Wall clock time and date at job start Tue Mar 31 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47639 * 2 1 4 4 C 1.53004 * 109.47249 * 119.99901 * 2 1 3 5 5 O 1.45202 * 109.46802 * 64.99988 * 4 2 1 6 6 C 1.34226 * 117.00005 * 179.97438 * 5 4 2 7 7 O 1.20821 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99918 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.47386 * 60.00338 * 8 6 5 10 10 C 1.52998 * 109.47586 * 300.00139 * 8 6 5 11 11 N 1.46508 * 109.47106 * 180.02562 * 8 6 5 12 12 S 1.65598 * 120.00068 * 215.00260 * 11 8 6 13 13 O 1.42104 * 104.27569 * 308.92569 * 12 11 8 14 14 O 1.42102 * 104.27715 * 181.07232 * 12 11 8 15 15 C 1.81394 * 104.44995 * 64.99872 * 12 11 8 16 16 C 1.52996 * 109.47274 * 181.13237 * 15 12 11 17 17 C 1.50705 * 115.55119 * 294.68831 * 16 15 12 18 18 H 1.07997 * 120.00204 * 95.18736 * 17 16 15 19 19 C 1.37880 * 119.99717 * 274.91575 * 17 16 15 20 20 N 1.31515 * 120.00002 * 6.44517 * 19 17 16 21 21 Si 1.86796 * 119.99995 * 186.45182 * 19 17 16 22 22 H 1.48502 * 109.47056 * 89.99686 * 21 19 17 23 23 H 1.48497 * 109.47236 * 209.99611 * 21 19 17 24 24 H 1.48494 * 109.47246 * 330.00105 * 21 19 17 25 25 C 1.53001 * 117.50097 * 80.35449 * 16 15 12 26 26 C 1.52998 * 117.50418 * 149.01490 * 16 15 12 27 27 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47097 * 300.00312 * 1 2 3 29 29 H 1.09000 * 109.46920 * 59.99521 * 1 2 3 30 30 H 1.09000 * 109.47595 * 240.00266 * 2 1 3 31 31 H 1.09002 * 109.47870 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47356 * 300.00212 * 3 2 1 33 33 H 1.09001 * 109.47131 * 59.99708 * 3 2 1 34 34 H 1.08994 * 109.47310 * 305.00126 * 4 2 1 35 35 H 1.09001 * 109.47071 * 184.99416 * 4 2 1 36 36 H 1.09008 * 109.46689 * 60.00000 * 10 8 6 37 37 H 1.08997 * 109.47554 * 179.97438 * 10 8 6 38 38 H 1.09000 * 109.46920 * 300.00484 * 10 8 6 39 39 H 0.97001 * 119.99685 * 35.00197 * 11 8 6 40 40 H 1.08998 * 109.47196 * 61.13562 * 15 12 11 41 41 H 1.08995 * 109.47433 * 301.13458 * 15 12 11 42 42 H 0.97007 * 120.00067 * 185.08509 * 20 19 17 43 43 H 1.09004 * 117.50150 * 215.00633 * 25 16 15 44 44 H 1.09005 * 117.49603 * 0.02562 * 25 16 15 45 45 H 1.09008 * 117.49820 * 359.97438 * 26 16 15 46 46 H 1.08995 * 117.50619 * 144.97093 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6558 -2.1203 1.1911 6 6 2.0298 -2.8982 2.2191 7 8 2.6569 -2.4257 3.1373 8 6 1.6664 -4.3607 2.2284 9 1 2.1021 -4.8489 1.3567 10 6 0.1441 -4.5083 2.1879 11 7 2.1847 -4.9849 3.4483 12 16 2.7331 -6.5470 3.4104 13 8 1.6773 -7.2742 2.7974 14 8 3.1247 -6.8135 4.7502 15 6 4.1834 -6.4914 2.3223 16 6 4.7705 -7.8973 2.1827 17 6 5.3413 -8.4915 3.4446 18 1 4.7350 -9.1421 4.0574 19 6 6.6394 -8.2092 3.8136 20 7 7.3378 -7.3240 3.1365 21 14 7.4063 -9.0840 5.2750 22 1 8.0711 -10.3291 4.8135 23 1 8.4095 -8.1947 5.9136 24 1 6.3480 -9.4238 6.2596 25 6 4.0934 -8.8509 1.1963 26 6 5.4598 -8.2473 0.8624 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 -0.2419 -4.0438 1.2804 37 1 -0.1187 -5.5661 2.1942 38 1 -0.2916 -4.0201 3.0596 39 1 2.2067 -4.4831 4.2782 40 1 4.9330 -5.8255 2.7498 41 1 3.8871 -6.1223 1.3405 42 1 8.2731 -7.1787 3.3490 43 1 4.0608 -9.9081 1.4600 44 1 3.2298 -8.4765 0.6465 45 1 5.4947 -7.4759 0.0930 46 1 6.3264 -8.9068 0.9064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830980089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:09 Heat of formation + Delta-G solvation = -171.651925 kcal Electronic energy + Delta-G solvation = -27760.255791 eV Core-core repulsion = 23776.821349 eV Total energy + Delta-G solvation = -3983.434441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75419 -38.56712 -38.47853 -37.99348 -36.89875 -36.58260 -36.03556 -34.08053 -31.14907 -29.89912 -28.01641 -27.94464 -27.49456 -25.42249 -22.97143 -22.05716 -21.62388 -21.27807 -20.41062 -19.19032 -18.39544 -18.33443 -17.99075 -17.59901 -16.84558 -16.70128 -16.49328 -15.97057 -15.79677 -15.56372 -14.97064 -14.90337 -14.64712 -14.29475 -13.81267 -13.74990 -13.68524 -13.45759 -13.39177 -13.18519 -12.99180 -12.94198 -12.93434 -12.83099 -12.78793 -12.68937 -12.46526 -12.22818 -12.16252 -12.08139 -11.93137 -11.69586 -11.61278 -11.49138 -11.47160 -10.89668 -10.76070 -10.53794 -9.89741 -8.20567 -6.34302 -0.61162 1.00864 1.36472 1.36660 1.40148 1.50285 1.96640 2.39814 2.90229 3.07509 3.32213 3.37160 3.43565 3.72994 3.80425 3.85432 3.93965 3.96563 4.13260 4.17636 4.34269 4.42825 4.50661 4.51691 4.61584 4.63989 4.80821 4.82903 4.83645 4.96196 4.99781 5.00764 5.03482 5.19361 5.22144 5.23439 5.30610 5.42757 5.45511 5.47355 5.61896 5.71869 5.88073 6.21924 6.58692 6.73188 7.38557 8.87046 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.003160 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.443029 B = 8857.987052 C = 9245.806174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.061 3.939 5 O -0.343 6.343 6 C 0.464 3.536 7 O -0.527 6.527 8 C 0.154 3.846 9 H 0.140 0.860 10 C -0.164 4.164 11 N -1.109 6.109 12 S 2.628 3.372 13 O -0.973 6.973 14 O -0.987 6.987 15 C -0.557 4.557 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.039 3.961 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.275 1.275 25 C -0.192 4.192 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.423 0.577 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 15.683 -9.745 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.259 6.259 6 C 0.305 3.695 7 O -0.415 6.415 8 C 0.046 3.954 9 H 0.158 0.842 10 C -0.222 4.222 11 N -0.869 5.869 12 S 2.725 3.275 13 O -0.963 6.963 14 O -0.978 6.978 15 C -0.690 4.690 16 C 0.004 3.996 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.164 4.164 20 N -0.530 5.530 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.200 1.200 25 C -0.229 4.229 26 C -0.177 4.177 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.259 0.741 40 H 0.136 0.864 41 H 0.154 0.846 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.789 15.212 -9.133 22.472 hybrid contribution 1.617 0.241 1.174 2.012 sum -12.173 15.453 -7.960 21.221 Atomic orbital electron populations 1.21843 0.93638 1.02495 1.02500 1.21194 0.97522 0.96299 0.96025 1.21792 1.01366 0.93829 1.03271 1.23472 1.00350 0.76637 1.00759 1.86464 1.71915 1.23277 1.44241 1.23955 0.75496 0.90231 0.79768 1.90678 1.37960 1.75547 1.37357 1.20553 0.99069 0.86776 0.89043 0.84223 1.22314 0.89831 1.05169 1.04906 1.55759 1.79576 1.34159 1.17377 1.04427 0.75862 0.72149 0.75089 1.93491 1.53278 1.70283 1.79223 1.93514 1.84704 1.82927 1.36622 1.29931 1.17614 1.06433 1.14989 1.18393 1.01107 0.88568 0.91484 1.20770 0.98834 1.29926 1.07123 0.93108 1.25530 0.97826 0.94606 0.98437 1.70059 1.08723 1.31912 1.42290 0.85915 0.78431 0.79178 0.80560 1.19180 1.20464 1.20004 1.23298 0.96192 0.99148 1.04282 1.22504 0.94330 1.02407 0.98504 0.92275 0.92641 0.91111 0.89626 0.92359 0.90302 0.92117 0.91121 0.91644 0.87500 0.89768 0.91172 0.74103 0.86421 0.84581 0.92716 0.89752 0.87577 0.89300 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.09 71.98 0.65 -0.95 16 2 C -0.09 -1.13 3.16 -10.79 -0.03 -1.16 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 4 C 0.06 1.08 4.84 71.98 0.35 1.43 16 5 O -0.34 -6.96 9.66 -51.38 -0.50 -7.45 16 6 C 0.46 11.53 7.32 71.24 0.52 12.05 16 7 O -0.53 -16.46 15.74 21.98 0.35 -16.12 16 8 C 0.15 3.64 3.19 44.24 0.14 3.78 16 9 H 0.14 2.69 7.13 -2.39 -0.02 2.68 16 10 C -0.16 -3.08 9.45 71.98 0.68 -2.40 16 11 N -1.11 -33.46 5.15 -172.51 -0.89 -34.35 16 12 S 2.63 102.57 5.18 -56.49 -0.29 102.28 16 13 O -0.97 -38.13 17.11 -127.65 -2.18 -40.32 16 14 O -0.99 -48.09 17.48 -127.65 -2.23 -50.32 16 15 C -0.56 -22.56 5.83 71.98 0.42 -22.14 16 16 C 0.01 0.32 1.33 -52.93 -0.07 0.25 16 17 C -0.53 -29.32 7.97 25.60 0.20 -29.11 16 18 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 19 C 0.04 2.13 5.39 84.66 0.46 2.59 16 20 N -0.89 -49.94 12.93 21.45 0.28 -49.67 16 21 Si 0.93 44.65 29.55 68.60 2.03 46.68 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 C -0.19 -7.83 9.96 30.62 0.30 -7.52 16 26 C -0.14 -6.02 9.43 30.62 0.29 -5.73 16 27 H 0.06 0.71 7.82 -2.39 -0.02 0.69 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 35 H 0.07 1.24 8.13 -2.39 -0.02 1.23 16 36 H 0.11 1.41 8.11 -2.38 -0.02 1.39 16 37 H 0.08 1.78 7.42 -2.39 -0.02 1.77 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.42 12.59 8.18 -96.74 -0.79 11.80 16 40 H 0.12 5.25 8.14 -2.39 -0.02 5.23 16 41 H 0.14 4.23 7.36 -2.39 -0.02 4.21 16 42 H 0.26 14.07 8.32 -92.70 -0.77 13.30 16 43 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 45 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 46 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -71.61 396.41 1.31 -70.30 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.17 Total: 28.61 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 4.58 Total: -49.64 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -0.61 Total: -84.02 kcal Atomic # 8 Polarization: -109.64 SS G_CDS: -4.57 Total: -114.20 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 102.57 SS G_CDS: -0.29 Total: 102.28 kcal Total: -71.61 1.31 -70.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830980089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.352 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds