Wall clock time and date at job start Tue Mar 31 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50713 * 119.99671 * 2 1 4 4 H 1.08997 * 109.46219 * 244.99580 * 3 2 1 5 5 O 1.42893 * 109.46903 * 4.99423 * 3 2 1 6 6 C 1.50696 * 109.46812 * 124.99581 * 3 2 1 7 7 O 1.20830 * 120.00003 * 244.99476 * 6 3 2 8 8 O 1.34234 * 119.99854 * 65.00301 * 6 3 2 9 9 C 1.45203 * 116.99550 * 179.97438 * 8 6 3 10 10 H 1.08994 * 109.47462 * 30.00174 * 9 8 6 11 11 C 1.52995 * 109.47124 * 269.99755 * 9 8 6 12 12 C 1.50706 * 109.46761 * 149.99696 * 9 8 6 13 13 O 1.21287 * 120.00167 * 8.03075 * 12 9 8 14 14 N 1.34776 * 119.99778 * 188.30123 * 12 9 8 15 15 C 1.46501 * 120.00053 * 5.68822 * 14 12 9 16 16 C 1.50700 * 109.47567 * 86.28190 * 15 14 12 17 17 H 1.08000 * 119.99390 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99687 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47245 * 60.00470 * 20 18 16 22 22 H 1.48503 * 109.46592 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47101 * 299.99930 * 20 18 16 24 24 C 1.39921 * 120.00105 * 185.68260 * 14 12 9 25 25 C 1.38871 * 120.07468 * 187.69723 * 24 14 12 26 26 C 1.38109 * 119.93212 * 179.73904 * 25 24 14 27 27 C 1.38280 * 120.07019 * 0.53518 * 26 25 24 28 28 C 1.38285 * 120.13896 * 359.71584 * 27 26 25 29 29 C 1.38105 * 120.07287 * 0.02600 * 28 27 26 30 30 H 1.08001 * 119.99729 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00353 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00353 * 179.97438 * 2 1 3 33 33 H 0.96698 * 114.00080 * 60.00610 * 5 3 2 34 34 H 1.09002 * 109.47574 * 65.94753 * 11 9 8 35 35 H 1.09001 * 109.47022 * 185.95233 * 11 9 8 36 36 H 1.09006 * 109.47036 * 305.94741 * 11 9 8 37 37 H 1.09005 * 109.46947 * 206.28496 * 15 14 12 38 38 H 1.08997 * 109.47162 * 326.28038 * 15 14 12 39 39 H 0.96999 * 119.99931 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.03224 * 359.97438 * 25 24 14 41 41 H 1.08002 * 119.96688 * 180.24708 * 26 25 24 42 42 H 1.08003 * 119.93138 * 179.69544 * 27 26 25 43 43 H 1.08002 * 119.96212 * 180.02562 * 28 27 26 44 44 H 1.08007 * 120.03956 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3053 0.0000 4 1 2.6213 1.4026 -0.9314 5 8 1.1393 2.3887 0.1173 6 6 3.0203 1.3328 1.1639 7 8 2.8663 2.1357 2.0537 8 8 4.0437 0.4655 1.2121 9 6 4.9256 0.5500 2.3626 10 1 4.3638 0.9071 3.2256 11 6 6.0675 1.5222 2.0595 12 6 5.4929 -0.8138 2.6617 13 8 5.3030 -1.7318 1.8922 14 7 6.2067 -1.0146 3.7872 15 6 6.3265 0.0565 4.7795 16 6 5.1509 0.0030 5.7209 17 1 4.3908 -0.7535 5.5930 18 6 5.0463 0.9191 6.7460 19 7 5.9727 1.8393 6.9025 20 14 3.5894 0.8523 7.9132 21 1 3.5680 -0.4623 8.6034 22 1 3.7109 1.9381 8.9190 23 1 2.3310 1.0285 7.1447 24 6 6.8333 -2.2460 4.0079 25 6 7.4331 -2.5122 5.2318 26 6 8.0460 -3.7307 5.4483 27 6 8.0726 -4.6811 4.4442 28 6 7.4807 -4.4172 3.2226 29 6 6.8616 -3.2027 3.0016 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 0.6074 2.3664 0.9245 34 1 5.6668 2.5296 1.9471 35 1 6.7856 1.5060 2.8794 36 1 6.5636 1.2234 1.1360 37 1 7.2501 -0.0727 5.3439 38 1 6.3424 1.0213 4.2727 39 1 5.8990 2.4841 7.6235 40 1 7.4169 -1.7685 6.0148 41 1 8.5092 -3.9398 6.4013 42 1 8.5568 -5.6314 4.6143 43 1 7.5028 -5.1617 2.4405 44 1 6.3999 -2.9969 2.0471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814546539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:04 Heat of formation + Delta-G solvation = -97.377930 kcal Electronic energy + Delta-G solvation = -29256.018648 eV Core-core repulsion = 25140.361017 eV Total energy + Delta-G solvation = -4115.657631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91470 -40.12613 -38.20112 -37.51679 -36.10958 -35.46074 -33.09156 -32.79267 -31.97730 -30.39031 -29.20229 -28.02371 -27.41466 -24.68434 -23.43666 -22.57103 -21.66359 -20.93985 -20.23450 -19.26912 -18.34288 -17.22668 -16.98811 -16.74652 -16.72368 -16.37318 -16.02214 -15.52056 -15.06275 -14.73194 -14.56128 -14.25383 -13.69396 -13.55303 -13.35944 -13.16008 -13.01307 -12.85751 -12.55098 -12.45130 -12.23273 -12.07724 -11.75369 -11.71747 -11.29872 -11.28857 -11.16932 -11.07542 -10.76262 -10.66343 -10.51322 -10.42369 -10.37616 -10.15186 -9.61582 -9.27166 -8.85448 -8.66103 -8.41152 -7.30398 -6.33156 -4.42435 1.75918 1.77422 1.93279 2.24848 2.49799 3.02574 3.19161 3.23709 3.27489 3.59206 3.94211 4.22540 4.40984 4.44391 4.70284 4.74028 4.99722 5.01024 5.12923 5.18033 5.38749 5.40134 5.47298 5.62993 5.63992 5.83077 5.87411 5.97933 6.06074 6.07070 6.20754 6.29453 6.33589 6.45407 6.52279 6.67025 6.83472 6.91560 6.98806 7.05998 7.13023 7.19440 7.58352 7.68517 7.76019 7.81275 7.93649 8.50273 8.66469 9.26454 10.73258 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008796 B = 0.004694 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.681876 B = 5963.120987 C = 7988.146610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.194 4.194 3 C 0.153 3.847 4 H 0.148 0.852 5 O -0.531 6.531 6 C 0.433 3.567 7 O -0.490 6.490 8 O -0.329 6.329 9 C 0.074 3.926 10 H 0.131 0.869 11 C -0.169 4.169 12 C 0.526 3.474 13 O -0.525 6.525 14 N -0.530 5.530 15 C 0.214 3.786 16 C -0.548 4.548 17 H 0.062 0.938 18 C 0.072 3.928 19 N -0.885 5.885 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.170 3.830 25 C -0.143 4.143 26 C -0.104 4.104 27 C -0.160 4.160 28 C -0.108 4.108 29 C -0.173 4.173 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.387 0.613 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -3.841 -10.489 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.212 4.212 3 C 0.092 3.908 4 H 0.165 0.835 5 O -0.337 6.337 6 C 0.274 3.726 7 O -0.376 6.376 8 O -0.244 6.244 9 C 0.016 3.984 10 H 0.149 0.851 11 C -0.227 4.227 12 C 0.315 3.685 13 O -0.403 6.403 14 N -0.250 5.250 15 C 0.096 3.904 16 C -0.586 4.586 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.523 5.523 20 Si 0.725 3.275 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.075 3.925 25 C -0.164 4.164 26 C -0.123 4.123 27 C -0.179 4.179 28 C -0.126 4.126 29 C -0.193 4.193 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.157 0.843 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.289 -3.626 -11.042 11.845 hybrid contribution -0.897 -0.070 1.689 1.914 sum -3.186 -3.696 -9.353 10.550 Atomic orbital electron populations 1.23938 0.95753 1.02911 0.97767 1.23439 0.96848 0.98074 1.02846 1.20380 0.88061 0.86710 0.95612 0.83508 1.86625 1.52979 1.47445 1.46676 1.24603 0.81015 0.78621 0.88358 1.90741 1.72245 1.36698 1.37916 1.86524 1.37455 1.55323 1.45127 1.22543 0.91998 0.94432 0.89435 0.85142 1.22312 0.97769 0.98778 1.03794 1.20046 0.78346 0.89208 0.80948 1.90366 1.57949 1.42922 1.49103 1.45854 1.45851 1.13714 1.19552 1.20052 0.99384 0.84383 0.86615 1.21309 1.07927 1.15977 1.13425 0.91969 1.24886 0.96507 0.94642 0.97188 1.69883 1.33500 1.16805 1.32063 0.86528 0.82580 0.77963 0.80410 1.19916 1.20861 1.19904 1.18024 0.94385 0.85865 0.94275 1.21120 1.00530 0.98401 0.96325 1.20873 0.99392 0.93259 0.98728 1.20994 1.02975 0.99428 0.94471 1.20999 0.97957 0.96764 0.96907 1.22423 1.02076 0.93222 1.01560 0.87394 0.87450 0.84924 0.76243 0.90769 0.88432 0.91408 0.93063 0.92595 0.92107 0.84336 0.86376 0.87030 0.86667 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 13.91 29.01 0.40 -1.11 16 2 C -0.19 -2.07 9.48 -36.02 -0.34 -2.41 16 3 C 0.15 1.79 4.04 -29.03 -0.12 1.67 16 4 H 0.15 1.40 8.14 -51.93 -0.42 0.97 16 5 O -0.53 -6.14 11.84 -55.13 -0.65 -6.80 16 6 C 0.43 6.85 7.23 36.00 0.26 7.11 16 7 O -0.49 -9.20 15.54 -25.47 -0.40 -9.60 16 8 O -0.33 -5.65 9.42 -45.88 -0.43 -6.09 16 9 C 0.07 1.39 2.16 -27.88 -0.06 1.33 16 10 H 0.13 2.80 6.32 -51.93 -0.33 2.47 16 11 C -0.17 -2.77 9.15 37.16 0.34 -2.43 16 12 C 0.53 10.82 6.91 -10.98 -0.08 10.74 16 13 O -0.52 -11.19 13.04 -13.97 -0.18 -11.38 16 14 N -0.53 -11.18 2.69 -114.73 -0.31 -11.49 16 15 C 0.21 4.86 4.02 -5.19 -0.02 4.84 16 16 C -0.55 -13.91 8.93 -34.44 -0.31 -14.22 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 19 N -0.89 -23.48 13.29 55.43 0.74 -22.74 16 20 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 C 0.17 3.45 6.48 -83.69 -0.54 2.91 16 25 C -0.14 -2.74 9.15 -39.39 -0.36 -3.11 16 26 C -0.10 -1.69 10.04 -39.61 -0.40 -2.08 16 27 C -0.16 -2.41 10.04 -39.55 -0.40 -2.81 16 28 C -0.11 -1.73 10.04 -39.61 -0.40 -2.12 16 29 C -0.17 -3.27 8.97 -39.39 -0.35 -3.62 16 30 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.11 0.87 6.56 -52.49 -0.34 0.53 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.39 3.78 8.03 45.56 0.37 4.14 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.66 5.50 -51.93 -0.29 1.37 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.20 6.34 -51.93 -0.33 0.87 16 38 H 0.06 1.27 4.32 -51.93 -0.22 1.04 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.14 2.81 6.30 -52.49 -0.33 2.48 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.17 3.34 4.74 -55.07 -0.26 3.08 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -29.78 371.64 -7.79 -37.56 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.66 Total: 13.00 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.47 Total: -3.55 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.43 Total: -34.23 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.66 Total: -33.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.78 -7.79 -37.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814546539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.815 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds