Wall clock time and date at job start Tue Mar 31 2020 18:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88961 * 2 1 4 4 C 1.55132 * 111.22278 * 236.09042 * 2 1 3 5 5 N 1.47426 * 104.71948 * 279.17644 * 4 2 1 6 6 C 1.34788 * 125.64751 * 155.81815 * 5 4 2 7 7 O 1.21282 * 119.99317 * 359.71768 * 6 5 4 8 8 C 1.50694 * 120.00044 * 179.71684 * 6 5 4 9 9 C 1.50700 * 109.47079 * 180.02562 * 8 6 5 10 10 C 1.38302 * 119.92869 * 270.31916 * 9 8 6 11 11 C 1.38098 * 120.06453 * 180.27542 * 10 9 8 12 12 C 1.38883 * 119.93345 * 359.42758 * 11 10 9 13 13 O 1.35751 * 120.07117 * 180.25127 * 12 11 10 14 14 C 1.34826 * 116.99678 * 354.29125 * 13 12 11 15 15 H 1.07996 * 120.00259 * 354.58440 * 14 13 12 16 16 C 1.38658 * 119.99541 * 174.57571 * 14 13 12 17 17 N 1.31557 * 119.99846 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00180 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47395 * 89.99422 * 18 16 14 20 20 H 1.48498 * 109.47067 * 209.99812 * 18 16 14 21 21 H 1.48499 * 109.46812 * 329.99416 * 18 16 14 22 22 C 1.38881 * 119.85863 * 0.27540 * 12 11 10 23 23 C 1.38105 * 119.93257 * 359.97438 * 22 12 11 24 24 C 1.47018 * 108.70455 * 335.55625 * 5 4 2 25 25 C 1.54323 * 107.27251 * 1.28426 * 24 5 4 26 26 H 1.09002 * 110.71781 * 263.83267 * 25 24 5 27 27 C 1.50697 * 110.72141 * 140.73665 * 25 24 5 28 28 O 1.20833 * 119.99745 * 335.01739 * 27 25 24 29 29 O 1.34224 * 120.00090 * 155.01521 * 27 25 24 30 30 H 1.08997 * 109.47168 * 301.19112 * 1 2 3 31 31 H 1.09008 * 109.47259 * 61.18600 * 1 2 3 32 32 H 1.08993 * 109.47564 * 181.19073 * 1 2 3 33 33 H 1.08995 * 110.49675 * 160.33735 * 4 2 1 34 34 H 1.08995 * 110.34799 * 37.94068 * 4 2 1 35 35 H 1.08996 * 109.47463 * 59.99675 * 8 6 5 36 36 H 1.08998 * 109.46994 * 300.00088 * 8 6 5 37 37 H 1.07994 * 119.96704 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.03723 * 179.69988 * 11 10 9 39 39 H 0.97000 * 119.99870 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03470 * 180.02562 * 22 12 11 41 41 H 1.07993 * 119.96427 * 179.97438 * 23 22 12 42 42 H 1.09000 * 109.88501 * 120.70456 * 24 5 4 43 43 H 1.09003 * 109.88138 * 241.87004 * 24 5 4 44 44 H 0.96701 * 116.99789 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0915 -0.8068 -1.2002 5 7 2.0152 -2.2157 -0.7730 6 6 1.9492 -3.2829 -1.5936 7 8 1.9444 -3.1238 -2.7960 8 6 1.8813 -4.6736 -1.0173 9 6 1.8159 -5.6792 -2.1378 10 6 0.5894 -6.0710 -2.6426 11 6 0.5260 -6.9965 -3.6656 12 6 1.6959 -7.5250 -4.1955 13 8 1.6370 -8.4312 -5.2046 14 6 0.4129 -8.8648 -5.5670 15 1 -0.4568 -8.5593 -5.0044 16 6 0.2706 -9.7030 -6.6624 17 7 -0.9238 -10.1258 -7.0164 18 14 1.7750 -10.2319 -7.6355 19 1 2.3212 -11.4868 -7.0593 20 1 1.3925 -10.4627 -9.0516 21 1 2.8072 -9.1664 -7.5690 22 6 2.9262 -7.1249 -3.6905 23 6 2.9828 -6.2028 -2.6639 24 6 2.0293 -2.2643 0.6963 25 6 2.0861 -0.8075 1.2025 26 1 3.1131 -0.5152 1.4215 27 6 1.2128 -0.6309 2.4178 28 8 0.2758 -1.3715 2.6013 29 8 1.4757 0.3491 3.2965 30 1 -0.3633 0.5322 0.8791 31 1 -0.3634 0.4953 -0.9005 32 1 -0.3634 -1.0273 0.0214 33 1 3.1259 -0.5260 -1.3982 34 1 1.4775 -0.6452 -2.0860 35 1 0.9921 -4.7656 -0.3937 36 1 2.7693 -4.8603 -0.4134 37 1 -0.3198 -5.6558 -2.2337 38 1 -0.4323 -7.3058 -4.0562 39 1 -1.0233 -10.7124 -7.7825 40 1 3.8378 -7.5337 -4.1008 41 1 3.9392 -5.8916 -2.2706 42 1 1.1227 -2.7480 1.0600 43 1 2.9073 -2.8109 1.0407 44 1 0.8874 0.4232 4.0604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828341798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:54 Heat of formation + Delta-G solvation = -124.910843 kcal Electronic energy + Delta-G solvation = -27834.106481 eV Core-core repulsion = 23717.254934 eV Total energy + Delta-G solvation = -4116.851547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38130 -39.96335 -39.05978 -37.88156 -36.62356 -36.44200 -33.24899 -32.44169 -31.44348 -30.54916 -30.18093 -27.78224 -26.37156 -25.32174 -24.64898 -22.34962 -22.02913 -20.72786 -20.41413 -19.32464 -18.62978 -17.84657 -17.41722 -17.19973 -17.16142 -16.25756 -15.91218 -15.51271 -14.99515 -14.55516 -14.42286 -14.11445 -14.00511 -13.88078 -13.71385 -13.50694 -13.33020 -13.03127 -12.81015 -12.65538 -12.61365 -12.36972 -12.16629 -12.04531 -11.85665 -11.61176 -11.50940 -11.36033 -11.25026 -10.96376 -10.88830 -10.73555 -10.58383 -10.11940 -9.78601 -9.35832 -8.84666 -8.81638 -8.17918 -7.25867 -6.37459 -4.03567 1.62988 2.15768 2.21470 2.35292 2.69587 2.94326 3.26477 3.28395 3.44327 3.76788 3.79490 4.27816 4.30441 4.46602 4.53241 4.66396 4.73670 4.87332 4.91493 4.95383 5.12271 5.14765 5.17899 5.21917 5.32375 5.36762 5.42490 5.46652 5.50813 5.64309 5.72086 5.80293 5.81508 5.96563 6.06013 6.19167 6.38807 6.61798 6.85067 7.07559 7.27494 7.30942 7.36313 7.36997 7.66803 7.84905 8.08653 8.20321 8.98009 9.61216 10.70308 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.002083 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.794742 B =13442.002377 C =13535.027962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.103 0.897 4 C 0.110 3.890 5 N -0.626 5.626 6 C 0.529 3.471 7 O -0.515 6.515 8 C -0.078 4.078 9 C -0.163 4.163 10 C -0.057 4.057 11 C -0.219 4.219 12 C 0.162 3.838 13 O -0.218 6.218 14 C -0.387 4.387 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.191 4.191 23 C -0.061 4.061 24 C 0.111 3.889 25 C -0.096 4.096 26 H 0.120 0.880 27 C 0.492 3.508 28 O -0.504 6.504 29 O -0.515 6.515 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 22.212 21.082 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.388 6.388 8 C -0.117 4.117 9 C -0.164 4.164 10 C -0.075 4.075 11 C -0.238 4.238 12 C 0.110 3.890 13 O -0.123 6.123 14 C -0.463 4.463 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.211 4.211 23 C -0.079 4.079 24 C -0.012 4.012 25 C -0.115 4.115 26 H 0.138 0.862 27 C 0.334 3.666 28 O -0.392 6.392 29 O -0.327 6.327 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.039 21.707 19.746 30.177 hybrid contribution -0.033 -0.103 0.206 0.233 sum 7.006 21.604 19.953 30.231 Atomic orbital electron populations 1.21861 0.93243 1.03384 1.02286 1.22430 0.97174 0.99282 0.91957 0.87893 1.22320 1.01305 0.80383 0.97245 1.48524 1.75626 1.06310 1.05948 1.20740 0.75477 0.85576 0.86316 1.90766 1.47959 1.85709 1.14383 1.20426 1.04000 0.89525 0.97776 1.18709 0.93781 1.02354 1.01552 1.20570 0.96095 0.95572 0.95303 1.21227 0.99059 1.02378 1.01128 1.19139 0.93420 0.88286 0.88147 1.83583 1.32689 1.50716 1.45315 1.20770 0.82802 1.28692 1.14045 0.87665 1.24477 0.97704 0.95929 0.95983 1.69651 1.21604 1.33331 1.27267 0.86172 0.82434 0.79753 0.78503 1.19883 1.20858 1.18352 1.20141 0.95613 1.04000 1.01312 1.20390 0.96597 0.95603 0.95344 1.21926 1.03948 0.94175 0.81198 1.22067 1.00500 0.98129 0.90854 0.86176 1.22896 0.83511 0.77024 0.83190 1.90764 1.29530 1.44071 1.74786 1.84521 1.59102 1.52366 1.36677 0.92635 0.91314 0.91337 0.90878 0.89507 0.88786 0.88898 0.87530 0.84951 0.91106 0.86541 0.87216 0.89108 0.90244 0.72820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.17 37.16 0.30 -0.77 16 2 C -0.09 -0.52 3.53 -88.35 -0.31 -0.83 16 3 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 4 C 0.11 0.91 6.39 -2.41 -0.02 0.89 16 5 N -0.63 -6.34 3.31 -170.38 -0.56 -6.90 16 6 C 0.53 7.40 7.84 -10.98 -0.09 7.31 16 7 O -0.51 -9.65 16.29 5.56 0.09 -9.56 16 8 C -0.08 -0.99 5.02 -29.04 -0.15 -1.13 16 9 C -0.16 -2.82 4.38 -104.58 -0.46 -3.28 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 11 C -0.22 -4.97 9.13 -39.39 -0.36 -5.33 16 12 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16 13 O -0.22 -5.95 8.59 0.05 0.00 -5.95 16 14 C -0.39 -11.21 9.90 30.89 0.31 -10.91 16 15 H 0.11 3.11 5.53 -52.49 -0.29 2.82 16 16 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 17 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 18 Si 0.91 22.20 28.62 -169.99 -4.86 17.34 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.19 -3.98 9.99 -39.39 -0.39 -4.37 16 23 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 24 C 0.11 0.80 5.66 -3.07 -0.02 0.79 16 25 C -0.10 -0.52 3.30 -89.94 -0.30 -0.82 16 26 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 27 C 0.49 3.17 6.01 36.00 0.22 3.39 16 28 O -0.50 -4.82 15.83 -18.76 -0.30 -5.12 16 29 O -0.51 -2.19 13.42 -39.24 -0.53 -2.71 16 30 H 0.05 0.37 7.28 -51.93 -0.38 0.00 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.13 3.14 5.71 -52.49 -0.30 2.84 16 39 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.09 0.76 6.79 -51.93 -0.35 0.41 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.41 0.22 9.10 45.56 0.41 0.63 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -36.06 371.69 -7.25 -43.31 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.08 Total: 1.82 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.38 Total: -12.68 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.21 Total: -32.05 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.73 Total: -23.33 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.06 -7.25 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828341798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.605 kcal (2) G-P(sol) polarization free energy of solvation -36.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds