Wall clock time and date at job start Tue Mar 31 2020 18:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 5 5 C 1.46904 * 110.99949 * 274.99434 * 4 2 1 6 6 C 1.52997 * 109.47280 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47211 * 180.02562 * 6 5 4 8 8 S 1.81004 * 109.47064 * 180.02562 * 7 6 5 9 9 C 1.76196 * 99.99841 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00490 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99712 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00254 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99769 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47259 * 90.00081 * 13 11 9 15 15 H 1.48496 * 109.47428 * 209.99674 * 13 11 9 16 16 H 1.48499 * 109.47659 * 330.00177 * 13 11 9 17 17 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 18 18 C 1.38306 * 119.88289 * 279.72992 * 17 2 1 19 19 C 1.38030 * 120.11468 * 179.76411 * 18 17 2 20 20 C 1.39305 * 119.88313 * 0.48827 * 19 18 17 21 21 C 1.48462 * 120.11660 * 179.78927 * 20 19 18 22 22 N 1.34046 * 126.67232 * 180.02562 * 21 20 19 23 23 N 1.28977 * 107.27016 * 179.97438 * 22 21 20 24 24 N 1.28731 * 108.94298 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.34117 * 179.97438 * 24 23 22 26 26 N 1.28865 * 109.31635 * 359.75524 * 24 23 22 27 27 C 1.39300 * 119.76181 * 359.76498 * 20 19 18 28 28 C 1.38022 * 119.88092 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.00896 * 111.00544 * 38.95527 * 4 2 1 33 33 H 1.09002 * 109.47300 * 300.00868 * 5 4 2 34 34 H 1.09006 * 109.46967 * 60.00497 * 5 4 2 35 35 H 1.09008 * 109.47067 * 300.00177 * 6 5 4 36 36 H 1.08997 * 109.46978 * 59.99938 * 6 5 4 37 37 H 1.08991 * 109.46837 * 299.99790 * 7 6 5 38 38 H 1.09002 * 109.46940 * 60.00123 * 7 6 5 39 39 H 0.96997 * 120.00566 * 180.02562 * 12 11 9 40 40 H 1.08001 * 119.94301 * 0.02562 * 18 17 2 41 41 H 1.08000 * 120.06112 * 180.25013 * 19 18 17 42 42 H 1.08004 * 120.05808 * 180.02562 * 27 20 19 43 43 H 1.08006 * 119.93897 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6610 0.4201 4.7695 8 16 3.2694 -0.4734 6.2212 9 6 3.2433 0.8245 7.4125 10 1 2.9140 1.8128 7.1273 11 6 3.6469 0.5772 8.7173 12 7 4.0496 -0.6269 9.0646 13 14 3.6200 1.9534 9.9801 14 1 2.2984 1.9784 10.6569 15 1 4.6872 1.7228 10.9865 16 1 3.8527 3.2533 9.3008 17 6 2.0324 -0.7105 -1.2304 18 6 2.0710 -2.0927 -1.2605 19 6 2.5257 -2.7485 -2.3867 20 6 2.9556 -2.0155 -3.4906 21 6 3.4500 -2.7154 -4.7029 22 7 3.8930 -2.1448 -5.8321 23 7 4.2284 -3.0962 -6.6358 24 7 4.0146 -4.2264 -6.0578 25 1 4.1837 -5.0976 -6.4493 26 7 3.5450 -4.0186 -4.8759 27 6 2.9195 -0.6234 -3.4529 28 6 2.4590 0.0222 -2.3233 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.4495 -1.4979 1.4101 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6164 2.5526 35 1 1.9199 -1.3567 3.8031 36 1 3.5915 -0.9263 3.3684 37 1 3.3369 1.2441 4.5409 38 1 1.6653 0.8132 4.9752 39 1 4.3314 -0.7999 9.9765 40 1 1.7409 -2.6600 -0.4028 41 1 2.5517 -3.8279 -2.4108 42 1 3.2513 -0.0504 -4.3062 43 1 2.4302 1.1014 -2.2932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824594034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:37 Heat of formation + Delta-G solvation = 130.771557 kcal Electronic energy + Delta-G solvation = -23821.382447 eV Core-core repulsion = 20222.956494 eV Total energy + Delta-G solvation = -3598.425953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.79744 -39.86556 -37.30398 -34.80211 -34.23283 -33.20276 -32.41793 -31.26637 -30.59553 -28.98772 -25.79287 -25.37328 -25.02770 -24.41861 -22.96496 -22.21324 -21.17003 -20.61623 -19.53998 -17.48467 -17.46238 -17.20959 -16.19203 -15.63712 -15.47417 -14.80056 -14.72521 -14.64528 -14.23295 -13.99400 -13.88516 -13.58906 -13.48075 -13.09454 -12.90633 -12.80761 -12.53445 -12.14357 -12.00478 -11.75250 -11.70899 -11.52264 -11.35183 -11.17691 -11.16477 -11.06567 -11.04785 -10.78419 -10.60737 -10.41795 -9.52655 -9.19089 -9.04891 -8.79789 -8.47709 -8.28603 -6.51312 -6.21728 -3.91782 0.41166 0.85392 1.17540 1.88220 2.04899 3.21974 3.22996 3.29771 3.35436 3.50685 3.58955 3.85907 4.08899 4.24029 4.52242 4.65568 4.73341 4.92420 4.93571 4.99510 5.11141 5.14232 5.20376 5.26231 5.29556 5.34824 5.46076 5.52185 5.58304 5.63170 5.73216 5.79730 5.86818 5.92501 5.97481 6.09643 6.14535 6.17152 6.33756 6.36263 6.61101 6.64165 6.74855 6.99324 7.29175 7.61508 7.79214 8.37612 9.24562 10.86452 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.001566 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.400812 B =17873.027404 C =18397.013917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.117 3.883 3 H 0.089 0.911 4 N -0.682 5.682 5 C 0.064 3.936 6 C -0.096 4.096 7 C -0.112 4.112 8 S -0.133 6.133 9 C -0.517 4.517 10 H 0.072 0.928 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.040 4.040 18 C -0.101 4.101 19 C -0.078 4.078 20 C -0.030 4.030 21 C 0.224 3.776 22 N -0.270 5.270 23 N -0.051 5.051 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.295 5.295 27 C -0.074 4.074 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.267 0.733 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -4.787 -29.950 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.007 3.993 3 H 0.107 0.893 4 N -0.312 5.312 5 C -0.066 4.066 6 C -0.134 4.134 7 C -0.262 4.262 8 S 0.096 5.904 9 C -0.665 4.665 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.744 3.256 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.042 4.042 18 C -0.119 4.119 19 C -0.098 4.098 20 C -0.034 4.034 21 C -0.055 4.055 22 N -0.143 5.143 23 N -0.046 5.046 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.147 5.147 27 C -0.094 4.094 28 C -0.137 4.137 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.088 -5.941 -30.453 31.295 hybrid contribution -1.304 1.601 1.078 2.329 sum -5.392 -4.339 -29.375 30.179 Atomic orbital electron populations 1.22491 0.95965 1.02653 1.02644 1.20515 0.92840 0.97626 0.88322 0.89254 1.60579 1.57117 1.09929 1.03581 1.22065 0.99403 0.95396 0.89767 1.21244 1.02485 0.97820 0.91894 1.23220 1.02700 1.01296 0.98937 1.84635 1.85457 1.18788 1.01554 1.22698 1.50955 0.96791 0.96058 0.90989 1.25010 0.94610 0.96409 0.97752 1.70017 1.41345 1.20102 1.19059 0.86173 0.77971 0.81197 0.80226 1.20301 1.20756 1.19697 1.20019 0.95825 0.93879 0.94432 1.20860 0.99674 0.93913 0.97433 1.21144 0.96660 1.00218 0.91801 1.17200 1.04293 0.92540 0.89337 1.23783 1.00167 0.86020 0.95536 1.76080 1.14983 1.22565 1.00699 1.78906 1.15799 0.88359 1.21577 1.47732 1.40275 1.11266 1.08194 0.67054 1.74943 1.18934 1.18936 1.01853 1.21088 0.97363 0.92482 0.98509 1.20938 0.99915 1.00155 0.92741 0.91804 0.92062 0.91929 0.83952 0.91000 0.95162 0.91835 0.90693 0.92121 0.92363 0.92320 0.85158 0.85115 0.84828 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.14 37.16 0.34 -1.02 16 2 C 0.12 1.03 2.79 -68.86 -0.19 0.83 16 3 H 0.09 0.78 7.65 -51.93 -0.40 0.39 16 4 N -0.68 -7.15 5.69 -107.94 -0.61 -7.76 16 5 C 0.06 0.79 5.48 -3.82 -0.02 0.76 16 6 C -0.10 -1.50 5.48 -26.73 -0.15 -1.65 16 7 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 8 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 9 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 12 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 13 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 C -0.04 -0.36 4.96 -104.57 -0.52 -0.88 16 18 C -0.10 -0.89 9.31 -39.63 -0.37 -1.26 16 19 C -0.08 -0.70 9.70 -39.26 -0.38 -1.08 16 20 C -0.03 -0.29 5.88 -104.89 -0.62 -0.91 16 21 C 0.22 2.27 7.94 -156.31 -1.24 1.03 16 22 N -0.27 -2.86 12.23 32.15 0.39 -2.47 16 23 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 24 N -0.23 -1.40 7.90 60.35 0.48 -0.92 16 25 H 0.48 0.58 8.96 -340.38 -3.05 -2.48 16 26 N -0.30 -2.55 12.08 32.17 0.39 -2.16 16 27 C -0.07 -0.66 9.70 -39.27 -0.38 -1.04 16 28 C -0.12 -0.99 9.65 -39.63 -0.38 -1.38 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 31 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 32 H 0.34 3.28 7.81 -39.29 -0.31 2.97 16 33 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 1.03 7.22 -52.49 -0.38 0.65 16 41 H 0.13 1.04 7.88 -52.49 -0.41 0.63 16 42 H 0.13 1.07 7.89 -52.48 -0.41 0.66 16 43 H 0.13 0.84 8.03 -52.48 -0.42 0.42 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -33.91 380.95 -11.55 -45.46 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.65 Total: -2.47 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.50 Total: -21.23 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 2.19 Total: -38.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.91 -11.55 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824594034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.232 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds