Wall clock time and date at job start Tue Mar 31 2020 18:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 5 5 C 1.46904 * 110.99949 * 274.99434 * 4 2 1 6 6 C 1.52997 * 109.47280 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47211 * 180.02562 * 6 5 4 8 8 S 1.81004 * 109.47064 * 180.02562 * 7 6 5 9 9 C 1.76196 * 99.99841 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00490 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99712 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00254 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99769 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47259 * 90.00081 * 13 11 9 15 15 H 1.48496 * 109.47428 * 209.99674 * 13 11 9 16 16 H 1.48499 * 109.47659 * 330.00177 * 13 11 9 17 17 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 18 18 C 1.38306 * 119.88289 * 279.72992 * 17 2 1 19 19 C 1.38030 * 120.11468 * 179.76411 * 18 17 2 20 20 C 1.39305 * 119.88313 * 0.48827 * 19 18 17 21 21 C 1.48462 * 120.11660 * 179.78927 * 20 19 18 22 22 N 1.34046 * 126.67232 * 180.02562 * 21 20 19 23 23 N 1.28977 * 107.27016 * 179.97438 * 22 21 20 24 24 N 1.28731 * 108.94298 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.34117 * 179.97438 * 24 23 22 26 26 N 1.28865 * 109.31635 * 359.75524 * 24 23 22 27 27 C 1.39300 * 119.76181 * 359.76498 * 20 19 18 28 28 C 1.38022 * 119.88092 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.00896 * 111.00544 * 38.95527 * 4 2 1 33 33 H 1.09002 * 109.47300 * 300.00868 * 5 4 2 34 34 H 1.09006 * 109.46967 * 60.00497 * 5 4 2 35 35 H 1.09008 * 109.47067 * 300.00177 * 6 5 4 36 36 H 1.08997 * 109.46978 * 59.99938 * 6 5 4 37 37 H 1.08991 * 109.46837 * 299.99790 * 7 6 5 38 38 H 1.09002 * 109.46940 * 60.00123 * 7 6 5 39 39 H 0.96997 * 120.00566 * 180.02562 * 12 11 9 40 40 H 1.08001 * 119.94301 * 0.02562 * 18 17 2 41 41 H 1.08000 * 120.06112 * 180.25013 * 19 18 17 42 42 H 1.08004 * 120.05808 * 180.02562 * 27 20 19 43 43 H 1.08006 * 119.93897 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6610 0.4201 4.7695 8 16 3.2694 -0.4734 6.2212 9 6 3.2433 0.8245 7.4125 10 1 2.9140 1.8128 7.1273 11 6 3.6469 0.5772 8.7173 12 7 4.0496 -0.6269 9.0646 13 14 3.6200 1.9534 9.9801 14 1 2.2984 1.9784 10.6569 15 1 4.6872 1.7228 10.9865 16 1 3.8527 3.2533 9.3008 17 6 2.0324 -0.7105 -1.2304 18 6 2.0710 -2.0927 -1.2605 19 6 2.5257 -2.7485 -2.3867 20 6 2.9556 -2.0155 -3.4906 21 6 3.4500 -2.7154 -4.7029 22 7 3.8930 -2.1448 -5.8321 23 7 4.2284 -3.0962 -6.6358 24 7 4.0146 -4.2264 -6.0578 25 1 4.1837 -5.0976 -6.4493 26 7 3.5450 -4.0186 -4.8759 27 6 2.9195 -0.6234 -3.4529 28 6 2.4590 0.0222 -2.3233 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.4495 -1.4979 1.4101 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6164 2.5526 35 1 1.9199 -1.3567 3.8031 36 1 3.5915 -0.9263 3.3684 37 1 3.3369 1.2441 4.5409 38 1 1.6653 0.8132 4.9752 39 1 4.3314 -0.7999 9.9765 40 1 1.7409 -2.6600 -0.4028 41 1 2.5517 -3.8279 -2.4108 42 1 3.2513 -0.0504 -4.3062 43 1 2.4302 1.1014 -2.2932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824594034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:36 Heat of formation + Delta-G solvation = 109.130660 kcal Electronic energy + Delta-G solvation = -23822.320866 eV Core-core repulsion = 20222.956494 eV Total energy + Delta-G solvation = -3599.364373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.45470 -40.53618 -38.13517 -35.56531 -35.07262 -34.59009 -34.06618 -31.92306 -31.48786 -29.74496 -27.81589 -26.33032 -25.70900 -25.43425 -23.63607 -22.97274 -22.31769 -21.36346 -20.15766 -19.52951 -18.13738 -17.89827 -17.04654 -16.88268 -16.47491 -16.40899 -16.07434 -15.49294 -15.26965 -14.92013 -14.78260 -14.64226 -14.26472 -14.18343 -13.74853 -13.74007 -13.42745 -13.30612 -13.12728 -13.04346 -12.88613 -12.60146 -12.44189 -12.38871 -12.35585 -12.19701 -11.91972 -11.83673 -11.74713 -11.68182 -11.29019 -11.12756 -10.28899 -9.84489 -9.49845 -9.27424 -8.64293 -8.35915 -6.11800 -0.25659 0.18754 0.52234 1.32467 1.34153 1.40311 1.43498 1.49828 1.77778 2.30229 2.70014 2.84990 2.98290 3.18355 3.21209 3.37918 3.83382 3.99507 4.08248 4.09908 4.23417 4.25331 4.35948 4.37816 4.42552 4.44877 4.55618 4.58238 4.68119 4.79605 4.84211 4.87712 4.96983 5.00122 5.17195 5.26699 5.27456 5.36307 5.41113 5.46102 5.51149 5.61864 5.67328 5.99180 6.14355 6.19443 6.50234 7.06364 7.12026 8.73437 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.001566 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.400812 B =17873.027404 C =18397.013917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.121 3.879 3 H 0.093 0.907 4 N -0.687 5.687 5 C 0.078 3.922 6 C -0.084 4.084 7 C -0.088 4.088 8 S -0.200 6.200 9 C -0.539 4.539 10 H 0.073 0.927 11 C 0.015 3.985 12 N -0.907 5.907 13 Si 0.994 3.006 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.263 1.263 17 C -0.047 4.047 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.042 4.042 21 C 0.212 3.788 22 N -0.295 5.295 23 N -0.058 5.058 24 N -0.202 5.202 25 H 0.494 0.506 26 N -0.299 5.299 27 C -0.080 4.080 28 C -0.119 4.119 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.347 0.653 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.271 0.729 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -3.874 -30.659 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.111 0.889 4 N -0.318 5.318 5 C -0.053 4.053 6 C -0.123 4.123 7 C -0.237 4.237 8 S 0.029 5.971 9 C -0.687 4.687 10 H 0.091 0.909 11 C -0.190 4.190 12 N -0.544 5.544 13 Si 0.816 3.184 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.048 4.048 18 C -0.124 4.124 19 C -0.103 4.103 20 C -0.045 4.045 21 C -0.068 4.068 22 N -0.167 5.167 23 N -0.053 5.053 24 N -0.053 5.053 25 H 0.353 0.647 26 N -0.151 5.151 27 C -0.100 4.100 28 C -0.137 4.137 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.799 -5.046 -31.195 31.963 hybrid contribution -1.081 1.222 1.164 2.004 sum -5.880 -3.824 -30.031 30.839 Atomic orbital electron populations 1.22436 0.94918 1.02957 1.02936 1.20506 0.93597 0.97472 0.87272 0.88938 1.60501 1.57941 1.09979 1.03423 1.21818 0.99679 0.95017 0.88787 1.21131 1.02201 0.97274 0.91729 1.23160 1.02266 1.01262 0.97010 1.84647 1.86441 1.21035 1.05025 1.23058 1.51310 0.97181 0.97140 0.90910 1.26064 0.93801 0.99151 0.99971 1.70152 1.42106 1.22359 1.19776 0.85021 0.78434 0.77801 0.77184 1.19234 1.19989 1.18729 1.20097 0.96102 0.93964 0.94658 1.20994 0.99650 0.94154 0.97615 1.21233 0.96713 1.00589 0.91745 1.17369 1.04659 0.93023 0.89499 1.23936 1.00656 0.86459 0.95738 1.76055 1.16011 1.23459 1.01174 1.78840 1.16109 0.88832 1.21555 1.47790 1.38376 1.11771 1.07330 0.64718 1.74907 1.19106 1.18470 1.02625 1.21211 0.97453 0.92377 0.98948 1.21146 0.99187 1.01129 0.92259 0.90927 0.91793 0.92171 0.83321 0.90926 0.94155 0.91702 0.91808 0.92060 0.91855 0.91997 0.84454 0.84545 0.84392 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.14 71.98 0.66 -1.59 16 2 C 0.12 1.87 2.79 44.17 0.12 1.99 16 3 H 0.09 1.39 7.65 -2.39 -0.02 1.37 16 4 N -0.69 -13.12 5.69 -495.42 -2.82 -15.94 16 5 C 0.08 1.76 5.48 86.30 0.47 2.23 16 6 C -0.08 -2.57 5.48 30.59 0.17 -2.40 16 7 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 8 S -0.20 -10.64 21.44 -56.49 -1.21 -11.86 16 9 C -0.54 -31.20 9.50 67.96 0.65 -30.56 16 10 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 11 C 0.01 0.86 5.49 84.86 0.47 1.32 16 12 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 13 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 C -0.05 -0.76 4.96 -19.83 -0.10 -0.85 16 18 C -0.11 -1.75 9.31 22.24 0.21 -1.54 16 19 C -0.08 -1.42 9.70 22.48 0.22 -1.21 16 20 C -0.04 -0.79 5.88 -20.04 -0.12 -0.91 16 21 C 0.21 4.17 7.94 137.38 1.09 5.26 16 22 N -0.29 -6.14 12.23 -52.18 -0.64 -6.77 16 23 N -0.06 -0.98 13.47 37.02 0.50 -0.48 16 24 N -0.20 -2.24 7.90 37.02 0.29 -1.95 16 25 H 0.49 0.46 8.96 -347.54 -3.12 -2.66 16 26 N -0.30 -4.89 12.08 -52.13 -0.63 -5.52 16 27 C -0.08 -1.35 9.70 22.47 0.22 -1.13 16 28 C -0.12 -1.81 9.65 22.24 0.21 -1.59 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.06 0.82 7.45 -2.39 -0.02 0.80 16 32 H 0.35 6.01 7.81 -89.70 -0.70 5.31 16 33 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 34 H 0.04 0.85 7.44 -2.38 -0.02 0.83 16 35 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.38 8.14 -2.40 -0.02 2.36 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.14 2.00 7.22 -2.91 -0.02 1.98 16 41 H 0.14 2.09 7.88 -2.91 -0.02 2.07 16 42 H 0.14 2.15 7.89 -2.91 -0.02 2.12 16 43 H 0.15 1.61 8.03 -2.91 -0.02 1.59 16 Total: -1.00 -73.10 380.95 -0.29 -73.39 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -2.77 Total: 11.87 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.67 Total: -34.00 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.01 Total: -85.33 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.86 kcal Total: -73.10 -0.29 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824594034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.523 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds