Wall clock time and date at job start Tue Mar 31 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 O 1.42898 * 109.47105 * 239.99300 * 2 1 3 5 5 C 1.35665 * 116.99865 * 84.03408 * 4 2 1 6 6 C 1.39071 * 119.88728 * 182.21433 * 5 4 2 7 7 C 1.37125 * 120.11790 * 179.76087 * 6 5 4 8 8 C 1.40042 * 119.87685 * 0.50788 * 7 6 5 9 9 C 1.46863 * 120.10860 * 179.76362 * 8 7 6 10 10 O 1.21297 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.40028 * 119.77469 * 359.74360 * 8 7 6 12 12 C 1.37119 * 119.88840 * 0.02562 * 11 8 7 13 13 C 1.50701 * 109.47086 * 119.99630 * 2 1 3 14 14 O 1.21283 * 120.00437 * 112.23246 * 13 2 1 15 15 N 1.34779 * 120.00039 * 292.23107 * 13 2 1 16 16 C 1.47290 * 125.79272 * 175.09586 * 15 13 2 17 17 C 1.54325 * 107.30671 * 178.92329 * 16 15 13 18 18 C 1.55155 * 102.93920 * 337.81767 * 17 16 15 19 19 O 1.42901 * 111.00349 * 277.42640 * 18 17 16 20 20 C 1.50707 * 111.03500 * 153.59218 * 18 17 16 21 21 H 1.08006 * 119.99463 * 247.78197 * 20 18 17 22 22 C 1.37866 * 120.00155 * 67.78268 * 20 18 17 23 23 N 1.31526 * 120.00229 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00152 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47243 * 60.00157 * 24 22 20 26 26 H 1.48502 * 109.47290 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47076 * 300.00273 * 24 22 20 28 28 C 1.47419 * 125.64894 * 355.09235 * 15 13 2 29 29 H 1.09007 * 109.46807 * 305.63313 * 1 2 3 30 30 H 1.08992 * 109.47281 * 65.63510 * 1 2 3 31 31 H 1.08999 * 109.47198 * 185.63777 * 1 2 3 32 32 H 1.08005 * 119.94276 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.05811 * 180.27640 * 7 6 5 34 34 H 1.07994 * 119.99517 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05910 * 180.02562 * 11 8 7 36 36 H 1.07991 * 119.94780 * 180.02562 * 12 11 8 37 37 H 1.09002 * 109.85750 * 59.50037 * 16 15 13 38 38 H 1.08995 * 110.00394 * 298.42935 * 16 15 13 39 39 H 1.09000 * 110.72039 * 219.45210 * 17 16 15 40 40 H 1.08997 * 110.71874 * 96.18392 * 17 16 15 41 41 H 0.96710 * 113.99903 * 292.19385 * 19 18 17 42 42 H 0.96991 * 119.99991 * 179.97438 * 23 22 20 43 43 H 1.09006 * 110.36372 * 85.26535 * 28 15 13 44 44 H 1.08998 * 110.36955 * 323.05287 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0932 0.0560 -2.3070 6 6 2.5053 -0.5509 -3.4885 7 6 2.5900 0.1811 -4.6449 8 6 2.2709 1.5446 -4.6324 9 6 2.3649 2.3346 -5.8668 10 8 2.7199 1.8063 -6.8994 11 6 1.8615 2.1520 -3.4389 12 6 1.7756 1.4100 -2.2891 13 6 2.0323 -0.7103 1.2305 14 8 2.6092 -1.7720 1.1250 15 7 1.8406 -0.1658 2.4484 16 6 2.1849 -0.7926 3.7361 17 6 1.8107 0.2092 4.8488 18 6 1.8008 1.5695 4.1027 19 8 3.1219 2.1030 3.9926 20 6 0.8796 2.5513 4.7800 21 1 -0.0259 2.8713 4.2860 22 6 1.1929 3.0409 6.0301 23 7 2.2955 2.6509 6.6319 24 14 0.0515 4.2584 6.8694 25 1 -1.2856 3.6387 7.0516 26 1 0.6100 4.6279 8.1948 27 1 -0.0776 5.4760 6.0292 28 6 1.2504 1.1587 2.7142 29 1 -0.3633 0.5988 0.8353 30 1 -0.3633 0.4239 -0.9361 31 1 -0.3633 -1.0227 0.1010 32 1 2.7549 -1.6017 -3.4962 33 1 2.9059 -0.2923 -5.5628 34 1 2.1180 3.3859 -5.8552 35 1 1.6139 3.2032 -3.4241 36 1 1.4595 1.8774 -1.3683 37 1 3.2537 -1.0035 3.7712 38 1 1.6205 -1.7163 3.8639 39 1 2.5627 0.2076 5.6379 40 1 0.8243 -0.0155 5.2543 41 1 3.5082 2.3742 4.8367 42 1 2.5160 2.9956 7.5113 43 1 0.1629 1.0906 2.7422 44 1 1.5656 1.8738 1.9544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:57 Heat of formation + Delta-G solvation = -140.471509 kcal Electronic energy + Delta-G solvation = -28452.180060 eV Core-core repulsion = 24334.653751 eV Total energy + Delta-G solvation = -4117.526308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91641 -40.89968 -39.99912 -38.97204 -37.98107 -36.09165 -34.08730 -33.68221 -32.17670 -31.47283 -31.01080 -29.95027 -27.04660 -26.30641 -25.16290 -24.12167 -23.26982 -21.85273 -21.63242 -20.41245 -19.57167 -19.11911 -18.14397 -17.67310 -17.54240 -17.02654 -16.91325 -16.59045 -16.34646 -15.98210 -15.81483 -15.27382 -15.25068 -15.01491 -14.85531 -14.51326 -14.43737 -14.19074 -13.90543 -13.69160 -13.60951 -13.43271 -13.23442 -13.17700 -12.97750 -12.82319 -12.57075 -12.44545 -12.26936 -12.19582 -11.88803 -11.78262 -11.32848 -10.91979 -10.74993 -10.58692 -10.15469 -10.12815 -9.69815 -9.33480 -8.20646 -6.35440 -0.30838 0.33659 1.33890 1.41999 1.49265 1.51215 1.52027 1.57634 2.35969 2.45579 2.79577 3.05132 3.23519 3.43554 3.56293 3.74417 3.77702 3.80778 3.88368 4.06069 4.17106 4.22716 4.28764 4.34722 4.43956 4.57056 4.58752 4.61635 4.62661 4.66517 4.84223 4.98620 5.05324 5.13424 5.16283 5.22544 5.23870 5.35378 5.44237 5.50143 5.62543 5.81205 6.04827 6.19591 6.43337 6.55828 6.70730 6.95862 7.35968 7.45808 8.85439 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002636 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.046372 B =10617.600218 C =11660.084866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 H 0.119 0.881 4 O -0.307 6.307 5 C 0.150 3.850 6 C -0.182 4.182 7 C -0.027 4.027 8 C -0.248 4.248 9 C 0.397 3.603 10 O -0.515 6.515 11 C -0.007 4.007 12 C -0.233 4.233 13 C 0.524 3.476 14 O -0.578 6.578 15 N -0.601 5.601 16 C 0.114 3.886 17 C -0.130 4.130 18 C 0.232 3.768 19 O -0.596 6.596 20 C -0.551 4.551 21 H 0.074 0.926 22 C 0.031 3.969 23 N -0.916 5.916 24 Si 0.961 3.039 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.271 1.271 28 C 0.114 3.886 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.381 0.619 42 H 0.270 0.730 43 H 0.102 0.898 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 2.199 -15.107 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 H 0.136 0.864 4 O -0.219 6.219 5 C 0.103 3.897 6 C -0.201 4.201 7 C -0.046 4.046 8 C -0.250 4.250 9 C 0.259 3.741 10 O -0.391 6.391 11 C -0.025 4.025 12 C -0.251 4.251 13 C 0.312 3.688 14 O -0.459 6.459 15 N -0.334 5.334 16 C -0.008 4.008 17 C -0.169 4.169 18 C 0.191 3.809 19 O -0.406 6.406 20 C -0.590 4.590 21 H 0.092 0.908 22 C -0.170 4.170 23 N -0.556 5.556 24 Si 0.787 3.213 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.197 1.197 28 C -0.008 4.008 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.197 0.803 36 H 0.171 0.829 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.022 1.010 -16.202 16.992 hybrid contribution 0.025 0.284 1.878 1.899 sum -4.996 1.295 -14.324 15.226 Atomic orbital electron populations 1.22314 0.89806 1.04443 1.05884 1.22281 0.97606 0.96947 0.81652 0.86381 1.86130 1.80309 1.39101 1.16390 1.19743 0.92869 0.91248 0.85791 1.20404 1.07353 1.01769 0.90529 1.21214 0.92595 0.93643 0.97121 1.21149 1.10391 0.95508 0.97909 1.24565 0.69976 0.95225 0.84299 1.90529 1.36899 1.76236 1.35474 1.21468 0.90370 1.01359 0.89308 1.21464 1.09273 0.92518 1.01860 1.20255 0.79247 0.85285 0.83970 1.90672 1.43881 1.24804 1.86494 1.48543 1.60431 1.19649 1.04788 1.22000 0.99351 0.96624 0.82802 1.23061 1.01368 0.96223 0.96213 1.19838 0.81388 0.89610 0.90037 1.86064 1.32454 1.84414 1.37637 1.21714 1.08106 1.26778 1.02358 0.90804 1.25671 0.96517 0.97362 0.97407 1.69649 1.25266 1.44613 1.16078 0.85562 0.79106 0.79381 0.77271 1.19518 1.21659 1.19657 1.22635 0.98306 0.81731 0.98084 0.88295 0.88359 0.91685 0.84951 0.84409 0.82900 0.80343 0.82899 0.93597 0.91335 0.91764 0.91080 0.76755 0.92089 0.88060 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.11 71.98 0.66 -2.69 16 2 C 0.07 1.98 2.03 29.85 0.06 2.04 16 3 H 0.12 2.70 5.22 -2.39 -0.01 2.69 16 4 O -0.31 -9.07 9.34 -70.89 -0.66 -9.74 16 5 C 0.15 3.58 6.53 22.67 0.15 3.72 16 6 C -0.18 -4.15 9.95 22.21 0.22 -3.93 16 7 C -0.03 -0.55 9.57 22.45 0.21 -0.33 16 8 C -0.25 -3.97 5.87 -20.15 -0.12 -4.09 16 9 C 0.40 5.41 11.44 70.08 0.80 6.21 16 10 O -0.51 -11.76 17.16 -3.08 -0.05 -11.81 16 11 C -0.01 -0.09 9.77 22.44 0.22 0.13 16 12 C -0.23 -4.09 8.33 22.21 0.18 -3.90 16 13 C 0.52 18.87 7.19 87.66 0.63 19.50 16 14 O -0.58 -25.56 16.86 15.88 0.27 -25.29 16 15 N -0.60 -21.51 3.33 -811.12 -2.71 -24.22 16 16 C 0.11 4.34 6.89 86.68 0.60 4.94 16 17 C -0.13 -5.31 5.64 31.78 0.18 -5.13 16 18 C 0.23 9.89 0.89 -10.15 -0.01 9.88 16 19 O -0.60 -28.21 13.18 -148.98 -1.96 -30.17 16 20 C -0.55 -25.07 8.25 25.60 0.21 -24.86 16 21 H 0.07 3.16 7.77 -2.91 -0.02 3.14 16 22 C 0.03 1.45 5.30 84.65 0.45 1.90 16 23 N -0.92 -44.73 10.79 21.45 0.23 -44.50 16 24 Si 0.96 37.57 29.54 68.60 2.03 39.60 16 25 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 28 C 0.11 3.88 4.84 86.86 0.42 4.30 16 29 H 0.10 1.75 6.18 -2.38 -0.01 1.74 16 30 H 0.10 1.51 7.40 -2.39 -0.02 1.49 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.14 2.66 7.64 -2.91 -0.02 2.63 16 34 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.15 2.20 5.71 -2.92 -0.02 2.19 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.87 7.85 -2.39 -0.02 2.85 16 40 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 41 H 0.38 18.90 6.93 -74.05 -0.51 18.39 16 42 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 43 H 0.10 2.98 7.11 -2.38 -0.02 2.96 16 44 H 0.08 2.59 7.28 -2.39 -0.02 2.57 16 Total: -1.00 -65.84 367.12 2.54 -63.30 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.53 Total: 35.15 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.86 Total: 7.68 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -2.47 Total: -68.72 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -2.41 Total: -77.01 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -65.84 2.54 -63.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.167 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds