Wall clock time and date at job start Tue Mar 31 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.64308 * 2 1 4 4 C 1.54327 * 110.71956 * 123.14073 * 2 1 3 5 5 N 1.47021 * 107.27104 * 140.73267 * 4 2 1 6 6 C 1.34782 * 125.64884 * 181.02335 * 5 4 2 7 7 O 1.21275 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00012 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.47047 * 179.97438 * 8 6 5 10 10 C 1.38306 * 119.92975 * 270.29820 * 9 8 6 11 11 C 1.38104 * 120.06267 * 180.29756 * 10 9 8 12 12 C 1.38874 * 119.93265 * 359.43007 * 11 10 9 13 13 O 1.35749 * 120.06890 * 180.29770 * 12 11 10 14 14 C 1.34834 * 117.00013 * 354.46142 * 13 12 11 15 15 H 1.07996 * 120.00021 * 5.05939 * 14 13 12 16 16 C 1.38654 * 119.99707 * 185.05824 * 14 13 12 17 17 N 1.31550 * 120.00182 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99577 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47118 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47416 * 119.99910 * 18 16 14 21 21 H 1.48499 * 109.47261 * 240.00285 * 18 16 14 22 22 C 1.38882 * 119.86301 * 0.27303 * 12 11 10 23 23 C 1.38094 * 119.92975 * 0.02562 * 22 12 11 24 24 C 1.47423 * 108.70309 * 1.28791 * 5 4 2 25 25 C 1.55130 * 104.72314 * 335.55216 * 24 5 4 26 26 H 1.09001 * 111.19388 * 279.19340 * 25 24 5 27 27 C 1.50696 * 110.93982 * 155.29125 * 25 24 5 28 28 O 1.20827 * 119.99908 * 247.96074 * 27 25 24 29 29 O 1.34233 * 120.00049 * 67.95427 * 27 25 24 30 30 H 1.09004 * 109.47085 * 298.31306 * 1 2 3 31 31 H 1.08996 * 109.47131 * 58.31154 * 1 2 3 32 32 H 1.08998 * 109.46969 * 178.31395 * 1 2 3 33 33 H 1.08998 * 109.88558 * 21.31598 * 4 2 1 34 34 H 1.09000 * 109.88446 * 260.14664 * 4 2 1 35 35 H 1.09007 * 109.47286 * 60.00136 * 8 6 5 36 36 H 1.08998 * 109.47397 * 300.00180 * 8 6 5 37 37 H 1.07990 * 119.96779 * 0.02562 * 10 9 8 38 38 H 1.08000 * 120.02708 * 179.69965 * 11 10 9 39 39 H 0.97006 * 119.99724 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.03486 * 180.02562 * 22 12 11 41 41 H 1.08006 * 119.96521 * 180.02562 * 23 22 12 42 42 H 1.08999 * 110.36861 * 94.48531 * 24 5 4 43 43 H 1.09001 * 110.36659 * 216.80548 * 24 5 4 44 44 H 0.96702 * 116.99484 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2470 -1.5461 0.7427 6 6 3.9957 -2.3768 1.4952 7 8 3.7217 -2.5488 2.6640 8 6 5.1732 -3.0917 0.8841 9 6 5.8364 -3.9514 1.9292 10 6 6.8481 -3.4275 2.7132 11 6 7.4620 -4.2148 3.6675 12 6 7.0543 -5.5301 3.8476 13 8 7.6516 -6.3045 4.7889 14 6 8.7093 -5.7750 5.4361 15 1 8.9947 -4.7492 5.2555 16 6 9.4307 -6.5475 6.3335 17 7 9.0828 -7.7969 6.5539 18 14 10.8956 -5.8137 7.2307 19 1 11.0762 -4.4008 6.8107 20 1 10.6569 -5.8674 8.6953 21 1 12.1180 -6.5891 6.8996 22 6 6.0338 -6.0513 3.0629 23 6 5.4281 -5.2609 2.1061 24 6 3.4706 -1.2413 -0.6822 25 6 2.0828 -0.7949 -1.2124 26 1 1.4514 -1.6547 -1.4366 27 6 2.2283 0.0943 -2.4203 28 8 1.9261 1.2621 -2.3508 29 8 2.6937 -0.4110 -3.5736 30 1 -0.3633 0.4874 0.9048 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0302 33 1 1.3140 -1.4754 1.5782 34 1 2.3712 -0.0992 1.9991 35 1 5.8883 -2.3594 0.5094 36 1 4.8304 -3.7189 0.0612 37 1 7.1614 -2.4032 2.5761 38 1 8.2553 -3.8066 4.2761 39 1 9.5877 -8.3375 7.1815 40 1 5.7143 -7.0737 3.2008 41 1 4.6342 -5.6656 1.4958 42 1 4.1970 -0.4356 -0.7884 43 1 3.8102 -2.1314 -1.2118 44 1 2.7691 0.1981 -4.3209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828341797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:49 Heat of formation + Delta-G solvation = -153.989625 kcal Electronic energy + Delta-G solvation = -27550.418158 eV Core-core repulsion = 23432.305660 eV Total energy + Delta-G solvation = -4118.112498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82435 -41.00238 -40.44381 -38.82212 -37.98503 -37.04858 -34.42366 -34.12424 -32.69135 -31.76542 -31.35107 -28.76686 -27.45478 -26.44422 -25.61157 -23.62570 -23.06853 -22.31051 -20.94358 -20.33019 -19.82549 -19.06373 -18.83015 -18.30951 -17.83522 -16.98726 -16.70585 -16.47375 -16.31645 -16.03088 -15.77050 -15.48013 -15.28354 -15.02312 -14.72528 -14.41073 -14.33357 -14.19515 -13.98113 -13.92657 -13.59952 -13.45315 -13.10896 -12.96764 -12.77825 -12.54636 -12.47025 -12.32070 -12.26133 -12.12086 -12.07360 -12.05971 -11.73809 -11.61648 -11.16882 -10.94973 -10.75230 -9.75565 -9.73195 -8.89390 -8.47098 -6.15076 0.62967 0.67136 1.14365 1.34255 1.42657 1.52966 1.66446 1.82040 2.17803 2.21358 2.83612 3.13094 3.18872 3.38261 3.52874 3.81804 3.84750 4.04465 4.05634 4.10003 4.17653 4.21199 4.41091 4.45235 4.48053 4.57012 4.61483 4.67493 4.72989 4.76599 4.82073 4.83901 4.99210 5.09059 5.13219 5.15580 5.28385 5.31393 5.32586 5.58035 5.63787 5.72766 5.78709 6.03668 6.23222 6.44898 6.97598 7.00677 7.20154 7.79197 8.76575 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.001981 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.144597 B =14128.160273 C =14229.043404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.091 0.909 4 C 0.107 3.893 5 N -0.622 5.622 6 C 0.527 3.473 7 O -0.576 6.576 8 C -0.073 4.073 9 C -0.147 4.147 10 C -0.060 4.060 11 C -0.245 4.245 12 C 0.112 3.888 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.253 1.253 20 H -0.269 1.269 21 H -0.265 1.265 22 C -0.206 4.206 23 C -0.055 4.055 24 C 0.111 3.889 25 C -0.093 4.093 26 H 0.144 0.856 27 C 0.502 3.498 28 O -0.541 6.541 29 O -0.506 6.506 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.380 17.465 -23.527 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.016 4.016 5 N -0.357 5.357 6 C 0.318 3.682 7 O -0.455 6.455 8 C -0.112 4.112 9 C -0.148 4.148 10 C -0.078 4.078 11 C -0.264 4.264 12 C 0.062 3.938 13 O -0.141 6.141 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.176 1.176 20 H -0.194 1.194 21 H -0.190 1.190 22 C -0.226 4.226 23 C -0.073 4.073 24 C -0.011 4.011 25 C -0.112 4.112 26 H 0.162 0.838 27 C 0.345 3.655 28 O -0.431 6.431 29 O -0.320 6.320 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -14.576 16.974 -22.323 31.605 hybrid contribution 0.648 0.437 0.576 0.971 sum -13.928 17.411 -21.748 31.147 Atomic orbital electron populations 1.21753 0.92132 1.03025 1.02912 1.22124 0.97790 0.99160 0.90795 0.89089 1.22093 0.87772 0.94627 0.97076 1.48509 1.30242 1.44899 1.12007 1.20938 0.83699 0.78101 0.85503 1.90766 1.71550 1.64430 1.18747 1.20540 0.94410 0.99058 0.97194 1.19252 0.99545 0.94648 1.01353 1.20923 0.94853 0.98775 0.93270 1.21216 1.05945 0.94500 1.04734 1.19955 0.93446 0.91250 0.89151 1.83938 1.42767 1.41742 1.45605 1.21852 1.05845 0.98640 1.22563 0.88289 1.26614 1.01999 0.95772 0.97829 1.70194 1.41433 1.08774 1.35555 0.84511 0.75443 0.78648 0.77455 1.17591 1.19411 1.19032 1.20452 1.00418 1.01202 1.00482 1.20882 0.97463 0.93273 0.95701 1.22447 0.95017 1.03588 0.80027 1.22359 0.99857 0.99267 0.89718 0.83814 1.22926 0.71895 0.86341 0.84384 1.90752 1.47679 1.19732 1.84978 1.84501 1.77092 1.48204 1.22214 0.91476 0.91875 0.91168 0.91215 0.92268 0.85552 0.84701 0.84586 0.86605 0.91839 0.86915 0.83320 0.89743 0.86058 0.70753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 71.98 0.66 -0.64 16 2 C -0.08 -0.89 2.66 -9.61 -0.03 -0.91 16 3 H 0.09 1.22 7.39 -2.39 -0.02 1.20 16 4 C 0.11 1.73 6.46 86.73 0.56 2.29 16 5 N -0.62 -10.43 3.32 -811.36 -2.70 -13.13 16 6 C 0.53 12.88 7.84 87.66 0.69 13.57 16 7 O -0.58 -21.06 16.36 -3.01 -0.05 -21.11 16 8 C -0.07 -1.42 4.83 29.10 0.14 -1.28 16 9 C -0.15 -4.65 4.38 -19.83 -0.09 -4.74 16 10 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 11 C -0.24 -11.33 9.17 22.39 0.21 -11.13 16 12 C 0.11 5.90 6.65 22.58 0.15 6.05 16 13 O -0.23 -14.68 9.76 -22.77 -0.22 -14.91 16 14 C -0.41 -24.97 9.49 67.92 0.64 -24.33 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 16 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 17 N -0.92 -57.98 13.67 21.61 0.30 -57.69 16 18 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 C -0.21 -9.26 9.99 22.39 0.22 -9.04 16 23 C -0.06 -1.92 9.69 22.25 0.22 -1.71 16 24 C 0.11 0.94 6.15 86.93 0.53 1.47 16 25 C -0.09 -0.72 3.01 -10.07 -0.03 -0.76 16 26 H 0.14 0.65 8.05 -2.39 -0.02 0.63 16 27 C 0.50 4.71 7.65 71.23 0.54 5.25 16 28 O -0.54 -8.85 16.47 21.96 0.36 -8.49 16 29 O -0.51 -2.28 13.42 -51.44 -0.69 -2.97 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.53 8.13 -2.39 -0.02 0.51 16 33 H 0.07 1.21 7.82 -2.39 -0.02 1.19 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.13 1.73 8.09 -2.38 -0.02 1.71 16 36 H 0.14 1.63 7.80 -2.39 -0.02 1.62 16 37 H 0.14 4.02 8.06 -2.92 -0.02 4.00 16 38 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 39 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 40 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.08 0.63 8.04 -2.39 -0.02 0.61 16 43 H 0.12 0.44 7.48 -2.39 -0.02 0.42 16 44 H 0.43 -1.17 9.10 -74.06 -0.67 -1.85 16 Total: -1.00 -88.51 375.82 4.49 -84.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.37 Total: 16.97 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 5.10 Total: -28.88 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -2.40 Total: -70.82 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.60 Total: -47.48 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -88.51 4.49 -84.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828341797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.974 kcal (2) G-P(sol) polarization free energy of solvation -88.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds