Wall clock time and date at job start Tue Mar 31 2020 18:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00444 * 2 1 4 4 C 1.52997 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47503 * 184.99682 * 4 3 2 6 6 C 1.52999 * 109.47375 * 305.00142 * 4 3 2 7 7 N 1.46902 * 109.47324 * 179.52426 * 6 4 3 8 8 C 1.47012 * 111.00108 * 176.13916 * 7 6 4 9 9 C 1.53094 * 109.26037 * 177.61026 * 8 7 6 10 10 O 1.43016 * 109.25624 * 56.85012 * 9 8 7 11 11 C 1.43020 * 113.74041 * 301.33113 * 10 9 8 12 12 H 1.09001 * 109.50259 * 298.73567 * 11 10 9 13 13 C 1.53001 * 109.50768 * 178.64983 * 11 10 9 14 14 C 1.47023 * 110.99722 * 52.50844 * 7 6 4 15 15 O 1.45202 * 109.47114 * 65.00047 * 4 3 2 16 16 C 1.34229 * 116.99921 * 89.99574 * 15 4 3 17 17 O 1.20824 * 120.00345 * 0.02562 * 16 15 4 18 18 C 1.50699 * 119.99865 * 180.02562 * 16 15 4 19 19 S 1.81007 * 109.47260 * 180.02562 * 18 16 15 20 20 C 1.76194 * 100.00089 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99797 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46947 * 89.99914 * 24 22 20 26 26 H 1.48500 * 109.47041 * 209.99893 * 24 22 20 27 27 H 1.48498 * 109.47426 * 330.00048 * 24 22 20 28 28 H 1.09002 * 109.46809 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47165 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.46604 * 59.99780 * 3 2 1 32 32 H 1.08998 * 109.47183 * 300.00000 * 3 2 1 33 33 H 1.08998 * 109.47069 * 299.52882 * 6 4 3 34 34 H 1.09004 * 109.47128 * 59.52372 * 6 4 3 35 35 H 1.09006 * 109.50785 * 297.54725 * 8 7 6 36 36 H 1.09005 * 109.50438 * 57.67640 * 8 7 6 37 37 H 1.08993 * 109.50879 * 176.78101 * 9 8 7 38 38 H 1.08999 * 109.50769 * 296.87556 * 9 8 7 39 39 H 1.09000 * 109.47191 * 59.99839 * 13 11 10 40 40 H 1.08994 * 109.47229 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47066 * 300.00188 * 13 11 10 42 42 H 1.09004 * 109.50403 * 302.33002 * 14 7 6 43 43 H 1.08999 * 109.50300 * 62.45219 * 14 7 6 44 44 H 1.09000 * 109.47128 * 299.99967 * 18 16 15 45 45 H 1.08996 * 109.47348 * 60.00267 * 18 16 15 46 46 H 0.97006 * 120.00310 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1764 0.0902 6 6 3.9781 0.3196 1.1826 7 7 5.4417 0.1942 1.1766 8 6 5.9111 -0.5549 2.3512 9 6 7.4319 -0.7133 2.2745 10 8 8.0366 0.5792 2.1796 11 6 7.6025 1.3362 1.0465 12 1 7.8681 0.8066 0.1316 13 6 8.2805 2.7077 1.0581 14 6 6.0834 1.5153 1.1108 15 8 3.9728 0.5693 -1.2398 16 6 4.2420 1.3916 -2.2660 17 8 4.1170 2.5859 -2.1321 18 6 4.7004 0.8252 -3.5851 19 16 4.9803 2.1759 -4.7572 20 6 5.4917 1.2546 -6.1693 21 1 5.5499 0.1773 -6.1192 22 6 5.8198 1.9134 -7.3461 23 7 5.7485 3.2262 -7.4073 24 14 6.3628 0.9367 -8.8430 25 1 5.1751 0.5857 -9.6625 26 1 7.2999 1.7544 -9.6544 27 1 7.0448 -0.3066 -8.4022 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6571 0.7857 2.1141 34 1 3.5283 -0.6696 1.0975 35 1 5.6470 -0.0118 3.2587 36 1 5.4429 -1.5392 2.3661 37 1 7.7910 -1.2181 3.1713 38 1 7.6926 -1.3031 1.3957 39 1 9.3620 2.5788 1.0158 40 1 7.9489 3.2843 0.1946 41 1 8.0133 3.2374 1.9725 42 1 5.7410 2.0423 0.2202 43 1 5.8220 2.0915 1.9984 44 1 5.6284 0.2722 -3.4403 45 1 3.9357 0.1552 -3.9782 46 1 5.9774 3.6867 -8.2298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842961580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:52 Heat of formation + Delta-G solvation = -167.921333 kcal Electronic energy + Delta-G solvation = -27600.201465 eV Core-core repulsion = 23616.928795 eV Total energy + Delta-G solvation = -3983.272671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50540 -39.59204 -38.06435 -36.53054 -35.48261 -32.93964 -32.47012 -31.81206 -29.43693 -28.70127 -27.10707 -26.31960 -25.53807 -24.56125 -22.65652 -21.92253 -20.78157 -20.09917 -18.01070 -17.34568 -16.95054 -16.61070 -16.34792 -16.19253 -15.72042 -15.55161 -15.29552 -15.06678 -14.83445 -14.81580 -14.44646 -14.08420 -13.94948 -13.17248 -13.02908 -12.85485 -12.67196 -12.63978 -12.36031 -12.25604 -12.06543 -11.98525 -11.78844 -11.60107 -11.30642 -11.08688 -11.05408 -10.87482 -10.78826 -10.59521 -10.35011 -10.01411 -9.89131 -9.84254 -9.72107 -9.09941 -8.55785 -8.33993 -6.58138 -6.25970 -3.98007 2.64961 2.68914 3.21695 3.25027 3.29735 3.45383 3.52254 3.60819 3.64620 4.16573 4.41523 4.67228 4.69498 4.79098 4.90030 4.91910 4.96896 5.02023 5.04715 5.10127 5.12657 5.17892 5.20617 5.26291 5.32532 5.42584 5.43412 5.47468 5.48975 5.57050 5.61860 5.68033 5.77380 5.79129 5.83855 5.93947 6.07635 6.14547 6.68556 6.73027 6.77891 6.92887 7.05802 7.57325 8.22002 8.32269 9.19893 10.81543 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.003457 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.528162 B = 8096.855454 C = 9960.822482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.045 3.955 4 C 0.092 3.908 5 H 0.099 0.901 6 C 0.065 3.935 7 N -0.530 5.530 8 C 0.020 3.980 9 C 0.065 3.935 10 O -0.385 6.385 11 C 0.090 3.910 12 H 0.071 0.929 13 C -0.146 4.146 14 C 0.016 3.984 15 O -0.328 6.328 16 C 0.478 3.522 17 O -0.497 6.497 18 C -0.127 4.127 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.076 0.924 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.920 3.080 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.042 0.958 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -6.499 21.341 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.032 4.032 4 C 0.036 3.964 5 H 0.117 0.883 6 C -0.062 4.062 7 N -0.255 5.255 8 C -0.108 4.108 9 C -0.012 4.012 10 O -0.304 6.304 11 C 0.033 3.967 12 H 0.089 0.911 13 C -0.203 4.203 14 C -0.112 4.112 15 O -0.245 6.245 16 C 0.320 3.680 17 O -0.383 6.383 18 C -0.275 4.275 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.094 0.906 22 C -0.134 4.134 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.643 -5.220 21.159 22.096 hybrid contribution -0.390 -1.228 -0.552 1.402 sum -4.033 -6.448 20.608 21.966 Atomic orbital electron populations 1.22761 0.81063 1.02839 0.99980 1.87938 1.19591 1.26853 1.95395 1.22970 0.92900 0.85723 1.01633 1.22798 0.92093 0.98331 0.83152 0.88332 1.22164 0.87445 1.02119 0.94511 1.62197 1.05801 1.17198 1.40291 1.22782 0.97151 0.99520 0.91392 1.22618 0.90939 0.85322 1.02368 1.87969 1.66902 1.28319 1.47208 1.22156 0.91856 0.93327 0.89391 0.91108 1.21766 1.01324 0.94387 1.02849 1.22954 0.95692 0.90580 1.01962 1.86726 1.77329 1.40303 1.20109 1.23382 0.73419 0.85534 0.85629 1.90638 1.48533 1.16547 1.82616 1.23276 1.04844 1.06481 0.92924 1.85339 1.87689 1.05491 1.04770 1.22848 1.52665 0.95217 0.97558 0.90615 1.24985 0.94849 0.95136 0.98462 1.70009 1.45453 1.07062 1.27813 0.86139 0.78582 0.79547 0.81098 1.20217 1.20723 1.19550 0.93868 0.89487 0.94262 0.91839 0.91821 0.93097 0.88165 0.94128 0.89442 0.88558 0.92062 0.91421 0.90372 0.92080 0.89304 0.93974 0.87918 0.88054 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.64 9.78 -38.80 -0.38 -5.02 16 3 C 0.05 0.54 5.79 37.16 0.22 0.75 16 4 C 0.09 1.22 1.80 -26.73 -0.05 1.18 16 5 H 0.10 1.35 5.31 -51.93 -0.28 1.08 16 6 C 0.07 0.73 4.64 -3.82 -0.02 0.71 16 7 N -0.53 -6.31 4.70 -234.30 -1.10 -7.41 16 8 C 0.02 0.19 5.66 -3.71 -0.02 0.17 16 9 C 0.06 0.63 7.01 37.21 0.26 0.89 16 10 O -0.38 -4.71 10.47 -35.23 -0.37 -5.08 16 11 C 0.09 1.11 3.42 -26.68 -0.09 1.02 16 12 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 13 C -0.15 -1.57 9.57 37.16 0.36 -1.22 16 14 C 0.02 0.20 4.43 -3.71 -0.02 0.18 16 15 O -0.33 -5.42 9.71 -42.02 -0.41 -5.83 16 16 C 0.48 9.20 7.95 36.01 0.29 9.49 16 17 O -0.50 -10.51 15.08 -18.75 -0.28 -10.80 16 18 C -0.13 -2.65 6.27 36.01 0.23 -2.42 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 20 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 21 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 22 C 0.08 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 24 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 1.16 7.54 -51.93 -0.39 0.77 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.23 6.07 -51.93 -0.32 0.91 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 45 H 0.10 2.00 8.14 -51.92 -0.42 1.57 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -33.02 390.41 -8.41 -41.43 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.71 Total: 0.03 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 2.46 Total: -0.62 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: -0.37 Total: -32.41 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.44 Total: -26.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.02 -8.41 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842961580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.488 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds