Wall clock time and date at job start Tue Mar 31 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99754 * 2 1 4 4 H 1.08998 * 109.47254 * 0.27924 * 3 2 1 5 5 O 1.42894 * 109.47362 * 240.27546 * 3 2 1 6 6 C 1.50701 * 109.46726 * 120.27343 * 3 2 1 7 7 O 1.20829 * 119.99887 * 115.00355 * 6 3 2 8 8 O 1.34231 * 120.00254 * 294.99970 * 6 3 2 9 9 C 1.45197 * 116.99797 * 179.97438 * 8 6 3 10 10 H 1.09002 * 109.47734 * 30.00622 * 9 8 6 11 11 C 1.52999 * 109.47287 * 270.00239 * 9 8 6 12 12 C 1.50703 * 109.47088 * 150.00233 * 9 8 6 13 13 O 1.21294 * 119.99845 * 13.70900 * 12 9 8 14 14 N 1.34772 * 120.00485 * 193.71124 * 12 9 8 15 15 C 1.46508 * 119.99852 * 6.16841 * 14 12 9 16 16 C 1.50697 * 109.46616 * 95.32484 * 15 14 12 17 17 H 1.07993 * 120.00523 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99786 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99686 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46719 * 90.00155 * 20 18 16 22 22 H 1.48508 * 109.46851 * 209.99690 * 20 18 16 23 23 H 1.48491 * 109.47386 * 330.00286 * 20 18 16 24 24 C 1.39925 * 120.00386 * 186.17110 * 14 12 9 25 25 C 1.38868 * 120.06908 * 187.40799 * 24 14 12 26 26 C 1.38119 * 119.92388 * 179.76463 * 25 24 14 27 27 C 1.38280 * 120.07226 * 0.49610 * 26 25 24 28 28 C 1.38281 * 120.13882 * 359.75646 * 27 26 25 29 29 C 1.38110 * 120.07522 * 0.02562 * 28 27 26 30 30 H 1.07999 * 119.99531 * 179.71844 * 1 2 3 31 31 H 1.07994 * 120.00114 * 359.72558 * 1 2 3 32 32 H 1.07993 * 119.99640 * 180.27708 * 2 1 3 33 33 H 0.96698 * 113.99988 * 300.00074 * 5 3 2 34 34 H 1.09003 * 109.47113 * 177.30236 * 11 9 8 35 35 H 1.08996 * 109.47246 * 297.29496 * 11 9 8 36 36 H 1.08996 * 109.47014 * 57.30076 * 11 9 8 37 37 H 1.09000 * 109.47088 * 215.32622 * 15 14 12 38 38 H 1.09000 * 109.46901 * 335.32665 * 15 14 12 39 39 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.03899 * 359.97438 * 25 24 14 41 41 H 1.07998 * 119.96651 * 180.25392 * 26 25 24 42 42 H 1.08000 * 119.92861 * 179.74512 * 27 26 25 43 43 H 1.08006 * 119.96130 * 179.97438 * 28 27 26 44 44 H 1.07994 * 120.04032 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 8 2.8801 1.3837 -1.1699 6 6 2.9349 1.3820 1.2271 7 8 4.1377 1.4016 1.1136 8 8 2.3750 1.4287 2.4461 9 6 3.2755 1.5012 3.5828 10 1 4.1883 2.0205 3.2907 11 6 3.6212 0.0862 4.0507 12 6 2.6077 2.2525 4.7056 13 8 1.4145 2.4670 4.6664 14 7 3.3362 2.6861 5.7533 15 6 4.7946 2.5476 5.7389 16 6 5.4159 3.8291 5.2464 17 1 4.7875 4.6634 4.9721 18 6 6.7869 3.9365 5.1460 19 7 7.5522 2.9204 5.4796 20 14 7.5571 5.5249 4.5349 21 1 7.8200 6.4231 5.6879 22 1 8.8353 5.2208 3.8427 23 1 6.6283 6.1932 3.5885 24 6 2.6996 3.2685 6.8550 25 6 3.4526 3.8538 7.8643 26 6 2.8210 4.4322 8.9480 27 6 1.4409 4.4196 9.0335 28 6 0.6886 3.8329 8.0325 29 6 1.3138 3.2569 6.9441 30 1 -0.5399 -0.9353 -0.0046 31 1 -0.5400 0.9352 0.0045 32 1 1.8499 -0.9353 -0.0045 33 1 3.5353 0.6760 -1.2405 34 1 4.3346 0.1396 4.8732 35 1 2.7149 -0.4166 4.3881 36 1 4.0606 -0.4725 3.2244 37 1 5.1495 2.3358 6.7475 38 1 5.0753 1.7294 5.0757 39 1 8.5167 2.9961 5.4094 40 1 4.5307 3.8599 7.8004 41 1 3.4058 4.8912 9.7314 42 1 0.9496 4.8689 9.8839 43 1 -0.3892 3.8244 8.1024 44 1 0.7257 2.7985 6.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814546538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:00 Heat of formation + Delta-G solvation = -118.158493 kcal Electronic energy + Delta-G solvation = -29163.829920 eV Core-core repulsion = 25047.271177 eV Total energy + Delta-G solvation = -4116.558743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34023 -41.53068 -39.45119 -38.52417 -37.39320 -37.10373 -34.72147 -34.45413 -33.35654 -31.75935 -30.68260 -29.23885 -28.63384 -26.10413 -25.21305 -23.93007 -23.01310 -22.29168 -21.45529 -20.75612 -19.63551 -18.94354 -18.48603 -18.24956 -17.94138 -17.50246 -17.26572 -16.85569 -16.48989 -16.30395 -15.85524 -15.65060 -15.10887 -14.88115 -14.80780 -14.45084 -14.26864 -14.14488 -14.03131 -13.74242 -13.63850 -13.50008 -13.30758 -13.12036 -12.96583 -12.84102 -12.64941 -12.47888 -12.28763 -12.14709 -12.07559 -11.98846 -11.84245 -11.24872 -10.98705 -10.71704 -10.56015 -10.35693 -9.76835 -8.84309 -8.31046 -6.47296 0.34468 0.57249 0.83272 0.97386 1.29162 1.33801 1.36459 1.44551 1.50419 2.07935 2.33205 2.98362 3.03006 3.15165 3.25583 3.40216 3.67635 3.72984 3.83372 3.91573 4.11681 4.19911 4.38651 4.45649 4.48465 4.48914 4.51387 4.63991 4.65961 4.81496 4.94100 4.94804 5.03490 5.16051 5.24464 5.42205 5.54682 5.56816 5.60830 5.62206 5.68136 5.75837 5.85653 6.25110 6.29134 6.30944 6.52922 6.61726 6.92248 7.24123 8.73091 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004608 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.559664 B = 6075.552430 C = 8399.180837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.215 4.215 3 C 0.163 3.837 4 H 0.151 0.849 5 O -0.537 6.537 6 C 0.429 3.571 7 O -0.525 6.525 8 O -0.329 6.329 9 C 0.075 3.925 10 H 0.097 0.903 11 C -0.154 4.154 12 C 0.518 3.482 13 O -0.535 6.535 14 N -0.533 5.533 15 C 0.236 3.764 16 C -0.554 4.554 17 H 0.045 0.955 18 C 0.032 3.968 19 N -0.909 5.909 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.279 1.279 24 C 0.136 3.864 25 C -0.160 4.160 26 C -0.103 4.103 27 C -0.145 4.145 28 C -0.104 4.104 29 C -0.188 4.188 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.051 0.949 39 H 0.272 0.728 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -6.029 -3.233 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.233 4.233 3 C 0.102 3.898 4 H 0.168 0.832 5 O -0.344 6.344 6 C 0.272 3.728 7 O -0.413 6.413 8 O -0.244 6.244 9 C 0.017 3.983 10 H 0.115 0.885 11 C -0.211 4.211 12 C 0.307 3.693 13 O -0.415 6.415 14 N -0.254 5.254 15 C 0.117 3.883 16 C -0.592 4.592 17 H 0.063 0.937 18 C -0.170 4.170 19 N -0.547 5.547 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.204 1.204 24 C 0.042 3.958 25 C -0.180 4.180 26 C -0.121 4.121 27 C -0.164 4.164 28 C -0.122 4.122 29 C -0.207 4.207 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.015 -5.507 -3.432 14.543 hybrid contribution 1.754 0.416 -0.146 1.809 sum -11.261 -5.091 -3.579 12.866 Atomic orbital electron populations 1.24273 0.94944 1.04257 0.92860 1.23104 0.97371 0.96319 1.06554 1.20687 0.89667 1.00810 0.78601 0.83166 1.86654 1.52506 1.56586 1.38678 1.25776 0.89312 0.71541 0.86199 1.90717 1.17484 1.46143 1.86948 1.86562 1.40396 1.82959 1.14494 1.22395 0.92515 0.99728 0.83675 0.88504 1.22125 1.03539 0.91971 1.03440 1.20356 0.86588 0.79200 0.83126 1.90357 1.15552 1.57647 1.77900 1.45797 1.09790 1.54407 1.15358 1.19562 0.72357 0.97682 0.98728 1.21444 0.92070 0.99566 1.46097 0.93683 1.25518 0.97191 0.99523 0.94732 1.69956 1.05570 1.31666 1.47489 0.85653 0.77940 0.80002 0.78777 1.19199 1.20112 1.20435 1.18334 0.92696 0.96879 0.87928 1.21132 1.00264 1.01314 0.95327 1.21244 0.95551 0.98264 0.97039 1.21445 0.93473 1.01394 1.00065 1.21388 1.00980 0.96965 0.92862 1.22413 0.92870 1.03575 1.01879 0.85215 0.87073 0.85225 0.75141 0.89731 0.89607 0.89724 0.94590 0.93149 0.91910 0.86459 0.83672 0.82847 0.83393 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 14.32 67.78 0.97 -0.76 16 2 C -0.22 -3.71 9.09 25.64 0.23 -3.48 16 3 C 0.16 3.74 3.86 29.10 0.11 3.85 16 4 H 0.15 3.07 7.78 -2.39 -0.02 3.05 16 5 O -0.54 -12.50 12.98 -129.95 -1.69 -14.18 16 6 C 0.43 13.78 7.23 71.24 0.52 14.30 16 7 O -0.52 -20.21 15.54 28.37 0.44 -19.77 16 8 O -0.33 -11.59 9.44 -45.18 -0.43 -12.02 16 9 C 0.08 2.94 2.12 29.85 0.06 3.00 16 10 H 0.10 4.40 6.23 -2.39 -0.01 4.38 16 11 C -0.15 -4.94 9.23 71.98 0.66 -4.28 16 12 C 0.52 22.26 6.88 87.66 0.60 22.87 16 13 O -0.53 -23.60 13.08 15.33 0.20 -23.40 16 14 N -0.53 -23.79 2.69 -635.28 -1.71 -25.50 16 15 C 0.24 11.41 4.04 85.63 0.35 11.76 16 16 C -0.55 -29.61 8.77 25.60 0.22 -29.39 16 17 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 18 C 0.03 1.73 5.46 84.66 0.46 2.19 16 19 N -0.91 -49.61 13.29 21.45 0.28 -49.33 16 20 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 C 0.14 5.74 6.46 38.15 0.25 5.98 16 25 C -0.16 -6.35 9.02 22.39 0.20 -6.15 16 26 C -0.10 -3.20 10.04 22.25 0.22 -2.98 16 27 C -0.15 -3.94 10.04 22.29 0.22 -3.72 16 28 C -0.10 -3.10 10.04 22.25 0.22 -2.87 16 29 C -0.19 -7.12 8.97 22.39 0.20 -6.92 16 30 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.11 1.39 7.83 -2.91 -0.02 1.37 16 32 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.40 7.11 8.78 -74.06 -0.65 6.46 16 34 H 0.08 2.85 6.23 -2.39 -0.01 2.83 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.04 1.81 6.86 -2.39 -0.02 1.80 16 38 H 0.05 2.44 4.47 -2.39 -0.01 2.43 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.12 5.14 6.15 -2.91 -0.02 5.13 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.16 6.33 4.73 -44.47 -0.21 6.12 16 Total: -1.00 -67.77 375.23 4.84 -62.93 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.19 Total: 32.78 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.52 Total: 3.40 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.42 Total: -74.83 kcal Atomic # 8 Polarization: -67.90 SS G_CDS: -1.47 Total: -69.38 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.77 4.84 -62.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814546538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.227 kcal (2) G-P(sol) polarization free energy of solvation -67.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds