Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 O 1.42898 * 109.47105 * 239.99300 * 2 1 3 5 5 C 1.35665 * 116.99865 * 84.03408 * 4 2 1 6 6 C 1.39071 * 119.88728 * 182.21433 * 5 4 2 7 7 C 1.37125 * 120.11790 * 179.76087 * 6 5 4 8 8 C 1.40042 * 119.87685 * 0.50788 * 7 6 5 9 9 C 1.46863 * 120.10860 * 179.76362 * 8 7 6 10 10 O 1.21297 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.40028 * 119.77469 * 359.74360 * 8 7 6 12 12 C 1.37119 * 119.88840 * 0.02562 * 11 8 7 13 13 C 1.50701 * 109.47086 * 119.99630 * 2 1 3 14 14 O 1.21283 * 120.00437 * 112.23246 * 13 2 1 15 15 N 1.34779 * 120.00039 * 292.23107 * 13 2 1 16 16 C 1.47290 * 125.79272 * 175.09586 * 15 13 2 17 17 C 1.54325 * 107.30671 * 178.92329 * 16 15 13 18 18 C 1.55155 * 102.93920 * 337.81767 * 17 16 15 19 19 O 1.42901 * 111.00349 * 277.42640 * 18 17 16 20 20 C 1.50707 * 111.03500 * 153.59218 * 18 17 16 21 21 H 1.08006 * 119.99463 * 247.78197 * 20 18 17 22 22 C 1.37866 * 120.00155 * 67.78268 * 20 18 17 23 23 N 1.31526 * 120.00229 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00152 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47243 * 60.00157 * 24 22 20 26 26 H 1.48502 * 109.47290 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47076 * 300.00273 * 24 22 20 28 28 C 1.47419 * 125.64894 * 355.09235 * 15 13 2 29 29 H 1.09007 * 109.46807 * 305.63313 * 1 2 3 30 30 H 1.08992 * 109.47281 * 65.63510 * 1 2 3 31 31 H 1.08999 * 109.47198 * 185.63777 * 1 2 3 32 32 H 1.08005 * 119.94276 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.05811 * 180.27640 * 7 6 5 34 34 H 1.07994 * 119.99517 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05910 * 180.02562 * 11 8 7 36 36 H 1.07991 * 119.94780 * 180.02562 * 12 11 8 37 37 H 1.09002 * 109.85750 * 59.50037 * 16 15 13 38 38 H 1.08995 * 110.00394 * 298.42935 * 16 15 13 39 39 H 1.09000 * 110.72039 * 219.45210 * 17 16 15 40 40 H 1.08997 * 110.71874 * 96.18392 * 17 16 15 41 41 H 0.96710 * 113.99903 * 292.19385 * 19 18 17 42 42 H 0.96991 * 119.99991 * 179.97438 * 23 22 20 43 43 H 1.09006 * 110.36372 * 85.26535 * 28 15 13 44 44 H 1.08998 * 110.36955 * 323.05287 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0932 0.0560 -2.3070 6 6 2.5053 -0.5509 -3.4885 7 6 2.5900 0.1811 -4.6449 8 6 2.2709 1.5446 -4.6324 9 6 2.3649 2.3346 -5.8668 10 8 2.7199 1.8063 -6.8994 11 6 1.8615 2.1520 -3.4389 12 6 1.7756 1.4100 -2.2891 13 6 2.0323 -0.7103 1.2305 14 8 2.6092 -1.7720 1.1250 15 7 1.8406 -0.1658 2.4484 16 6 2.1849 -0.7926 3.7361 17 6 1.8107 0.2092 4.8488 18 6 1.8008 1.5695 4.1027 19 8 3.1219 2.1030 3.9926 20 6 0.8796 2.5513 4.7800 21 1 -0.0259 2.8713 4.2860 22 6 1.1929 3.0409 6.0301 23 7 2.2955 2.6509 6.6319 24 14 0.0515 4.2584 6.8694 25 1 -1.2856 3.6387 7.0516 26 1 0.6100 4.6279 8.1948 27 1 -0.0776 5.4760 6.0292 28 6 1.2504 1.1587 2.7142 29 1 -0.3633 0.5988 0.8353 30 1 -0.3633 0.4239 -0.9361 31 1 -0.3633 -1.0227 0.1010 32 1 2.7549 -1.6017 -3.4962 33 1 2.9059 -0.2923 -5.5628 34 1 2.1180 3.3859 -5.8552 35 1 1.6139 3.2032 -3.4241 36 1 1.4595 1.8774 -1.3683 37 1 3.2537 -1.0035 3.7712 38 1 1.6205 -1.7163 3.8639 39 1 2.5627 0.2076 5.6379 40 1 0.8243 -0.0155 5.2543 41 1 3.5082 2.3742 4.8367 42 1 2.5160 2.9956 7.5113 43 1 0.1629 1.0906 2.7422 44 1 1.5656 1.8738 1.9544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = -121.746392 kcal Electronic energy + Delta-G solvation = -28451.368078 eV Core-core repulsion = 24334.653751 eV Total energy + Delta-G solvation = -4116.714326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.88271 -39.75119 -39.00626 -37.59509 -36.90429 -34.42663 -32.61029 -32.27295 -31.31653 -30.54486 -29.65205 -28.38975 -25.58903 -25.15371 -24.12135 -23.26677 -22.05692 -20.94560 -20.00219 -19.10539 -18.60703 -17.43985 -17.12312 -16.64784 -16.32975 -15.86231 -15.50591 -15.18221 -15.09874 -14.97692 -14.46768 -14.41461 -14.20504 -13.74087 -13.60711 -13.52725 -13.26757 -12.86314 -12.75119 -12.67310 -12.32098 -12.13812 -12.04891 -11.83657 -11.46519 -11.33709 -11.31500 -10.96548 -10.89883 -10.72275 -10.60740 -10.17517 -10.04711 -9.72517 -9.44308 -9.39281 -8.81195 -8.48660 -8.35905 -8.18642 -6.42612 -4.52075 0.44665 1.08507 2.21341 2.51487 2.79233 3.11489 3.18269 3.19446 3.53356 3.60539 4.02895 4.13458 4.37377 4.49387 4.55206 4.72784 4.79327 4.83122 4.89472 5.01928 5.17052 5.28564 5.39197 5.42762 5.49755 5.65956 5.69233 5.79199 5.83848 5.88613 5.92963 5.99673 6.09277 6.10652 6.15879 6.35114 6.40353 6.74455 6.80501 7.10104 7.16139 7.18691 7.19980 7.59734 7.79920 7.87614 8.38898 8.49299 9.17409 9.32179 10.65024 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002636 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.046372 B =10617.600218 C =11660.084866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 H 0.102 0.898 4 O -0.279 6.279 5 C 0.175 3.825 6 C -0.168 4.168 7 C -0.018 4.018 8 C -0.244 4.244 9 C 0.388 3.612 10 O -0.472 6.472 11 C -0.021 4.021 12 C -0.230 4.230 13 C 0.530 3.470 14 O -0.535 6.535 15 N -0.601 5.601 16 C 0.111 3.889 17 C -0.140 4.140 18 C 0.251 3.749 19 O -0.585 6.585 20 C -0.540 4.540 21 H 0.066 0.934 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.106 3.894 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.388 0.612 42 H 0.272 0.728 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -0.174 -13.881 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 H 0.119 0.881 4 O -0.190 6.190 5 C 0.128 3.872 6 C -0.187 4.187 7 C -0.036 4.036 8 C -0.245 4.245 9 C 0.248 3.752 10 O -0.346 6.346 11 C -0.039 4.039 12 C -0.249 4.249 13 C 0.316 3.684 14 O -0.412 6.412 15 N -0.335 5.335 16 C -0.010 4.010 17 C -0.179 4.179 18 C 0.210 3.790 19 O -0.396 6.396 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.129 4.129 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.016 4.016 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.241 0.759 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.139 -1.379 -14.964 15.352 hybrid contribution -0.602 1.022 1.531 1.937 sum -3.742 -0.356 -13.432 13.948 Atomic orbital electron populations 1.22318 0.92183 1.04531 1.04181 1.22299 0.96047 0.97316 0.83577 0.88052 1.86180 1.79367 1.37859 1.15597 1.19517 0.91104 0.90097 0.86518 1.20335 1.06649 1.01623 0.90070 1.21093 0.92306 0.92635 0.97548 1.20801 1.11188 0.95914 0.96632 1.23887 0.71941 0.93587 0.85826 1.90523 1.34837 1.75146 1.34113 1.21053 0.92431 0.99637 0.90808 1.21237 1.09607 0.93507 1.00515 1.19435 0.80260 0.85640 0.83034 1.90700 1.41970 1.22734 1.85842 1.48514 1.60530 1.19578 1.04859 1.22119 1.00003 0.96376 0.82527 1.23248 1.02058 0.96125 0.96439 1.19533 0.82302 0.89544 0.87594 1.86069 1.31324 1.84184 1.38035 1.21392 1.07684 1.26602 1.02171 0.91621 1.24997 0.95385 0.95895 0.96662 1.69547 1.24116 1.43748 1.16011 0.86445 0.80643 0.81182 0.78543 1.20003 1.21052 1.19949 1.22642 0.97231 0.81896 0.99861 0.89367 0.90736 0.90763 0.84400 0.84386 0.88168 0.84596 0.84286 0.92126 0.92647 0.89680 0.91231 0.75918 0.91829 0.90451 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.11 37.16 0.34 -1.63 16 2 C 0.07 0.95 2.03 -27.88 -0.06 0.89 16 3 H 0.10 1.29 5.22 -51.93 -0.27 1.02 16 4 O -0.28 -4.17 9.34 -38.48 -0.36 -4.53 16 5 C 0.18 2.17 6.53 -38.96 -0.25 1.92 16 6 C -0.17 -1.91 9.95 -39.68 -0.39 -2.30 16 7 C -0.02 -0.18 9.57 -39.31 -0.38 -0.56 16 8 C -0.24 -2.28 5.87 -105.06 -0.62 -2.90 16 9 C 0.39 3.28 11.44 34.22 0.39 3.67 16 10 O -0.47 -5.77 17.16 5.54 0.10 -5.68 16 11 C -0.02 -0.18 9.77 -39.32 -0.38 -0.56 16 12 C -0.23 -2.36 8.33 -39.67 -0.33 -2.69 16 13 C 0.53 9.67 7.19 -10.98 -0.08 9.59 16 14 O -0.54 -11.61 16.86 -14.23 -0.24 -11.85 16 15 N -0.60 -11.03 3.33 -170.31 -0.57 -11.60 16 16 C 0.11 2.11 6.89 -2.92 -0.02 2.09 16 17 C -0.14 -2.86 5.64 -24.90 -0.14 -3.00 16 18 C 0.25 5.46 0.89 -89.62 -0.08 5.38 16 19 O -0.59 -13.86 13.18 -35.23 -0.46 -14.32 16 20 C -0.54 -12.65 8.25 -34.44 -0.28 -12.94 16 21 H 0.07 1.49 7.77 -52.48 -0.41 1.08 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.90 -21.76 10.79 55.43 0.60 -21.16 16 24 Si 0.90 18.73 29.54 -169.99 -5.02 13.71 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 C 0.11 1.91 4.84 -2.53 -0.01 1.90 16 29 H 0.09 0.94 6.18 -51.92 -0.32 0.62 16 30 H 0.07 0.70 7.40 -51.93 -0.38 0.31 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.14 1.31 7.64 -52.49 -0.40 0.91 16 34 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.14 1.28 5.71 -52.49 -0.30 0.98 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.85 7.85 -51.93 -0.41 1.44 16 40 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 41 H 0.39 9.45 6.93 45.56 0.32 9.77 16 42 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 43 H 0.08 1.26 7.11 -51.93 -0.37 0.89 16 44 H 0.07 1.16 7.28 -51.93 -0.38 0.78 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -29.67 367.12 -7.83 -37.50 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.01 Total: 11.86 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.39 Total: 0.52 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.03 Total: -32.76 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.97 Total: -36.37 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.67 -7.83 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.242 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds