Wall clock time and date at job start Tue Mar 31 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99822 * 2 1 4 4 C 1.52999 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47190 * 174.99722 * 4 3 2 6 6 C 1.53001 * 109.47040 * 54.99599 * 4 3 2 7 7 N 1.46901 * 109.47207 * 179.55140 * 6 4 3 8 8 C 1.47011 * 111.00314 * 294.01759 * 7 6 4 9 9 C 1.53095 * 109.26195 * 177.60858 * 8 7 6 10 10 O 1.43012 * 109.25894 * 56.84142 * 9 8 7 11 11 C 1.43011 * 113.74261 * 301.33263 * 10 9 8 12 12 H 1.09003 * 109.50891 * 298.73932 * 11 10 9 13 13 C 1.53003 * 109.50914 * 178.60328 * 11 10 9 14 14 C 1.47016 * 111.00141 * 170.37744 * 7 6 4 15 15 O 1.45202 * 109.46907 * 295.00087 * 4 3 2 16 16 C 1.34233 * 116.99646 * 269.99526 * 15 4 3 17 17 O 1.20827 * 119.99758 * 0.02562 * 16 15 4 18 18 C 1.50696 * 119.99884 * 180.27488 * 16 15 4 19 19 S 1.80997 * 109.47299 * 179.72637 * 18 16 15 20 20 C 1.76200 * 100.00134 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99912 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99885 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99993 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46763 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47017 * 119.99582 * 24 22 20 27 27 H 1.48501 * 109.47280 * 240.00106 * 24 22 20 28 28 H 1.08995 * 109.46998 * 60.00463 * 1 2 3 29 29 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47198 * 299.99954 * 1 2 3 31 31 H 1.09000 * 109.47591 * 59.99659 * 3 2 1 32 32 H 1.09003 * 109.47283 * 299.99752 * 3 2 1 33 33 H 1.09002 * 109.47071 * 299.55344 * 6 4 3 34 34 H 1.09004 * 109.47185 * 59.55329 * 6 4 3 35 35 H 1.09011 * 109.50313 * 297.54118 * 8 7 6 36 36 H 1.08998 * 109.50925 * 57.66768 * 8 7 6 37 37 H 1.08998 * 109.50868 * 176.78228 * 9 8 7 38 38 H 1.09008 * 109.50067 * 296.86804 * 9 8 7 39 39 H 1.09001 * 109.46998 * 60.00312 * 13 11 10 40 40 H 1.09001 * 109.46988 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.46861 * 300.00034 * 13 11 10 42 42 H 1.09002 * 109.50659 * 302.32673 * 14 7 6 43 43 H 1.08996 * 109.50540 * 62.45985 * 14 7 6 44 44 H 1.08997 * 109.47242 * 299.72782 * 18 16 15 45 45 H 1.09002 * 109.47089 * 59.72549 * 18 16 15 46 46 H 0.97002 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 -0.0890 6 6 3.9791 0.3194 -1.1806 7 7 5.4441 0.2122 -1.1862 8 6 6.0668 1.5169 -1.4535 9 6 7.5896 1.3719 -1.3913 10 8 8.0067 0.3715 -2.3243 11 6 7.4200 -0.9120 -2.0930 12 1 7.7117 -1.2732 -1.1068 13 6 7.9031 -1.8947 -3.1616 14 6 5.8954 -0.7902 -2.1624 15 8 3.9718 0.5700 1.2417 16 6 4.2403 1.3927 2.2677 17 8 4.1144 2.5869 2.1334 18 6 4.7040 0.8273 3.5854 19 16 4.9884 2.1788 4.7553 20 6 5.5072 1.2587 6.1655 21 1 5.5660 0.1814 6.1158 22 6 5.8404 1.9184 7.3404 23 7 5.7693 3.2314 7.4009 24 14 6.3898 0.9429 8.8358 25 1 6.3843 -0.5061 8.5108 26 1 7.7621 1.3590 9.2214 27 1 5.4590 1.2001 9.9639 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.5424 -0.6750 -1.0868 34 1 3.6446 0.7767 -2.1118 35 1 5.7744 1.8635 -2.4448 36 1 5.7388 2.2371 -0.7041 37 1 8.0565 2.3236 -1.6450 38 1 7.8863 1.0779 -0.3845 39 1 8.9888 -1.9781 -3.1142 40 1 7.4558 -2.8728 -2.9844 41 1 7.6090 -1.5334 -4.1470 42 1 5.4423 -1.7540 -1.9303 43 1 5.6003 -0.4805 -3.1649 44 1 3.9409 0.1578 3.9822 45 1 5.6314 0.2739 3.4371 46 1 6.0018 3.6924 8.2221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842961577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:42 Heat of formation + Delta-G solvation = -192.376969 kcal Electronic energy + Delta-G solvation = -27345.815131 eV Core-core repulsion = 23361.481984 eV Total energy + Delta-G solvation = -3984.333147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70298 -40.62383 -39.05772 -37.62760 -36.63342 -34.61069 -33.81509 -32.80959 -30.99628 -29.70589 -28.06745 -27.70919 -26.81919 -25.21570 -24.08851 -22.99854 -21.59564 -21.28560 -19.92511 -18.82120 -17.87356 -17.68107 -17.33198 -17.21374 -16.92106 -16.86850 -16.56219 -16.42752 -16.05629 -15.88866 -15.70622 -15.43005 -14.88395 -14.62027 -14.41465 -14.06987 -13.82421 -13.56747 -13.32517 -13.22034 -13.15646 -13.10690 -12.92153 -12.84970 -12.83389 -12.63607 -12.39091 -12.14752 -11.82633 -11.74836 -11.65962 -11.51210 -11.42334 -11.17342 -10.72356 -10.62602 -10.37767 -9.41945 -8.72528 -8.37672 -6.16682 1.03938 1.16961 1.41017 1.41707 1.56143 1.91166 2.23805 2.59053 2.72005 2.80058 2.97337 3.26582 3.53658 3.71020 3.81262 3.83900 3.92491 3.98061 4.12557 4.15799 4.17475 4.20609 4.27944 4.38030 4.44344 4.46508 4.50593 4.51990 4.60338 4.61372 4.69250 4.72714 4.78469 4.79322 4.85685 4.95367 5.08837 5.27397 5.35539 5.41424 5.87999 5.90212 6.08814 6.18406 6.18784 6.75380 7.04327 8.71791 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010115 B = 0.003207 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.619980 B = 8729.921437 C =10523.640424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.048 3.952 4 C 0.090 3.910 5 H 0.091 0.909 6 C 0.074 3.926 7 N -0.552 5.552 8 C 0.016 3.984 9 C 0.064 3.936 10 O -0.396 6.396 11 C 0.080 3.920 12 H 0.055 0.945 13 C -0.137 4.137 14 C 0.032 3.968 15 O -0.326 6.326 16 C 0.488 3.512 17 O -0.522 6.522 18 C -0.108 4.108 19 S -0.131 6.131 20 C -0.549 4.549 21 H 0.083 0.917 22 C 0.017 3.983 23 N -0.909 5.909 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -9.868 -23.284 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.029 4.029 4 C 0.035 3.965 5 H 0.109 0.891 6 C -0.053 4.053 7 N -0.278 5.278 8 C -0.112 4.112 9 C -0.012 4.012 10 O -0.316 6.316 11 C 0.023 3.977 12 H 0.073 0.927 13 C -0.195 4.195 14 C -0.096 4.096 15 O -0.242 6.242 16 C 0.331 3.669 17 O -0.411 6.411 18 C -0.256 4.256 19 S 0.096 5.904 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.545 5.545 24 Si 0.820 3.180 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.272 -8.541 -23.104 25.000 hybrid contribution -0.287 -0.670 0.794 1.078 sum -4.559 -9.211 -22.310 24.564 Atomic orbital electron populations 1.22953 0.79426 1.04055 1.00730 1.87899 1.21406 1.26851 1.95547 1.22930 0.91894 0.85922 1.02147 1.23091 0.92990 0.98438 0.81993 0.89134 1.22088 0.87018 1.01874 0.94332 1.62093 1.07252 1.07647 1.50758 1.22820 0.96118 0.91566 1.00710 1.22652 0.93004 0.92631 0.92958 1.87951 1.69215 1.19858 1.54565 1.22345 0.91452 0.84147 0.99795 0.92678 1.21734 1.02213 0.97900 0.97648 1.22810 0.96119 0.96807 0.93841 1.86658 1.76923 1.39915 1.20703 1.22924 0.73050 0.85120 0.85776 1.90625 1.49817 1.17618 1.83072 1.23047 1.05944 1.04074 0.92572 1.85413 1.87770 1.09854 1.07332 1.23224 1.52547 0.95615 0.98244 0.89896 1.26094 0.94605 0.96223 1.01871 1.70164 1.46446 1.08972 1.28957 0.84904 0.77975 0.78521 0.76559 1.18198 1.19778 1.19786 0.92191 0.88105 0.94436 0.93969 0.88636 0.88335 0.90468 0.92683 0.90779 0.86903 0.93613 0.91721 0.89042 0.91565 0.88350 0.93159 0.86727 0.86697 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.63 16 2 O -0.40 -9.01 9.80 -145.57 -1.43 -10.43 16 3 C 0.05 1.09 5.79 71.98 0.42 1.51 16 4 C 0.09 2.31 2.23 30.59 0.07 2.37 16 5 H 0.09 2.46 5.50 -2.39 -0.01 2.45 16 6 C 0.07 1.50 4.45 86.30 0.38 1.88 16 7 N -0.55 -12.26 4.61 -895.19 -4.13 -16.38 16 8 C 0.02 0.35 5.43 86.31 0.47 0.82 16 9 C 0.06 1.45 7.01 72.01 0.50 1.96 16 10 O -0.40 -9.22 10.47 -148.98 -1.56 -10.78 16 11 C 0.08 1.56 3.43 30.63 0.10 1.66 16 12 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.14 -1.88 9.57 71.98 0.69 -1.19 16 14 C 0.03 0.57 4.93 86.31 0.43 0.99 16 15 O -0.33 -10.69 9.73 -48.80 -0.47 -11.17 16 16 C 0.49 19.16 7.95 71.23 0.57 19.72 16 17 O -0.52 -22.96 15.08 21.96 0.33 -22.63 16 18 C -0.11 -4.54 6.27 71.23 0.45 -4.10 16 19 S -0.13 -7.18 20.58 -56.49 -1.16 -8.34 16 20 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.02 0.97 5.49 84.86 0.47 1.44 16 23 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 24 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.02 7.48 -2.39 -0.02 2.01 16 34 H 0.08 1.20 8.12 -2.38 -0.02 1.18 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.82 6.36 -2.39 -0.02 1.80 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.11 4.50 8.14 -2.40 -0.02 4.48 16 45 H 0.11 4.54 8.14 -2.39 -0.02 4.52 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -72.70 391.21 1.28 -71.42 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.95 Total: 19.49 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.43 Total: -1.93 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -3.84 Total: -71.11 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -3.13 Total: -55.01 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -1.16 Total: -8.34 kcal Total: -72.70 1.28 -71.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842961577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.952 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds