Wall clock time and date at job start Tue Mar 31 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99769 * 2 1 4 4 C 1.53006 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47148 * 174.99988 * 4 3 2 6 6 C 1.53005 * 109.47107 * 54.99594 * 4 3 2 7 7 N 1.46895 * 109.46742 * 179.56489 * 6 4 3 8 8 C 1.47013 * 111.00159 * 170.38246 * 7 6 4 9 9 C 1.53093 * 109.26252 * 182.39080 * 8 7 6 10 10 O 1.43013 * 109.25996 * 303.14898 * 9 8 7 11 11 C 1.43020 * 113.73583 * 58.66679 * 10 9 8 12 12 H 1.08995 * 109.50469 * 61.26926 * 11 10 9 13 13 C 1.53006 * 109.50222 * 181.39804 * 11 10 9 14 14 C 1.47022 * 110.99998 * 294.01453 * 7 6 4 15 15 O 1.45207 * 109.46830 * 294.99908 * 4 3 2 16 16 C 1.34231 * 116.99573 * 270.00162 * 15 4 3 17 17 O 1.20823 * 119.99977 * 0.27486 * 16 15 4 18 18 C 1.50697 * 119.99874 * 180.02562 * 16 15 4 19 19 S 1.80999 * 109.47393 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00069 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00313 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00022 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99999 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00317 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46905 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47331 * 119.99956 * 24 22 20 27 27 H 1.48507 * 109.47047 * 240.00440 * 24 22 20 28 28 H 1.09000 * 109.47178 * 299.99744 * 1 2 3 29 29 H 1.08994 * 109.47302 * 60.00417 * 1 2 3 30 30 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47531 * 60.00240 * 3 2 1 32 32 H 1.08999 * 109.47192 * 299.99486 * 3 2 1 33 33 H 1.09003 * 109.46858 * 299.56310 * 6 4 3 34 34 H 1.09000 * 109.46853 * 59.56440 * 6 4 3 35 35 H 1.09008 * 109.50275 * 302.32364 * 8 7 6 36 36 H 1.08998 * 109.50885 * 62.44899 * 8 7 6 37 37 H 1.08995 * 109.51219 * 183.21061 * 9 8 7 38 38 H 1.09001 * 109.54265 * 63.10356 * 9 8 7 39 39 H 1.09005 * 109.46669 * 179.78094 * 13 11 10 40 40 H 1.09001 * 109.47015 * 299.78220 * 13 11 10 41 41 H 1.08994 * 109.47305 * 59.78948 * 13 11 10 42 42 H 1.09003 * 109.50195 * 297.53950 * 14 7 6 43 43 H 1.08999 * 109.50702 * 57.62905 * 14 7 6 44 44 H 1.08994 * 109.47081 * 300.00015 * 18 16 15 45 45 H 1.09001 * 109.47103 * 59.99542 * 18 16 15 46 46 H 0.96991 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1767 -0.0902 6 6 3.9780 0.3198 -1.1826 7 7 5.4430 0.2125 -1.1892 8 6 5.8936 -0.7895 -2.1661 9 6 7.4181 -0.9116 -2.0978 10 8 8.0050 0.3719 -2.3290 11 6 7.5885 1.3720 -1.3952 12 1 7.8859 1.0767 -0.3890 13 6 8.2439 2.7079 -1.7513 14 6 6.0657 1.5172 -1.4564 15 8 3.9727 0.5696 1.2399 16 6 4.2419 1.3919 2.2660 17 8 4.1116 2.5858 2.1336 18 6 4.7013 0.8257 3.5848 19 16 4.9809 2.1764 4.7568 20 6 5.4937 1.2553 6.1686 21 1 5.5526 0.1781 6.1184 22 6 5.8231 1.9142 7.3450 23 7 5.7518 3.2272 7.4061 24 14 6.3674 0.9378 8.8416 25 1 6.3631 -0.5111 8.5157 26 1 7.7384 1.3537 9.2321 27 1 5.4328 1.1943 9.9668 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.5413 -0.6745 -1.0888 34 1 3.6430 0.7776 -2.1133 35 1 5.4405 -1.7534 -1.9341 36 1 5.5977 -0.4794 -3.1683 37 1 7.7617 -1.6114 -2.8595 38 1 7.7111 -1.2736 -1.1123 39 1 7.9231 3.4705 -1.0416 40 1 9.3281 2.6038 -1.7076 41 1 7.9473 3.0011 -2.7583 42 1 5.7727 1.8642 -2.4473 43 1 5.7377 2.2374 -0.7068 44 1 3.9374 0.1552 3.9782 45 1 5.6297 0.2733 3.4395 46 1 5.9816 3.6876 8.2283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842961579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:48 Heat of formation + Delta-G solvation = -192.323343 kcal Electronic energy + Delta-G solvation = -27469.620581 eV Core-core repulsion = 23485.289760 eV Total energy + Delta-G solvation = -3984.330821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70579 -40.62323 -39.05640 -37.62195 -36.63190 -34.60793 -33.79630 -32.89560 -31.00882 -29.55199 -27.96809 -27.71210 -27.07979 -25.40053 -23.66792 -23.09436 -21.69629 -21.28435 -19.92288 -18.82650 -17.87004 -17.64533 -17.38685 -17.21223 -16.94865 -16.88514 -16.52952 -16.39621 -16.09553 -15.87458 -15.75023 -15.32601 -14.83893 -14.61634 -14.40420 -14.09066 -13.82839 -13.64319 -13.32060 -13.25547 -13.18389 -13.14046 -12.92007 -12.88195 -12.79195 -12.63507 -12.39226 -12.15395 -11.81498 -11.74359 -11.65620 -11.51180 -11.42140 -11.17076 -10.72327 -10.63125 -10.37659 -9.41717 -8.72292 -8.37445 -6.16459 1.04074 1.16890 1.41166 1.41805 1.56201 1.91130 2.23959 2.59395 2.71865 2.80265 2.97654 3.26743 3.51573 3.70999 3.78166 3.85330 3.93697 3.99722 4.09187 4.16106 4.17519 4.23423 4.29390 4.37986 4.43638 4.45055 4.51070 4.52728 4.58164 4.61259 4.64871 4.70076 4.79381 4.84807 4.85610 4.93907 5.05231 5.21071 5.35554 5.41673 5.87865 5.91000 6.08742 6.18650 6.18679 6.75306 7.04636 8.72070 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003366 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.360608 B = 8316.706972 C =10122.592906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.049 3.951 4 C 0.090 3.910 5 H 0.090 0.910 6 C 0.074 3.926 7 N -0.553 5.553 8 C 0.024 3.976 9 C 0.059 3.941 10 O -0.396 6.396 11 C 0.088 3.912 12 H 0.049 0.951 13 C -0.142 4.142 14 C 0.024 3.976 15 O -0.326 6.326 16 C 0.488 3.512 17 O -0.522 6.522 18 C -0.108 4.108 19 S -0.130 6.130 20 C -0.549 4.549 21 H 0.083 0.917 22 C 0.018 3.982 23 N -0.909 5.909 24 Si 0.998 3.002 25 H -0.259 1.259 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -8.390 -22.916 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.029 4.029 4 C 0.035 3.965 5 H 0.108 0.892 6 C -0.053 4.053 7 N -0.278 5.278 8 C -0.103 4.103 9 C -0.017 4.017 10 O -0.315 6.315 11 C 0.030 3.970 12 H 0.067 0.933 13 C -0.199 4.199 14 C -0.105 4.105 15 O -0.242 6.242 16 C 0.331 3.669 17 O -0.411 6.411 18 C -0.256 4.256 19 S 0.097 5.903 20 C -0.697 4.697 21 H 0.101 0.899 22 C -0.187 4.187 23 N -0.545 5.545 24 Si 0.820 3.180 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.072 -7.062 -22.733 24.151 hybrid contribution -0.316 -0.856 0.760 1.187 sum -4.388 -7.918 -21.974 23.766 Atomic orbital electron populations 1.22951 0.79428 1.04055 1.00730 1.87898 1.21405 1.26845 1.95546 1.22930 0.91886 0.85923 1.02147 1.23096 0.92984 0.98416 0.82037 0.89210 1.22091 0.87044 1.01895 0.94294 1.62100 1.07246 1.07649 1.50796 1.22802 0.96839 0.96869 0.93836 1.22822 0.91478 0.84964 1.02469 1.87950 1.69244 1.19909 1.54438 1.22146 0.92472 0.89970 0.92444 0.93296 1.21742 1.01453 0.93809 1.02899 1.22832 0.95476 0.91539 1.00603 1.86657 1.76884 1.39914 1.20751 1.22926 0.73061 0.85127 0.85772 1.90623 1.49752 1.17634 1.83104 1.23047 1.05975 1.04083 0.92535 1.85410 1.88003 1.09836 1.07064 1.23223 1.52719 0.95608 0.98115 0.89918 1.26078 0.94550 0.96202 1.01837 1.70162 1.46482 1.08994 1.28903 0.84914 0.77991 0.78517 0.76597 1.18228 1.19775 1.19771 0.94439 0.92190 0.88104 0.93958 0.88644 0.88263 0.90490 0.88135 0.93104 0.85994 0.93111 0.90522 0.91272 0.91053 0.92762 0.91023 0.86728 0.86731 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -9.02 9.80 -145.57 -1.43 -10.45 16 3 C 0.05 1.09 5.80 71.98 0.42 1.51 16 4 C 0.09 2.31 2.23 30.60 0.07 2.38 16 5 H 0.09 2.46 5.50 -2.39 -0.01 2.45 16 6 C 0.07 1.50 4.45 86.31 0.38 1.88 16 7 N -0.55 -12.24 4.61 -895.20 -4.13 -16.37 16 8 C 0.02 0.41 5.65 86.31 0.49 0.90 16 9 C 0.06 1.08 7.01 72.01 0.50 1.58 16 10 O -0.40 -9.11 10.47 -148.98 -1.56 -10.67 16 11 C 0.09 2.04 3.43 30.63 0.10 2.14 16 12 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 13 C -0.14 -2.75 9.57 71.98 0.69 -2.07 16 14 C 0.02 0.53 4.72 86.31 0.41 0.93 16 15 O -0.33 -10.72 9.73 -48.78 -0.47 -11.20 16 16 C 0.49 19.18 7.95 71.24 0.57 19.75 16 17 O -0.52 -22.97 15.08 21.97 0.33 -22.64 16 18 C -0.11 -4.55 6.27 71.24 0.45 -4.10 16 19 S -0.13 -7.14 20.58 -56.49 -1.16 -8.30 16 20 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.02 1.04 5.49 84.86 0.47 1.51 16 23 N -0.91 -54.94 13.22 21.65 0.29 -54.65 16 24 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.03 7.48 -2.39 -0.02 2.01 16 34 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 35 H 0.10 1.47 8.09 -2.38 -0.02 1.45 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.81 6.36 -2.39 -0.02 1.80 16 44 H 0.11 4.50 8.14 -2.40 -0.02 4.48 16 45 H 0.11 4.53 8.14 -2.39 -0.02 4.51 16 46 H 0.27 15.22 8.31 -92.72 -0.77 14.45 16 Total: -1.00 -72.58 391.21 1.28 -71.30 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.95 Total: 20.13 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.43 Total: -2.58 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -3.84 Total: -71.02 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -3.13 Total: -54.96 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.16 Total: -8.30 kcal Total: -72.58 1.28 -71.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842961579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.023 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds