Wall clock time and date at job start Tue Mar 31 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99769 * 2 1 4 4 C 1.53006 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47148 * 174.99988 * 4 3 2 6 6 C 1.53005 * 109.47107 * 54.99594 * 4 3 2 7 7 N 1.46895 * 109.46742 * 179.56489 * 6 4 3 8 8 C 1.47013 * 111.00159 * 170.38246 * 7 6 4 9 9 C 1.53093 * 109.26252 * 182.39080 * 8 7 6 10 10 O 1.43013 * 109.25996 * 303.14898 * 9 8 7 11 11 C 1.43020 * 113.73583 * 58.66679 * 10 9 8 12 12 H 1.08995 * 109.50469 * 61.26926 * 11 10 9 13 13 C 1.53006 * 109.50222 * 181.39804 * 11 10 9 14 14 C 1.47022 * 110.99998 * 294.01453 * 7 6 4 15 15 O 1.45207 * 109.46830 * 294.99908 * 4 3 2 16 16 C 1.34231 * 116.99573 * 270.00162 * 15 4 3 17 17 O 1.20823 * 119.99977 * 0.27486 * 16 15 4 18 18 C 1.50697 * 119.99874 * 180.02562 * 16 15 4 19 19 S 1.80999 * 109.47393 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00069 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00313 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00022 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99999 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00317 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46905 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47331 * 119.99956 * 24 22 20 27 27 H 1.48507 * 109.47047 * 240.00440 * 24 22 20 28 28 H 1.09000 * 109.47178 * 299.99744 * 1 2 3 29 29 H 1.08994 * 109.47302 * 60.00417 * 1 2 3 30 30 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47531 * 60.00240 * 3 2 1 32 32 H 1.08999 * 109.47192 * 299.99486 * 3 2 1 33 33 H 1.09003 * 109.46858 * 299.56310 * 6 4 3 34 34 H 1.09000 * 109.46853 * 59.56440 * 6 4 3 35 35 H 1.09008 * 109.50275 * 302.32364 * 8 7 6 36 36 H 1.08998 * 109.50885 * 62.44899 * 8 7 6 37 37 H 1.08995 * 109.51219 * 183.21061 * 9 8 7 38 38 H 1.09001 * 109.54265 * 63.10356 * 9 8 7 39 39 H 1.09005 * 109.46669 * 179.78094 * 13 11 10 40 40 H 1.09001 * 109.47015 * 299.78220 * 13 11 10 41 41 H 1.08994 * 109.47305 * 59.78948 * 13 11 10 42 42 H 1.09003 * 109.50195 * 297.53950 * 14 7 6 43 43 H 1.08999 * 109.50702 * 57.62905 * 14 7 6 44 44 H 1.08994 * 109.47081 * 300.00015 * 18 16 15 45 45 H 1.09001 * 109.47103 * 59.99542 * 18 16 15 46 46 H 0.96991 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1767 -0.0902 6 6 3.9780 0.3198 -1.1826 7 7 5.4430 0.2125 -1.1892 8 6 5.8936 -0.7895 -2.1661 9 6 7.4181 -0.9116 -2.0978 10 8 8.0050 0.3719 -2.3290 11 6 7.5885 1.3720 -1.3952 12 1 7.8859 1.0767 -0.3890 13 6 8.2439 2.7079 -1.7513 14 6 6.0657 1.5172 -1.4564 15 8 3.9727 0.5696 1.2399 16 6 4.2419 1.3919 2.2660 17 8 4.1116 2.5858 2.1336 18 6 4.7013 0.8257 3.5848 19 16 4.9809 2.1764 4.7568 20 6 5.4937 1.2553 6.1686 21 1 5.5526 0.1781 6.1184 22 6 5.8231 1.9142 7.3450 23 7 5.7518 3.2272 7.4061 24 14 6.3674 0.9378 8.8416 25 1 6.3631 -0.5111 8.5157 26 1 7.7384 1.3537 9.2321 27 1 5.4328 1.1943 9.9668 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.5413 -0.6745 -1.0888 34 1 3.6430 0.7776 -2.1133 35 1 5.4405 -1.7534 -1.9341 36 1 5.5977 -0.4794 -3.1683 37 1 7.7617 -1.6114 -2.8595 38 1 7.7111 -1.2736 -1.1123 39 1 7.9231 3.4705 -1.0416 40 1 9.3281 2.6038 -1.7076 41 1 7.9473 3.0011 -2.7583 42 1 5.7727 1.8642 -2.4473 43 1 5.7377 2.2374 -0.7068 44 1 3.9374 0.1552 3.9782 45 1 5.6297 0.2733 3.4395 46 1 5.9816 3.6876 8.2283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842961579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:49 Heat of formation + Delta-G solvation = -169.564152 kcal Electronic energy + Delta-G solvation = -27468.633669 eV Core-core repulsion = 23485.289760 eV Total energy + Delta-G solvation = -3983.343909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41359 -39.62139 -38.05232 -36.49634 -35.48195 -32.96373 -32.46232 -31.81954 -29.42042 -28.71000 -27.13989 -26.28211 -25.53315 -24.51670 -22.71372 -21.89787 -20.68272 -20.20182 -17.99394 -17.33119 -16.89642 -16.60778 -16.34392 -16.17886 -15.76411 -15.55537 -15.30829 -15.08180 -14.84627 -14.82505 -14.37286 -14.05953 -13.96201 -13.15149 -13.03805 -12.86454 -12.70764 -12.63627 -12.39205 -12.25467 -12.05865 -11.98218 -11.80969 -11.59807 -11.32540 -11.08081 -11.05264 -10.86906 -10.78252 -10.61702 -10.33301 -9.98839 -9.87225 -9.84077 -9.72420 -9.10158 -8.57158 -8.32280 -6.57067 -6.25488 -3.97253 2.68030 2.72892 3.21094 3.25730 3.31056 3.44263 3.52960 3.61013 3.63921 4.17039 4.45028 4.66223 4.70350 4.80102 4.87228 4.93860 4.95913 5.02732 5.05862 5.10606 5.12487 5.18300 5.20826 5.25240 5.33437 5.40778 5.43328 5.45761 5.48608 5.54351 5.61318 5.67937 5.73626 5.78793 5.85529 5.90418 6.01316 6.15985 6.70259 6.72644 6.79647 6.93855 7.04070 7.58244 8.25728 8.33170 9.20494 10.82122 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003366 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.360608 B = 8316.706972 C =10122.592906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.045 3.955 4 C 0.097 3.903 5 H 0.097 0.903 6 C 0.065 3.935 7 N -0.531 5.531 8 C 0.021 3.979 9 C 0.064 3.936 10 O -0.385 6.385 11 C 0.089 3.911 12 H 0.071 0.929 13 C -0.145 4.145 14 C 0.018 3.982 15 O -0.328 6.328 16 C 0.479 3.521 17 O -0.497 6.497 18 C -0.127 4.127 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.920 3.080 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -6.621 -21.669 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.033 4.033 4 C 0.041 3.959 5 H 0.115 0.885 6 C -0.063 4.063 7 N -0.256 5.256 8 C -0.107 4.107 9 C -0.013 4.013 10 O -0.304 6.304 11 C 0.032 3.968 12 H 0.089 0.911 13 C -0.202 4.202 14 C -0.110 4.110 15 O -0.245 6.245 16 C 0.321 3.679 17 O -0.384 6.384 18 C -0.275 4.275 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.094 0.906 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.747 3.253 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.661 -5.273 -21.458 22.398 hybrid contribution -0.382 -1.352 0.515 1.496 sum -4.043 -6.624 -20.944 22.335 Atomic orbital electron populations 1.22758 0.81080 1.02821 0.99983 1.87935 1.19584 1.26911 1.95399 1.22984 0.92993 0.85674 1.01618 1.22716 0.91794 0.98279 0.83093 0.88508 1.22135 0.87302 1.02210 0.94633 1.62119 1.06825 1.07216 1.49431 1.22769 0.97153 0.96918 0.93869 1.22632 0.91129 0.85415 1.02103 1.87964 1.68750 1.19154 1.54539 1.22157 0.92049 0.89214 0.93417 0.91081 1.21758 1.01473 0.94664 1.02351 1.22933 0.95768 0.91711 1.00579 1.86702 1.77329 1.40309 1.20139 1.23343 0.73428 0.85511 0.85576 1.90632 1.48528 1.16604 1.82627 1.23265 1.04814 1.06429 0.92964 1.85344 1.87638 1.05574 1.04820 1.22892 1.52480 0.95251 0.97566 0.90569 1.24993 0.94875 0.95141 0.98475 1.70022 1.45500 1.07055 1.27766 0.86086 0.78345 0.79784 0.81131 1.19483 1.20511 1.20543 0.93863 0.94269 0.89510 0.91822 0.91863 0.88309 0.93011 0.89372 0.94151 0.88532 0.91998 0.90547 0.91435 0.92073 0.93961 0.89456 0.88091 0.87956 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.64 9.80 -38.79 -0.38 -5.02 16 3 C 0.04 0.53 5.80 37.16 0.22 0.75 16 4 C 0.10 1.30 2.23 -26.73 -0.06 1.24 16 5 H 0.10 1.33 5.50 -51.93 -0.29 1.05 16 6 C 0.06 0.72 4.45 -3.82 -0.02 0.70 16 7 N -0.53 -6.26 4.61 -234.30 -1.08 -7.34 16 8 C 0.02 0.20 5.65 -3.71 -0.02 0.18 16 9 C 0.06 0.63 7.01 37.21 0.26 0.89 16 10 O -0.38 -4.62 10.47 -35.23 -0.37 -4.99 16 11 C 0.09 1.05 3.43 -26.68 -0.09 0.96 16 12 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 13 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 14 C 0.02 0.21 4.72 -3.71 -0.02 0.19 16 15 O -0.33 -5.47 9.73 -42.02 -0.41 -5.88 16 16 C 0.48 9.33 7.95 36.00 0.29 9.62 16 17 O -0.50 -10.67 15.08 -18.75 -0.28 -10.95 16 18 C -0.13 -2.66 6.27 36.00 0.23 -2.43 16 19 S -0.06 -1.61 20.58 -107.50 -2.21 -3.82 16 20 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 21 H 0.08 2.06 7.80 -52.49 -0.41 1.65 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 24 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.13 7.48 -51.93 -0.39 0.74 16 34 H 0.05 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.09 0.76 8.09 -51.92 -0.42 0.34 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.09 6.36 -51.93 -0.33 0.76 16 44 H 0.10 2.00 8.14 -51.92 -0.42 1.58 16 45 H 0.10 2.03 8.14 -51.91 -0.42 1.61 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -33.33 391.21 -8.41 -41.74 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.73 Total: -0.42 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 2.45 Total: -0.39 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.35 Total: -32.42 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.44 Total: -26.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.33 -8.41 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842961579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.820 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds