Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.65899 * 2 1 4 4 C 1.54595 * 110.57909 * 123.39465 * 2 1 3 5 5 N 1.48124 * 103.42166 * 81.17007 * 4 2 1 6 6 C 1.34767 * 127.03216 * 219.28957 * 5 4 2 7 7 O 1.21281 * 120.00348 * 359.70804 * 6 5 4 8 8 C 1.50704 * 119.99748 * 179.70906 * 6 5 4 9 9 C 1.50699 * 109.47027 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93030 * 89.99900 * 9 8 6 11 11 C 1.38103 * 120.06954 * 179.97438 * 10 9 8 12 12 C 1.38880 * 119.92816 * 0.28339 * 11 10 9 13 13 O 1.35757 * 120.06861 * 179.72173 * 12 11 10 14 14 C 1.34830 * 116.99642 * 5.63427 * 13 12 11 15 15 H 1.07997 * 120.00554 * 354.94117 * 14 13 12 16 16 C 1.38659 * 119.99716 * 174.93378 * 14 13 12 17 17 N 1.31557 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99784 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47546 * 90.00343 * 18 16 14 20 20 H 1.48506 * 109.46783 * 210.00233 * 18 16 14 21 21 H 1.48500 * 109.47185 * 329.99665 * 18 16 14 22 22 C 1.38878 * 119.86183 * 359.46293 * 12 11 10 23 23 C 1.38094 * 119.93150 * 0.53453 * 22 12 11 24 24 C 1.47486 * 105.93056 * 39.02366 * 5 4 2 25 25 C 1.54005 * 107.08590 * 334.77956 * 24 5 4 26 26 H 1.09006 * 110.32690 * 120.19798 * 25 24 5 27 27 C 1.50702 * 110.32776 * 242.31006 * 25 24 5 28 28 O 1.20819 * 119.99709 * 25.10270 * 27 25 24 29 29 O 1.34226 * 119.99833 * 205.10044 * 27 25 24 30 30 H 1.09002 * 109.47025 * 187.76110 * 1 2 3 31 31 H 1.09008 * 109.46987 * 307.75736 * 1 2 3 32 32 H 1.08999 * 109.47734 * 67.76056 * 1 2 3 33 33 H 1.08993 * 110.61622 * 322.65874 * 4 2 1 34 34 H 1.08998 * 110.54948 * 199.64657 * 4 2 1 35 35 H 1.08999 * 109.47081 * 60.00133 * 8 6 5 36 36 H 1.08999 * 109.47254 * 299.99591 * 8 6 5 37 37 H 1.08004 * 119.97015 * 0.02562 * 10 9 8 38 38 H 1.07999 * 120.03342 * 180.02562 * 11 10 9 39 39 H 0.96999 * 119.99882 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.03349 * 180.26116 * 22 12 11 41 41 H 1.08004 * 119.96572 * 179.74719 * 23 22 12 42 42 H 1.09004 * 109.90985 * 94.13834 * 24 5 4 43 43 H 1.09000 * 109.91723 * 215.41931 * 24 5 4 44 44 H 0.96695 * 116.99795 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0733 -0.7966 1.2083 5 7 1.9871 -2.2052 0.7584 6 6 1.6221 -3.2721 1.4964 7 8 1.3249 -3.1292 2.6635 8 6 1.5833 -4.6429 0.8714 9 6 1.1477 -5.6526 1.9018 10 6 -0.1956 -5.9402 2.0614 11 6 -0.5979 -6.8654 3.0045 12 6 0.3477 -7.5030 3.7970 13 8 -0.0450 -8.4088 4.7288 14 6 -1.3540 -8.7310 4.7556 15 1 -2.0506 -8.2147 4.1117 16 6 -1.8058 -9.7254 5.6098 17 7 -0.9574 -10.3541 6.3944 18 14 -3.6192 -10.1723 5.6464 19 1 -3.8842 -11.2473 4.6568 20 1 -3.9841 -10.6490 7.0047 21 1 -4.4308 -8.9759 5.3071 22 6 1.6963 -7.2159 3.6307 23 6 2.0922 -6.2898 2.6859 24 6 2.3762 -2.2002 -0.6642 25 6 2.0774 -0.7915 -1.2101 26 1 2.9909 -0.3285 -1.5835 27 6 1.0428 -0.8624 -2.3036 28 8 0.2610 -1.7830 -2.3367 29 8 0.9897 0.0973 -3.2405 30 1 -0.3633 -1.0183 0.1388 31 1 -0.3633 0.6293 0.8125 32 1 -0.3634 0.3889 -0.9512 33 1 1.4489 -0.6346 2.0869 34 1 3.1077 -0.5213 1.4142 35 1 2.5762 -4.9034 0.5050 36 1 0.8776 -4.6436 0.0406 37 1 -0.9308 -5.4413 1.4474 38 1 -1.6470 -7.0898 3.1283 39 1 -1.2735 -11.0494 6.9923 40 1 2.4343 -7.7132 4.2426 41 1 3.1405 -6.0632 2.5589 42 1 3.4403 -2.4171 -0.7588 43 1 1.7935 -2.9415 -1.2111 44 1 0.3088 0.0090 -3.9213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828341799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -150.684571 kcal Electronic energy + Delta-G solvation = -28030.726112 eV Core-core repulsion = 23912.756932 eV Total energy + Delta-G solvation = -4117.969180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99101 -40.99693 -40.39759 -38.80593 -37.98996 -37.00104 -34.43054 -34.00862 -32.67970 -31.80224 -31.16769 -28.83211 -27.55486 -26.64905 -25.74439 -23.65707 -23.17390 -22.21598 -20.84719 -20.27897 -19.84024 -19.07078 -18.83768 -18.25645 -17.67985 -16.99933 -16.66966 -16.63854 -16.41035 -16.15087 -15.77511 -15.48960 -15.27105 -15.03997 -14.58873 -14.48225 -14.40737 -14.15647 -14.06544 -13.75666 -13.61136 -13.26824 -13.10573 -12.96262 -12.84602 -12.51106 -12.47859 -12.38270 -12.33337 -12.28735 -12.13166 -12.02389 -11.86366 -11.42399 -11.20367 -10.95590 -10.75705 -9.78916 -9.70634 -8.92336 -8.48350 -6.16569 0.59174 0.64216 1.19923 1.32877 1.42473 1.50817 1.66493 1.88166 2.16868 2.19849 2.81464 3.13650 3.31684 3.37604 3.50072 3.81970 3.85350 4.00765 4.03491 4.07526 4.17254 4.26822 4.39757 4.42202 4.46380 4.56345 4.61339 4.65286 4.70268 4.77912 4.83327 4.85755 4.86900 4.97584 5.05944 5.12990 5.17695 5.27582 5.37922 5.54634 5.66038 5.69478 5.75684 6.01615 6.19583 6.49256 6.95988 7.01841 7.20857 7.76753 8.75046 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002244 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.903986 B =12476.150887 C =12928.561720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.138 0.862 4 C 0.100 3.900 5 N -0.623 5.623 6 C 0.531 3.469 7 O -0.578 6.578 8 C -0.074 4.074 9 C -0.146 4.146 10 C -0.063 4.063 11 C -0.243 4.243 12 C 0.113 3.887 13 O -0.232 6.232 14 C -0.416 4.416 15 H 0.098 0.902 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.256 1.256 22 C -0.203 4.203 23 C -0.055 4.055 24 C 0.102 3.898 25 C -0.091 4.091 26 H 0.161 0.839 27 C 0.492 3.508 28 O -0.547 6.547 29 O -0.509 6.509 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 25.303 -22.929 35.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.156 0.844 4 C -0.022 4.022 5 N -0.358 5.358 6 C 0.322 3.678 7 O -0.457 6.457 8 C -0.113 4.113 9 C -0.147 4.147 10 C -0.081 4.081 11 C -0.262 4.262 12 C 0.063 3.937 13 O -0.138 6.138 14 C -0.492 4.492 15 H 0.116 0.884 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.839 3.161 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.180 1.180 22 C -0.223 4.223 23 C -0.072 4.072 24 C -0.021 4.021 25 C -0.110 4.110 26 H 0.179 0.821 27 C 0.336 3.664 28 O -0.437 6.437 29 O -0.323 6.323 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.168 0.832 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 8.780 24.809 -21.652 34.079 hybrid contribution -1.638 -0.722 0.126 1.794 sum 7.142 24.087 -21.526 33.084 Atomic orbital electron populations 1.21919 0.95526 1.01258 1.02278 1.22249 0.95405 1.00891 0.91392 0.84383 1.22660 1.02660 0.79491 0.97342 1.48792 1.67306 1.07505 1.12170 1.20704 0.75263 0.86296 0.85567 1.90749 1.50006 1.86170 1.18767 1.20479 1.05852 0.88081 0.96898 1.19223 0.92811 1.01170 1.01507 1.20876 0.96151 0.94984 0.96077 1.21193 0.99432 1.03613 1.01991 1.19929 0.94627 0.90117 0.88999 1.83938 1.28263 1.53311 1.48320 1.21811 0.81467 1.20666 1.25218 0.88436 1.26610 1.05805 0.94861 0.94770 1.70185 1.37338 1.24303 1.24012 0.84578 0.73707 0.79264 0.78568 1.18522 1.19331 1.17992 1.20452 0.92400 1.05051 1.04361 1.20862 1.00063 0.93390 0.92934 1.22347 1.02937 0.96372 0.80424 1.22157 0.98954 0.98175 0.91760 0.82128 1.23328 0.83521 0.78243 0.81307 1.90770 1.42091 1.36055 1.74794 1.84493 1.58933 1.49442 1.39419 0.94913 0.91197 0.92273 0.91641 0.87770 0.85108 0.86934 0.85279 0.86563 0.91775 0.86589 0.83238 0.86558 0.89776 0.71185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.22 71.98 0.59 -1.60 16 2 C -0.08 -0.68 3.60 -9.70 -0.03 -0.72 16 3 H 0.14 0.29 8.14 -2.38 -0.02 0.28 16 4 C 0.10 1.40 6.50 86.61 0.56 1.96 16 5 N -0.62 -11.39 3.15 -810.08 -2.56 -13.95 16 6 C 0.53 14.58 7.88 87.66 0.69 15.27 16 7 O -0.58 -22.31 16.24 -3.03 -0.05 -22.36 16 8 C -0.07 -1.79 4.91 29.10 0.14 -1.64 16 9 C -0.15 -5.11 4.38 -19.83 -0.09 -5.19 16 10 C -0.06 -2.50 9.69 22.25 0.22 -2.28 16 11 C -0.24 -11.80 9.17 22.39 0.21 -11.59 16 12 C 0.11 6.14 6.65 22.58 0.15 6.29 16 13 O -0.23 -14.80 9.76 -22.81 -0.22 -15.03 16 14 C -0.42 -25.60 9.49 67.92 0.64 -24.95 16 15 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 16 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 17 N -0.92 -58.47 13.67 21.61 0.30 -58.18 16 18 Si 1.02 44.87 29.55 68.60 2.03 46.90 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 22 C -0.20 -9.43 9.99 22.39 0.22 -9.21 16 23 C -0.05 -2.02 9.69 22.25 0.22 -1.80 16 24 C 0.10 1.04 6.29 86.53 0.54 1.59 16 25 C -0.09 -0.61 3.43 -10.65 -0.04 -0.65 16 26 H 0.16 -0.13 8.14 -2.38 -0.02 -0.15 16 27 C 0.49 5.48 5.27 71.24 0.38 5.86 16 28 O -0.55 -10.68 15.97 21.99 0.35 -10.33 16 29 O -0.51 -3.11 13.42 -51.37 -0.69 -3.80 16 30 H 0.03 0.70 7.91 -2.39 -0.02 0.68 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.77 6.80 -2.39 -0.02 0.76 16 33 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16 36 H 0.11 2.38 7.86 -2.39 -0.02 2.36 16 37 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.12 5.72 5.64 -2.91 -0.02 5.71 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 1.11 6.16 -2.39 -0.01 1.10 16 44 H 0.43 -0.13 9.10 -74.06 -0.67 -0.81 16 Total: -1.00 -91.14 371.44 4.40 -86.74 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.37 Total: 19.57 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.87 Total: -29.58 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.26 Total: -72.12 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.61 Total: -51.51 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -91.14 4.40 -86.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828341799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.946 kcal (2) G-P(sol) polarization free energy of solvation -91.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds