Wall clock time and date at job start Tue Mar 31 2020 18:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00444 * 2 1 4 4 C 1.52997 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47503 * 184.99682 * 4 3 2 6 6 C 1.52999 * 109.47375 * 305.00142 * 4 3 2 7 7 N 1.46902 * 109.47324 * 179.52426 * 6 4 3 8 8 C 1.47012 * 111.00108 * 176.13916 * 7 6 4 9 9 C 1.53094 * 109.26037 * 177.61026 * 8 7 6 10 10 O 1.43016 * 109.25624 * 56.85012 * 9 8 7 11 11 C 1.43020 * 113.74041 * 301.33113 * 10 9 8 12 12 H 1.09001 * 109.50259 * 298.73567 * 11 10 9 13 13 C 1.53001 * 109.50768 * 178.64983 * 11 10 9 14 14 C 1.47023 * 110.99722 * 52.50844 * 7 6 4 15 15 O 1.45202 * 109.47114 * 65.00047 * 4 3 2 16 16 C 1.34229 * 116.99921 * 89.99574 * 15 4 3 17 17 O 1.20824 * 120.00345 * 0.02562 * 16 15 4 18 18 C 1.50699 * 119.99865 * 180.02562 * 16 15 4 19 19 S 1.81007 * 109.47260 * 180.02562 * 18 16 15 20 20 C 1.76194 * 100.00089 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99797 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46947 * 89.99914 * 24 22 20 26 26 H 1.48500 * 109.47041 * 209.99893 * 24 22 20 27 27 H 1.48498 * 109.47426 * 330.00048 * 24 22 20 28 28 H 1.09002 * 109.46809 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47165 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.46604 * 59.99780 * 3 2 1 32 32 H 1.08998 * 109.47183 * 300.00000 * 3 2 1 33 33 H 1.08998 * 109.47069 * 299.52882 * 6 4 3 34 34 H 1.09004 * 109.47128 * 59.52372 * 6 4 3 35 35 H 1.09006 * 109.50785 * 297.54725 * 8 7 6 36 36 H 1.09005 * 109.50438 * 57.67640 * 8 7 6 37 37 H 1.08993 * 109.50879 * 176.78101 * 9 8 7 38 38 H 1.08999 * 109.50769 * 296.87556 * 9 8 7 39 39 H 1.09000 * 109.47191 * 59.99839 * 13 11 10 40 40 H 1.08994 * 109.47229 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47066 * 300.00188 * 13 11 10 42 42 H 1.09004 * 109.50403 * 302.33002 * 14 7 6 43 43 H 1.08999 * 109.50300 * 62.45219 * 14 7 6 44 44 H 1.09000 * 109.47128 * 299.99967 * 18 16 15 45 45 H 1.08996 * 109.47348 * 60.00267 * 18 16 15 46 46 H 0.97006 * 120.00310 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1764 0.0902 6 6 3.9781 0.3196 1.1826 7 7 5.4417 0.1942 1.1766 8 6 5.9111 -0.5549 2.3512 9 6 7.4319 -0.7133 2.2745 10 8 8.0366 0.5792 2.1796 11 6 7.6025 1.3362 1.0465 12 1 7.8681 0.8066 0.1316 13 6 8.2805 2.7077 1.0581 14 6 6.0834 1.5153 1.1108 15 8 3.9728 0.5693 -1.2398 16 6 4.2420 1.3916 -2.2660 17 8 4.1170 2.5859 -2.1321 18 6 4.7004 0.8252 -3.5851 19 16 4.9803 2.1759 -4.7572 20 6 5.4917 1.2546 -6.1693 21 1 5.5499 0.1773 -6.1192 22 6 5.8198 1.9134 -7.3461 23 7 5.7485 3.2262 -7.4073 24 14 6.3628 0.9367 -8.8430 25 1 5.1751 0.5857 -9.6625 26 1 7.2999 1.7544 -9.6544 27 1 7.0448 -0.3066 -8.4022 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6571 0.7857 2.1141 34 1 3.5283 -0.6696 1.0975 35 1 5.6470 -0.0118 3.2587 36 1 5.4429 -1.5392 2.3661 37 1 7.7910 -1.2181 3.1713 38 1 7.6926 -1.3031 1.3957 39 1 9.3620 2.5788 1.0158 40 1 7.9489 3.2843 0.1946 41 1 8.0133 3.2374 1.9725 42 1 5.7410 2.0423 0.2202 43 1 5.8220 2.0915 1.9984 44 1 5.6284 0.2722 -3.4403 45 1 3.9357 0.1552 -3.9782 46 1 5.9774 3.6867 -8.2298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842961580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:51 Heat of formation + Delta-G solvation = -190.485587 kcal Electronic energy + Delta-G solvation = -27601.179925 eV Core-core repulsion = 23616.928795 eV Total energy + Delta-G solvation = -3984.251130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78276 -40.61753 -39.06706 -37.65631 -36.63498 -34.60862 -33.81068 -32.88619 -31.01664 -29.55305 -27.97010 -27.71100 -27.12396 -25.45337 -23.62226 -23.13084 -21.81156 -21.18143 -19.92516 -18.83514 -17.94660 -17.66699 -17.38359 -17.22695 -16.92130 -16.87414 -16.52730 -16.39552 -16.08292 -15.87482 -15.71619 -15.41906 -14.86035 -14.61449 -14.42221 -14.09357 -13.81567 -13.66802 -13.32830 -13.28873 -13.19434 -13.14721 -12.90016 -12.86811 -12.80223 -12.64867 -12.40235 -12.16434 -11.83576 -11.75574 -11.66501 -11.52216 -11.41646 -11.15621 -10.72712 -10.63954 -10.38261 -9.41972 -8.72277 -8.37249 -6.16316 1.02898 1.14667 1.41011 1.42947 1.55095 1.89345 2.24176 2.59930 2.70808 2.79583 2.97849 3.26359 3.46385 3.69561 3.75481 3.82128 3.93118 4.00108 4.06979 4.14290 4.16687 4.22781 4.28388 4.36638 4.42620 4.44538 4.50626 4.52124 4.56929 4.59949 4.63338 4.69859 4.81060 4.84330 4.85720 4.93069 5.04210 5.19982 5.33260 5.41409 5.84918 5.90788 6.08360 6.18260 6.18399 6.73099 7.04743 8.71948 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.003457 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.528162 B = 8096.855454 C = 9960.822482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.049 3.951 4 C 0.085 3.915 5 H 0.092 0.908 6 C 0.074 3.926 7 N -0.549 5.549 8 C 0.022 3.978 9 C 0.059 3.941 10 O -0.396 6.396 11 C 0.090 3.910 12 H 0.051 0.949 13 C -0.143 4.143 14 C 0.023 3.977 15 O -0.326 6.326 16 C 0.488 3.512 17 O -0.521 6.521 18 C -0.109 4.109 19 S -0.128 6.128 20 C -0.550 4.550 21 H 0.083 0.917 22 C 0.019 3.981 23 N -0.909 5.909 24 Si 0.997 3.003 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.260 1.260 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -8.298 22.677 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.029 4.029 4 C 0.030 3.970 5 H 0.110 0.890 6 C -0.053 4.053 7 N -0.275 5.275 8 C -0.105 4.105 9 C -0.018 4.018 10 O -0.315 6.315 11 C 0.032 3.968 12 H 0.070 0.930 13 C -0.200 4.200 14 C -0.105 4.105 15 O -0.242 6.242 16 C 0.331 3.669 17 O -0.410 6.410 18 C -0.257 4.257 19 S 0.099 5.901 20 C -0.698 4.698 21 H 0.101 0.899 22 C -0.186 4.186 23 N -0.545 5.545 24 Si 0.819 3.181 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.184 1.184 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.028 -7.041 22.524 23.940 hybrid contribution -0.335 -0.729 -0.813 1.142 sum -4.363 -7.770 21.711 23.469 Atomic orbital electron populations 1.22955 0.79410 1.04067 1.00735 1.87901 1.21417 1.26805 1.95544 1.22923 0.91808 0.85965 1.02172 1.23163 0.93257 0.98472 0.82097 0.88991 1.22132 0.87127 1.01831 0.94239 1.62191 1.06217 1.17094 1.41952 1.22836 0.96875 1.00083 0.90730 1.22839 0.91289 0.84341 1.03301 1.87953 1.67417 1.29321 1.46832 1.22108 0.92143 0.93729 0.88823 0.93045 1.21742 1.01441 0.93804 1.03052 1.22813 0.95535 0.90910 1.01267 1.86679 1.76905 1.39923 1.20714 1.22945 0.73062 0.85147 0.85790 1.90629 1.49712 1.17546 1.83076 1.23058 1.05987 1.04146 0.92530 1.85399 1.88042 1.09709 1.06964 1.23190 1.52865 0.95609 0.98125 0.89929 1.26064 0.94533 0.96188 1.01814 1.70152 1.46460 1.08991 1.28902 0.84973 0.78386 0.78127 0.76644 1.19247 1.20108 1.18353 0.94433 0.88095 0.92178 0.88639 0.93918 0.90537 0.88148 0.93203 0.87792 0.85910 0.92876 0.91052 0.90968 0.91124 0.91491 0.93052 0.86706 0.86740 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -9.03 9.78 -145.57 -1.42 -10.46 16 3 C 0.05 1.10 5.79 71.98 0.42 1.51 16 4 C 0.09 2.19 1.80 30.59 0.05 2.24 16 5 H 0.09 2.51 5.31 -2.39 -0.01 2.50 16 6 C 0.07 1.50 4.64 86.30 0.40 1.90 16 7 N -0.55 -12.26 4.70 -895.19 -4.21 -16.46 16 8 C 0.02 0.37 5.66 86.31 0.49 0.86 16 9 C 0.06 1.05 7.01 72.01 0.50 1.55 16 10 O -0.40 -9.26 10.47 -148.98 -1.56 -10.81 16 11 C 0.09 2.19 3.42 30.62 0.10 2.30 16 12 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 13 C -0.14 -3.08 9.57 71.98 0.69 -2.39 16 14 C 0.02 0.55 4.43 86.31 0.38 0.93 16 15 O -0.33 -10.67 9.71 -48.76 -0.47 -11.15 16 16 C 0.49 18.99 7.95 71.24 0.57 19.56 16 17 O -0.52 -22.66 15.08 21.97 0.33 -22.33 16 18 C -0.11 -4.56 6.27 71.24 0.45 -4.11 16 19 S -0.13 -6.99 20.57 -56.49 -1.16 -8.15 16 20 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.02 1.08 5.49 84.86 0.47 1.55 16 23 N -0.91 -54.79 13.22 21.65 0.29 -54.51 16 24 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 2.08 7.54 -2.38 -0.02 2.06 16 35 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.89 6.07 -2.39 -0.01 1.87 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 4.52 8.14 -2.40 -0.02 4.50 16 45 H 0.11 4.48 8.14 -2.40 -0.02 4.46 16 46 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -71.99 390.41 1.19 -70.81 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.95 Total: 20.82 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.41 Total: -3.07 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -3.92 Total: -70.97 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -3.13 Total: -54.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.16 Total: -8.15 kcal Total: -71.99 1.19 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842961580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.678 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds