Wall clock time and date at job start Tue Mar 31 2020 18:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 N 1.46903 * 109.46954 * 240.00002 * 2 1 3 5 5 C 1.46897 * 110.99992 * 85.00241 * 4 2 1 6 6 C 1.53003 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46872 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47084 * 179.97438 * 7 6 5 9 9 C 1.76203 * 100.00024 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00120 * 359.97438 * 9 8 7 11 11 C 1.38801 * 119.99924 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00190 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46890 * 60.00055 * 13 11 9 15 15 H 1.48494 * 109.47513 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47332 * 300.00588 * 13 11 9 17 17 C 1.50699 * 109.46980 * 120.00114 * 2 1 3 18 18 C 1.38330 * 119.94285 * 79.99660 * 17 2 1 19 19 C 1.38292 * 120.24058 * 179.97438 * 18 17 2 20 20 C 1.38055 * 120.11393 * 0.02562 * 19 18 17 21 21 C 1.39271 * 119.88127 * 359.97438 * 20 19 18 22 22 C 1.48469 * 120.11730 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67356 * 179.68680 * 22 21 20 24 24 N 1.28987 * 107.26916 * 179.83434 * 23 22 21 25 25 N 1.28735 * 108.94013 * 0.43503 * 24 23 22 26 26 H 0.97001 * 125.33851 * 179.71507 * 25 24 23 27 27 N 1.28866 * 109.31668 * 359.72617 * 25 24 23 28 28 C 1.38004 * 119.93876 * 259.97748 * 17 2 1 29 29 H 1.09001 * 109.46767 * 59.99713 * 1 2 3 30 30 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00272 * 1 2 3 32 32 H 1.00894 * 110.99863 * 208.95928 * 4 2 1 33 33 H 1.09006 * 109.47008 * 299.99615 * 5 4 2 34 34 H 1.09001 * 109.47198 * 59.99565 * 5 4 2 35 35 H 1.08998 * 109.46753 * 299.99900 * 6 5 4 36 36 H 1.08994 * 109.46879 * 60.00249 * 6 5 4 37 37 H 1.08996 * 109.47289 * 300.00093 * 7 6 5 38 38 H 1.09006 * 109.47254 * 60.00032 * 7 6 5 39 39 H 0.96992 * 120.00486 * 179.97438 * 12 11 9 40 40 H 1.08007 * 119.88015 * 359.95797 * 18 17 2 41 41 H 1.07997 * 119.94435 * 180.02562 * 19 18 17 42 42 H 1.08001 * 120.05763 * 179.70068 * 20 19 18 43 43 H 1.08000 * 120.06231 * 0.04098 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5950 -0.5333 -3.5745 7 6 2.6599 0.4197 -4.7697 8 16 3.2669 -0.4742 -6.2218 9 6 3.2425 0.8242 -7.4127 10 1 2.9138 1.8126 -7.1273 11 6 3.6456 0.5767 -8.7176 12 7 4.0458 -0.6281 -9.0656 13 14 3.6191 1.9529 -9.9803 14 1 4.5101 3.0532 -9.5321 15 1 4.0926 1.4337 -11.2885 16 1 2.2330 2.4661 -10.1243 17 6 2.0323 -0.7104 1.2304 18 6 2.0662 -2.0929 1.2641 19 6 2.5264 -2.7512 2.3898 20 6 2.9543 -2.0308 3.4870 21 6 2.9224 -0.6387 3.4585 22 6 3.3808 0.1413 4.6357 23 7 3.4124 1.4766 4.7483 24 7 3.8707 1.7511 5.9224 25 7 4.1322 0.6504 6.5367 26 1 4.4918 0.5809 7.4349 27 7 3.8413 -0.3446 5.7711 28 6 2.4581 0.0194 2.3216 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9172 -1.1206 -1.0287 33 1 1.0870 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1182 35 1 3.5903 -0.9273 -3.3691 36 1 1.9182 -1.3565 -3.8029 37 1 1.6644 0.8134 -4.9749 38 1 3.3364 1.2433 -4.5415 39 1 4.3272 -0.8012 -9.9775 40 1 1.7316 -2.6603 0.4081 41 1 2.5511 -3.8307 2.4107 42 1 3.3091 -2.5458 4.3675 43 1 2.4310 1.0987 2.2945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824592266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:34 Heat of formation + Delta-G solvation = 131.118204 kcal Electronic energy + Delta-G solvation = -23980.201095 eV Core-core repulsion = 20381.790173 eV Total energy + Delta-G solvation = -3598.410921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.84678 -39.94971 -37.15137 -34.81553 -34.21772 -33.41927 -32.40145 -31.17621 -30.54992 -29.06885 -25.77617 -25.29413 -25.02723 -24.72994 -22.86286 -22.37423 -21.04003 -20.35726 -19.49457 -17.53374 -17.45562 -17.21037 -16.12544 -15.96901 -15.44166 -14.92951 -14.77890 -14.50758 -14.39359 -14.05867 -13.95829 -13.76046 -13.18917 -13.03658 -12.75320 -12.49663 -12.44945 -12.21766 -11.89570 -11.75453 -11.70682 -11.53241 -11.43116 -11.28807 -11.20856 -11.03627 -10.95174 -10.75763 -10.59955 -10.36263 -9.51872 -9.16306 -9.02439 -8.94734 -8.48790 -8.27174 -6.49436 -6.19907 -3.89931 0.35804 0.81228 1.01937 1.82975 2.00174 3.23604 3.25280 3.27556 3.29814 3.45477 3.58656 3.78609 4.13515 4.25979 4.39742 4.63196 4.77939 4.83906 5.03739 5.05055 5.15860 5.17694 5.20201 5.24248 5.33663 5.42856 5.53248 5.54601 5.63530 5.69597 5.76945 5.82176 5.92769 5.94640 6.05694 6.08763 6.13894 6.19102 6.25910 6.37799 6.56878 6.63638 6.77558 7.03584 7.34784 7.63003 7.74398 8.39224 9.26212 10.88208 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.001657 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.755831 B =16889.670113 C =17341.899172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.123 3.877 3 H 0.054 0.946 4 N -0.683 5.683 5 C 0.063 3.937 6 C -0.095 4.095 7 C -0.113 4.113 8 S -0.132 6.132 9 C -0.517 4.517 10 H 0.071 0.929 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.089 4.089 18 C -0.076 4.076 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.024 4.024 22 C 0.223 3.777 23 N -0.268 5.268 24 N -0.049 5.049 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.296 5.296 28 C -0.069 4.069 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.343 0.657 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.267 0.733 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -1.701 32.349 32.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.072 0.928 4 N -0.315 5.315 5 C -0.068 4.068 6 C -0.134 4.134 7 C -0.262 4.262 8 S 0.096 5.904 9 C -0.665 4.665 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.506 5.506 13 Si 0.744 3.256 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.090 4.090 18 C -0.095 4.095 19 C -0.141 4.141 20 C -0.101 4.101 21 C -0.027 4.027 22 C -0.057 4.057 23 N -0.141 5.141 24 N -0.044 5.044 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.147 5.147 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.132 -2.572 32.242 32.496 hybrid contribution 0.647 2.293 -0.021 2.383 sum -2.485 -0.279 32.221 32.318 Atomic orbital electron populations 1.21791 0.93361 1.02719 1.01481 1.20442 0.96264 0.95368 0.86569 0.92793 1.60629 1.33603 1.33467 1.03753 1.22090 1.00825 0.93661 0.90178 1.21236 1.01624 0.98345 0.92155 1.23224 1.02823 1.01179 0.98953 1.84617 1.85425 1.18776 1.01594 1.22660 1.51020 0.96735 0.96099 0.91037 1.25010 0.94641 0.96404 0.97725 1.70011 1.41365 1.20035 1.19143 0.86232 0.78664 0.81098 0.79580 1.19973 1.20828 1.19942 1.19909 0.99597 0.94053 0.95442 1.21347 0.96102 0.93873 0.98217 1.21140 0.99556 1.00356 0.93037 1.21159 0.97912 0.92033 0.99042 1.17143 1.04111 0.91838 0.89654 1.23748 0.99873 0.88623 0.93420 1.76113 1.16544 1.12955 1.08474 1.78937 1.12404 1.11827 1.01252 1.47737 1.41498 1.01030 1.17178 0.67032 1.74916 1.19376 1.16805 1.03620 1.21046 0.96084 1.00558 0.91285 0.92080 0.91715 0.92612 0.83851 0.90931 0.95236 0.91849 0.90703 0.92113 0.92366 0.92281 0.84245 0.85058 0.85153 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.39 37.16 0.35 -0.90 16 2 C 0.12 1.19 2.82 -68.86 -0.19 0.99 16 3 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 4 N -0.68 -7.47 5.69 -107.95 -0.61 -8.08 16 5 C 0.06 0.81 5.48 -3.82 -0.02 0.79 16 6 C -0.09 -1.52 5.48 -26.73 -0.15 -1.66 16 7 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 8 S -0.13 -3.48 21.44 -107.50 -2.30 -5.79 16 9 C -0.52 -14.95 9.50 30.94 0.29 -14.66 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 12 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 13 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 17 C -0.09 -0.81 4.71 -104.67 -0.49 -1.30 16 18 C -0.08 -0.63 9.00 -39.53 -0.36 -0.99 16 19 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 20 C -0.08 -0.64 9.70 -39.26 -0.38 -1.02 16 21 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 22 C 0.22 2.20 7.94 -156.31 -1.24 0.96 16 23 N -0.27 -2.87 12.23 32.16 0.39 -2.48 16 24 N -0.05 -0.43 13.47 60.35 0.81 0.38 16 25 N -0.23 -1.33 7.90 60.35 0.48 -0.85 16 26 H 0.48 0.41 8.96 -340.37 -3.05 -2.64 16 27 N -0.30 -2.41 12.08 32.17 0.39 -2.02 16 28 C -0.07 -0.64 9.32 -39.26 -0.37 -1.01 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.34 3.62 7.99 -39.30 -0.31 3.31 16 33 H 0.07 0.94 7.44 -51.93 -0.39 0.55 16 34 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 38 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.14 1.11 7.71 -52.48 -0.40 0.71 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.87 7.88 -52.49 -0.41 0.46 16 43 H 0.13 1.23 7.86 -52.49 -0.41 0.82 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -33.70 381.35 -11.53 -45.23 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.69 Total: -2.32 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.45 Total: -21.06 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 2.19 Total: -38.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.70 -11.53 -45.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824592266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.351 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds