Wall clock time and date at job start Tue Mar 31 2020 18:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 N 1.46903 * 109.46954 * 240.00002 * 2 1 3 5 5 C 1.46897 * 110.99992 * 85.00241 * 4 2 1 6 6 C 1.53003 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46872 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47084 * 179.97438 * 7 6 5 9 9 C 1.76203 * 100.00024 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00120 * 359.97438 * 9 8 7 11 11 C 1.38801 * 119.99924 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00190 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46890 * 60.00055 * 13 11 9 15 15 H 1.48494 * 109.47513 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47332 * 300.00588 * 13 11 9 17 17 C 1.50699 * 109.46980 * 120.00114 * 2 1 3 18 18 C 1.38330 * 119.94285 * 79.99660 * 17 2 1 19 19 C 1.38292 * 120.24058 * 179.97438 * 18 17 2 20 20 C 1.38055 * 120.11393 * 0.02562 * 19 18 17 21 21 C 1.39271 * 119.88127 * 359.97438 * 20 19 18 22 22 C 1.48469 * 120.11730 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67356 * 179.68680 * 22 21 20 24 24 N 1.28987 * 107.26916 * 179.83434 * 23 22 21 25 25 N 1.28735 * 108.94013 * 0.43503 * 24 23 22 26 26 H 0.97001 * 125.33851 * 179.71507 * 25 24 23 27 27 N 1.28866 * 109.31668 * 359.72617 * 25 24 23 28 28 C 1.38004 * 119.93876 * 259.97748 * 17 2 1 29 29 H 1.09001 * 109.46767 * 59.99713 * 1 2 3 30 30 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00272 * 1 2 3 32 32 H 1.00894 * 110.99863 * 208.95928 * 4 2 1 33 33 H 1.09006 * 109.47008 * 299.99615 * 5 4 2 34 34 H 1.09001 * 109.47198 * 59.99565 * 5 4 2 35 35 H 1.08998 * 109.46753 * 299.99900 * 6 5 4 36 36 H 1.08994 * 109.46879 * 60.00249 * 6 5 4 37 37 H 1.08996 * 109.47289 * 300.00093 * 7 6 5 38 38 H 1.09006 * 109.47254 * 60.00032 * 7 6 5 39 39 H 0.96992 * 120.00486 * 179.97438 * 12 11 9 40 40 H 1.08007 * 119.88015 * 359.95797 * 18 17 2 41 41 H 1.07997 * 119.94435 * 180.02562 * 19 18 17 42 42 H 1.08001 * 120.05763 * 179.70068 * 20 19 18 43 43 H 1.08000 * 120.06231 * 0.04098 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5950 -0.5333 -3.5745 7 6 2.6599 0.4197 -4.7697 8 16 3.2669 -0.4742 -6.2218 9 6 3.2425 0.8242 -7.4127 10 1 2.9138 1.8126 -7.1273 11 6 3.6456 0.5767 -8.7176 12 7 4.0458 -0.6281 -9.0656 13 14 3.6191 1.9529 -9.9803 14 1 4.5101 3.0532 -9.5321 15 1 4.0926 1.4337 -11.2885 16 1 2.2330 2.4661 -10.1243 17 6 2.0323 -0.7104 1.2304 18 6 2.0662 -2.0929 1.2641 19 6 2.5264 -2.7512 2.3898 20 6 2.9543 -2.0308 3.4870 21 6 2.9224 -0.6387 3.4585 22 6 3.3808 0.1413 4.6357 23 7 3.4124 1.4766 4.7483 24 7 3.8707 1.7511 5.9224 25 7 4.1322 0.6504 6.5367 26 1 4.4918 0.5809 7.4349 27 7 3.8413 -0.3446 5.7711 28 6 2.4581 0.0194 2.3216 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9172 -1.1206 -1.0287 33 1 1.0870 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1182 35 1 3.5903 -0.9273 -3.3691 36 1 1.9182 -1.3565 -3.8029 37 1 1.6644 0.8134 -4.9749 38 1 3.3364 1.2433 -4.5415 39 1 4.3272 -0.8012 -9.9775 40 1 1.7316 -2.6603 0.4081 41 1 2.5511 -3.8307 2.4107 42 1 3.3091 -2.5458 4.3675 43 1 2.4310 1.0987 2.2945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824592266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:33 Heat of formation + Delta-G solvation = 109.638150 kcal Electronic energy + Delta-G solvation = -23981.132540 eV Core-core repulsion = 20381.790173 eV Total energy + Delta-G solvation = -3599.342366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.48324 -40.61860 -38.03874 -35.51639 -35.11514 -34.58784 -34.24264 -31.94692 -31.37128 -29.86752 -27.82718 -26.33575 -25.84657 -25.46913 -23.72618 -23.02823 -22.26885 -21.08635 -20.10845 -19.52042 -18.16522 -17.94446 -16.98317 -16.88026 -16.69469 -16.45358 -16.10568 -15.59151 -15.34565 -15.11816 -14.83954 -14.69822 -14.41794 -14.00719 -13.68260 -13.53033 -13.39429 -13.33613 -13.04786 -12.91735 -12.84181 -12.59496 -12.44322 -12.42525 -12.29499 -12.23395 -12.18393 -11.90819 -11.77708 -11.55837 -11.30808 -11.11904 -10.29788 -9.80469 -9.59673 -9.39074 -8.64179 -8.35681 -6.11630 -0.27843 0.16373 0.38598 1.31842 1.32507 1.40771 1.41606 1.48438 1.77096 2.30195 2.63945 2.81429 2.98241 3.09834 3.21523 3.37301 3.69409 3.99907 4.06831 4.12046 4.22048 4.27651 4.34171 4.37450 4.39709 4.49870 4.54889 4.59369 4.63318 4.80757 4.83479 4.89061 4.99135 5.02217 5.10585 5.24135 5.35257 5.40674 5.40891 5.43129 5.50443 5.58165 5.60196 5.95201 6.10953 6.19351 6.46899 7.06333 7.09222 8.73405 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.001657 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.755831 B =16889.670113 C =17341.899172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.126 3.874 3 H 0.052 0.948 4 N -0.681 5.681 5 C 0.075 3.925 6 C -0.082 4.082 7 C -0.089 4.089 8 S -0.197 6.197 9 C -0.541 4.541 10 H 0.072 0.928 11 C 0.015 3.985 12 N -0.907 5.907 13 Si 0.993 3.007 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.265 1.265 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.118 4.118 20 C -0.080 4.080 21 C -0.035 4.035 22 C 0.210 3.790 23 N -0.298 5.298 24 N -0.059 5.059 25 N -0.200 5.200 26 H 0.494 0.506 27 N -0.294 5.294 28 C -0.077 4.077 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.346 0.654 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.271 0.729 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -1.441 33.615 33.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 H 0.070 0.930 4 N -0.313 5.313 5 C -0.056 4.056 6 C -0.121 4.121 7 C -0.238 4.238 8 S 0.032 5.968 9 C -0.688 4.688 10 H 0.090 0.910 11 C -0.190 4.190 12 N -0.543 5.543 13 Si 0.815 3.185 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.189 1.189 17 C -0.094 4.094 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.100 4.100 21 C -0.039 4.039 22 C -0.070 4.070 23 N -0.170 5.170 24 N -0.054 5.054 25 N -0.051 5.051 26 H 0.354 0.646 27 N -0.146 5.146 28 C -0.098 4.098 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.309 -2.307 33.543 33.785 hybrid contribution 0.716 2.160 -0.238 2.288 sum -2.593 -0.147 33.305 33.406 Atomic orbital electron populations 1.21767 0.92978 1.02682 1.01639 1.20417 0.96485 0.95187 0.86220 0.93025 1.60584 1.33868 1.33064 1.03768 1.21863 1.00784 0.93439 0.89476 1.21113 1.01749 0.97496 0.91775 1.23166 1.02279 1.01213 0.97163 1.84610 1.86339 1.20924 1.04920 1.23028 1.51443 0.97146 0.97219 0.90977 1.26062 0.93815 0.99167 0.99923 1.70146 1.42064 1.22262 1.19838 0.85081 0.79159 0.77645 0.76625 1.19001 1.19924 1.18936 1.19824 1.00148 0.94416 0.95037 1.21448 0.96142 0.93546 0.98756 1.21403 0.98357 1.01560 0.92236 1.21349 0.97461 0.91517 0.99707 1.17287 1.04501 0.92505 0.89582 1.23910 1.00440 0.88538 0.94071 1.76090 1.17791 1.13688 1.09417 1.78872 1.12851 1.12531 1.01127 1.47802 1.39681 1.00034 1.17613 0.64640 1.74878 1.19227 1.17137 1.03369 1.21027 0.96674 1.00427 0.91662 0.92618 0.91819 0.91758 0.83488 0.90656 0.94926 0.91865 0.91265 0.91919 0.92192 0.91972 0.83933 0.82659 0.83868 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.39 71.98 0.68 -1.62 16 2 C 0.13 2.30 2.82 44.17 0.12 2.42 16 3 H 0.05 0.98 7.66 -2.39 -0.02 0.96 16 4 N -0.68 -14.03 5.69 -495.44 -2.82 -16.85 16 5 C 0.08 1.84 5.48 86.30 0.47 2.31 16 6 C -0.08 -2.58 5.48 30.59 0.17 -2.41 16 7 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 8 S -0.20 -10.54 21.44 -56.49 -1.21 -11.75 16 9 C -0.54 -31.56 9.50 67.95 0.65 -30.91 16 10 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 11 C 0.02 0.88 5.49 84.86 0.47 1.35 16 12 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 13 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 C -0.09 -1.60 4.71 -19.90 -0.09 -1.69 16 18 C -0.08 -1.20 9.00 22.30 0.20 -1.00 16 19 C -0.12 -1.48 10.03 22.24 0.22 -1.25 16 20 C -0.08 -1.14 9.70 22.47 0.22 -0.92 16 21 C -0.04 -0.63 5.88 -20.04 -0.12 -0.75 16 22 C 0.21 4.00 7.94 137.38 1.09 5.09 16 23 N -0.30 -6.31 12.23 -52.18 -0.64 -6.95 16 24 N -0.06 -0.99 13.47 37.02 0.50 -0.49 16 25 N -0.20 -2.05 7.90 37.02 0.29 -1.76 16 26 H 0.49 -0.04 8.96 -347.54 -3.12 -3.16 16 27 N -0.29 -4.38 12.08 -52.13 -0.63 -5.01 16 28 C -0.08 -1.40 9.32 22.48 0.21 -1.20 16 29 H 0.05 1.01 7.45 -2.39 -0.02 1.00 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.35 6.86 7.99 -89.70 -0.72 6.14 16 33 H 0.08 1.83 7.44 -2.38 -0.02 1.81 16 34 H 0.03 0.79 8.06 -2.39 -0.02 0.77 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.14 2.04 7.71 -2.91 -0.02 2.02 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.61 7.88 -2.91 -0.02 1.59 16 43 H 0.13 2.40 7.86 -2.91 -0.02 2.38 16 Total: -1.00 -72.77 381.35 -0.29 -73.06 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -2.79 Total: 12.05 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.69 Total: -33.73 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.01 Total: -85.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.21 Total: -11.75 kcal Total: -72.77 -0.29 -73.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824592266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.697 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds