Wall clock time and date at job start Tue Mar 31 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88961 * 2 1 4 4 C 1.55132 * 111.22278 * 236.09042 * 2 1 3 5 5 N 1.47426 * 104.71948 * 279.17644 * 4 2 1 6 6 C 1.34788 * 125.64751 * 155.81815 * 5 4 2 7 7 O 1.21282 * 119.99317 * 359.71768 * 6 5 4 8 8 C 1.50694 * 120.00044 * 179.71684 * 6 5 4 9 9 C 1.50700 * 109.47079 * 180.02562 * 8 6 5 10 10 C 1.38302 * 119.92869 * 270.31916 * 9 8 6 11 11 C 1.38098 * 120.06453 * 180.27542 * 10 9 8 12 12 C 1.38883 * 119.93345 * 359.42758 * 11 10 9 13 13 O 1.35751 * 120.07117 * 180.25127 * 12 11 10 14 14 C 1.34826 * 116.99678 * 354.29125 * 13 12 11 15 15 H 1.07996 * 120.00259 * 354.58440 * 14 13 12 16 16 C 1.38658 * 119.99541 * 174.57571 * 14 13 12 17 17 N 1.31557 * 119.99846 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00180 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47395 * 89.99422 * 18 16 14 20 20 H 1.48498 * 109.47067 * 209.99812 * 18 16 14 21 21 H 1.48499 * 109.46812 * 329.99416 * 18 16 14 22 22 C 1.38881 * 119.85863 * 0.27540 * 12 11 10 23 23 C 1.38105 * 119.93257 * 359.97438 * 22 12 11 24 24 C 1.47018 * 108.70455 * 335.55625 * 5 4 2 25 25 C 1.54323 * 107.27251 * 1.28426 * 24 5 4 26 26 H 1.09002 * 110.71781 * 263.83267 * 25 24 5 27 27 C 1.50697 * 110.72141 * 140.73665 * 25 24 5 28 28 O 1.20833 * 119.99745 * 335.01739 * 27 25 24 29 29 O 1.34224 * 120.00090 * 155.01521 * 27 25 24 30 30 H 1.08997 * 109.47168 * 301.19112 * 1 2 3 31 31 H 1.09008 * 109.47259 * 61.18600 * 1 2 3 32 32 H 1.08993 * 109.47564 * 181.19073 * 1 2 3 33 33 H 1.08995 * 110.49675 * 160.33735 * 4 2 1 34 34 H 1.08995 * 110.34799 * 37.94068 * 4 2 1 35 35 H 1.08996 * 109.47463 * 59.99675 * 8 6 5 36 36 H 1.08998 * 109.46994 * 300.00088 * 8 6 5 37 37 H 1.07994 * 119.96704 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.03723 * 179.69988 * 11 10 9 39 39 H 0.97000 * 119.99870 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03470 * 180.02562 * 22 12 11 41 41 H 1.07993 * 119.96427 * 179.97438 * 23 22 12 42 42 H 1.09000 * 109.88501 * 120.70456 * 24 5 4 43 43 H 1.09003 * 109.88138 * 241.87004 * 24 5 4 44 44 H 0.96701 * 116.99789 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0915 -0.8068 -1.2002 5 7 2.0152 -2.2157 -0.7730 6 6 1.9492 -3.2829 -1.5936 7 8 1.9444 -3.1238 -2.7960 8 6 1.8813 -4.6736 -1.0173 9 6 1.8159 -5.6792 -2.1378 10 6 0.5894 -6.0710 -2.6426 11 6 0.5260 -6.9965 -3.6656 12 6 1.6959 -7.5250 -4.1955 13 8 1.6370 -8.4312 -5.2046 14 6 0.4129 -8.8648 -5.5670 15 1 -0.4568 -8.5593 -5.0044 16 6 0.2706 -9.7030 -6.6624 17 7 -0.9238 -10.1258 -7.0164 18 14 1.7750 -10.2319 -7.6355 19 1 2.3212 -11.4868 -7.0593 20 1 1.3925 -10.4627 -9.0516 21 1 2.8072 -9.1664 -7.5690 22 6 2.9262 -7.1249 -3.6905 23 6 2.9828 -6.2028 -2.6639 24 6 2.0293 -2.2643 0.6963 25 6 2.0861 -0.8075 1.2025 26 1 3.1131 -0.5152 1.4215 27 6 1.2128 -0.6309 2.4178 28 8 0.2758 -1.3715 2.6013 29 8 1.4757 0.3491 3.2965 30 1 -0.3633 0.5322 0.8791 31 1 -0.3634 0.4953 -0.9005 32 1 -0.3634 -1.0273 0.0214 33 1 3.1259 -0.5260 -1.3982 34 1 1.4775 -0.6452 -2.0860 35 1 0.9921 -4.7656 -0.3937 36 1 2.7693 -4.8603 -0.4134 37 1 -0.3198 -5.6558 -2.2337 38 1 -0.4323 -7.3058 -4.0562 39 1 -1.0233 -10.7124 -7.7825 40 1 3.8378 -7.5337 -4.1008 41 1 3.9392 -5.8916 -2.2706 42 1 1.1227 -2.7480 1.0600 43 1 2.9073 -2.8109 1.0407 44 1 0.8874 0.4232 4.0604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828341798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:53 Heat of formation + Delta-G solvation = -149.909811 kcal Electronic energy + Delta-G solvation = -27835.190518 eV Core-core repulsion = 23717.254934 eV Total energy + Delta-G solvation = -4117.935584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95791 -41.06969 -40.50034 -38.88726 -38.06629 -37.01206 -34.53709 -34.05606 -32.80647 -31.81861 -31.10950 -28.94458 -27.60467 -26.61560 -25.72006 -23.71830 -23.05962 -22.12150 -20.94549 -20.27505 -19.80785 -19.09451 -19.06803 -18.24557 -17.75143 -16.92919 -16.71137 -16.65255 -16.53020 -15.85420 -15.83874 -15.66153 -15.30265 -15.05423 -14.65969 -14.57185 -14.35313 -14.22510 -14.10813 -14.07227 -13.61548 -13.40279 -13.26833 -13.02713 -12.85052 -12.56121 -12.50878 -12.41335 -12.37573 -12.32862 -11.98778 -11.94780 -11.85512 -11.48001 -11.31602 -10.99255 -10.84609 -9.80093 -9.66644 -8.99882 -8.51186 -6.23691 0.57395 0.59670 1.16760 1.29806 1.34946 1.51007 1.65466 1.79349 2.24992 2.27471 2.75539 3.07305 3.12212 3.26729 3.29515 3.80193 3.85543 3.98675 4.02056 4.03406 4.15620 4.21091 4.37474 4.42341 4.49029 4.55177 4.59932 4.67335 4.68793 4.78256 4.82837 4.85676 4.89643 4.96539 4.96690 5.20461 5.23879 5.33692 5.38606 5.55197 5.65110 5.72596 5.78042 5.89841 6.22815 6.44346 6.82884 7.01325 7.19458 7.57410 8.60680 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.002083 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.794742 B =13442.002377 C =13535.027962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.134 0.866 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.528 3.472 7 O -0.576 6.576 8 C -0.076 4.076 9 C -0.138 4.138 10 C -0.066 4.066 11 C -0.238 4.238 12 C 0.119 3.881 13 O -0.245 6.245 14 C -0.399 4.399 15 H 0.078 0.922 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.056 4.056 24 C 0.104 3.896 25 C -0.090 4.090 26 H 0.153 0.847 27 C 0.499 3.501 28 O -0.542 6.542 29 O -0.508 6.508 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.285 0.715 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 24.750 24.086 36.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.152 0.848 4 C -0.019 4.019 5 N -0.354 5.354 6 C 0.318 3.682 7 O -0.454 6.454 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.257 4.257 12 C 0.070 3.930 13 O -0.153 6.153 14 C -0.476 4.476 15 H 0.095 0.905 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.796 3.204 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.211 4.211 23 C -0.074 4.074 24 C -0.019 4.019 25 C -0.109 4.109 26 H 0.171 0.829 27 C 0.341 3.659 28 O -0.432 6.432 29 O -0.322 6.322 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.174 0.826 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 10.236 24.314 22.856 34.905 hybrid contribution -1.023 -0.554 -0.356 1.216 sum 9.213 23.760 22.501 33.996 Atomic orbital electron populations 1.21837 0.94667 1.01714 1.02508 1.22409 0.95850 1.00549 0.90940 0.84835 1.22504 1.02141 0.79676 0.97549 1.48461 1.73411 1.06333 1.07184 1.20753 0.75056 0.86647 0.85730 1.90759 1.51259 1.86624 1.16802 1.20532 1.07154 0.87530 0.96344 1.19277 0.92598 1.01055 1.01012 1.20873 0.98344 0.94748 0.94465 1.21228 0.97817 1.03937 1.02728 1.19692 0.95294 0.89391 0.88646 1.83517 1.31235 1.53030 1.47469 1.20693 0.83075 1.29444 1.14348 0.90474 1.25328 1.00826 0.95968 0.96937 1.69736 1.23485 1.34782 1.28440 0.85177 0.78357 0.79273 0.77637 1.18618 1.19150 1.19002 1.20517 0.94732 1.04151 1.01673 1.20937 0.98823 0.93840 0.93829 1.22159 1.04726 0.95973 0.79029 1.22110 1.01998 0.96703 0.90079 0.82915 1.23009 0.82769 0.76645 0.83429 1.90767 1.31129 1.45573 1.75730 1.84482 1.59379 1.51232 1.37072 0.92159 0.91365 0.93951 0.89067 0.91778 0.86650 0.84706 0.85492 0.87677 0.90548 0.85108 0.82646 0.90249 0.87419 0.70911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.17 71.98 0.59 -1.31 16 2 C -0.08 -0.64 3.53 -9.32 -0.03 -0.68 16 3 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 4 C 0.10 1.44 6.39 86.93 0.56 1.99 16 5 N -0.62 -10.66 3.31 -811.35 -2.69 -13.34 16 6 C 0.53 13.40 7.84 87.65 0.69 14.09 16 7 O -0.58 -21.03 16.29 -3.04 -0.05 -21.08 16 8 C -0.08 -1.65 5.02 29.10 0.15 -1.50 16 9 C -0.14 -4.46 4.38 -19.83 -0.09 -4.55 16 10 C -0.07 -2.55 9.69 22.25 0.22 -2.34 16 11 C -0.24 -11.42 9.13 22.39 0.20 -11.22 16 12 C 0.12 5.96 6.65 22.58 0.15 6.11 16 13 O -0.24 -14.05 8.59 -22.72 -0.20 -14.24 16 14 C -0.40 -24.69 9.90 67.92 0.67 -24.02 16 15 H 0.08 5.02 5.53 -2.91 -0.02 5.00 16 16 C 0.01 0.45 5.49 84.83 0.47 0.92 16 17 N -0.92 -57.01 13.96 21.61 0.30 -56.71 16 18 Si 0.97 47.19 28.62 68.60 1.96 49.16 16 19 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 22 C -0.19 -7.84 9.99 22.39 0.22 -7.61 16 23 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16 24 C 0.10 1.09 5.66 86.73 0.49 1.58 16 25 C -0.09 -0.60 3.30 -10.35 -0.03 -0.63 16 26 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 27 C 0.50 4.77 6.01 71.23 0.43 5.20 16 28 O -0.54 -9.26 15.83 21.94 0.35 -8.92 16 29 O -0.51 -2.42 13.42 -51.36 -0.69 -3.10 16 30 H 0.06 0.70 7.28 -2.39 -0.02 0.68 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.04 0.76 7.77 -2.39 -0.02 0.74 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 35 H 0.12 2.08 8.09 -2.39 -0.02 2.06 16 36 H 0.14 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.11 5.53 5.71 -2.91 -0.02 5.51 16 39 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 41 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.08 1.09 6.79 -2.39 -0.02 1.08 16 43 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.43 -0.92 9.10 -74.06 -0.67 -1.59 16 Total: -1.00 -85.57 371.69 4.25 -81.32 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.37 Total: 12.52 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.89 Total: -25.60 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -2.39 Total: -70.05 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.59 Total: -47.35 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.16 kcal Total: -85.57 4.25 -81.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828341798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.590 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds