158 0.842 5 O -0.333 6.333 6 C 0.272 3.728 7 O -0.377 6.377 8 O -0.242 6.242 9 C 0.014 3.986 10 H 0.146 0.854 11 C -0.220 4.220 12 C 0.312 3.688 13 O -0.402 6.402 14 N -0.249 5.249 15 C 0.101 3.899 16 C -0.585 4.585 17 H 0.082 0.918 18 C -0.133 4.133 19 N -0.523 5.523 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.074 3.926 25 C -0.159 4.159 26 C -0.124 4.124 27 C -0.178 4.178 28 C -0.128 4.128 29 C -0.193 4.193 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.124 -5.761 -4.072 13.172 hybrid contribution 1.281 0.458 0.003 1.361 sum -9.842 -5.303 -4.069 11.897 Atomic orbital electron populations 1.23980 0.95403 1.02871 0.95557 1.23163 0.96933 0.97321 1.04197 1.20512 0.90372 0.98812 0.80922 0.84246 1.86685 1.51965 1.55630 1.39003 1.24713 0.89093 0.73077 0.85932 1.90738 1.15782 1.44455 1.86690 1.86541 1.40633 1.82801 1.14219 1.22560 0.93787 0.98694 0.83558 0.85417 1.22179 1.02904 0.93568 1.03359 1.20047 0.86583 0.79261 0.82903 1.90372 1.15242 1.57036 1.77513 1.45872 1.10564 1.53924 1.14564 1.19925 0.71182 0.98916 0.99886 1.21353 0.91858 0.99157 1.46099 0.91792 1.24898 0.96838 0.97005 0.94574 1.69895 1.05291 1.30392 1.46762 0.86453 0.78793 0.82958 0.79170 1.20250 1.20830 1.19657 1.17999 0.91718 0.95259 0.87607 1.21161 1.01292 0.99593 0.93901 1.20884 0.94398 0.99446 0.97685 1.20991 0.94156 1.03157 0.99506 1.20986 0.99173 0.98571 0.94037 1.22418 0.93675 1.02464 1.00738 0.87407 0.87647 0.86273 0.76397 0.88914 0.91353 0.90955 0.93371 0.92960 0.92198 0.84081 0.86401 0.87070 0.86708 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 14.32 29.01 0.42 -0.72 16 2 C -0.20 -1.86 9.09 -36.03 -0.33 -2.19 16 3 C 0.15 1.82 3.86 -29.03 -0.11 1.71 16 4 H 0.14 1.49 7.78 -51.93 -0.40 1.08 16 5 O -0.53 -6.26 12.98 -55.13 -0.72 -6.98 16 6 C 0.43 6.81 7.23 36.01 0.26 7.07 16 7 O -0.49 -9.12 15.54 -25.47 -0.40 -9.52 16 8 O -0.33 -5.65 9.44 -45.79 -0.43 -6.08 16 9 C 0.07 1.35 2.12 -27.88 -0.06 1.29 16 10 H 0.13 2.72 6.23 -51.93 -0.32 2.39 16 11 C -0.16 -2.56 9.23 37.16 0.34 -2.22 16 12 C 0.52 10.83 6.88 -10.99 -0.08 10.76 16 13 O -0.52 -11.27 13.08 -13.71 -0.18 -11.45 16 14 N -0.53 -11.28 2.69 -114.73 -0.31 -11.59 16 15 C 0.22 5.03 4.04 -5.19 -0.02 5.01 16 16 C -0.55 -14.01 8.77 -34.44 -0.30 -14.31 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 19 N -0.89 -23.66 13.29 55.43 0.74 -22.92 16 20 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.17 3.49 6.46 -83.69 -0.54 2.95 16 25 C -0.14 -2.72 9.02 -39.39 -0.36 -3.07 16 26 C -0.11 -1.75 10.04 -39.61 -0.40 -2.15 16 27 C -0.16 -2.45 10.04 -39.55 -0.40 -2.85 16 28 C -0.11 -1.78 10.04 -39.61 -0.40 -2.17 16 29 C -0.17 -3.31 8.97 -39.39 -0.35 -3.67 16 30 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.11 0.79 7.83 -52.49 -0.41 0.37 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.39 3.50 8.78 45.56 0.40 3.90 16 34 H 0.09 1.50 6.23 -51.93 -0.32 1.17 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.14 6.86 -51.93 -0.36 0.79 16 38 H 0.05 1.20 4.47 -51.93 -0.23 0.96 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.14 2.94 6.15 -52.49 -0.32 2.62 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.17 3.37 4.73 -55.11 -0.26 3.11 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -30.55 375.23 -7.82 -38.37 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.74 Total: 11.66 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.42 Total: -2.81 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.43 Total: -34.52 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.72 Total: -34.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.55 -7.82 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814546538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.494 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds