Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47307 * 2 1 4 4 O 1.42904 * 109.46887 * 120.00138 * 2 1 3 5 5 C 1.35667 * 116.99494 * 276.25076 * 4 2 1 6 6 C 1.39075 * 119.88759 * 355.56422 * 5 4 2 7 7 C 1.37118 * 120.11969 * 179.76341 * 6 5 4 8 8 C 1.40040 * 119.87705 * 0.51153 * 7 6 5 9 9 C 1.46860 * 120.11228 * 179.76087 * 8 7 6 10 10 O 1.21293 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.40036 * 119.77588 * 359.74585 * 8 7 6 12 12 C 1.37120 * 119.88277 * 359.97438 * 11 8 7 13 13 C 1.50700 * 109.46869 * 239.99474 * 2 1 3 14 14 O 1.21282 * 119.99793 * 250.07687 * 13 2 1 15 15 N 1.34777 * 120.00077 * 70.07807 * 13 2 1 16 16 C 1.47422 * 125.65117 * 185.02031 * 15 13 2 17 17 C 1.54910 * 104.83478 * 204.09136 * 16 15 13 18 18 C 1.55161 * 101.57837 * 322.99076 * 17 16 15 19 19 O 1.42902 * 110.71821 * 277.13555 * 18 17 16 20 20 C 1.50700 * 110.71763 * 154.04343 * 18 17 16 21 21 H 1.07997 * 119.99513 * 238.22955 * 20 18 17 22 22 C 1.37871 * 120.00034 * 58.23530 * 20 18 17 23 23 N 1.31518 * 120.00250 * 4.81635 * 22 20 18 24 24 Si 1.86802 * 119.99902 * 184.82034 * 22 20 18 25 25 H 1.48502 * 109.47168 * 94.99622 * 24 22 20 26 26 H 1.48498 * 109.47285 * 214.99574 * 24 22 20 27 27 H 1.48497 * 109.47035 * 334.99814 * 24 22 20 28 28 C 1.47027 * 125.64599 * 4.70711 * 15 13 2 29 29 H 1.09007 * 109.47141 * 294.86597 * 1 2 3 30 30 H 1.09004 * 109.47039 * 54.86091 * 1 2 3 31 31 H 1.09002 * 109.47346 * 174.86409 * 1 2 3 32 32 H 1.07999 * 119.94063 * 0.02562 * 6 5 4 33 33 H 1.07994 * 120.06579 * 180.27319 * 7 6 5 34 34 H 1.07997 * 119.99928 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.06521 * 180.02562 * 11 8 7 36 36 H 1.08002 * 119.94473 * 179.97438 * 12 11 8 37 37 H 1.09002 * 110.36205 * 322.93433 * 16 15 13 38 38 H 1.09004 * 110.36707 * 85.13914 * 16 15 13 39 39 H 1.08996 * 111.00411 * 81.06221 * 17 16 15 40 40 H 1.08995 * 111.00470 * 204.91808 * 17 16 15 41 41 H 0.96701 * 114.00212 * 298.54981 * 19 18 17 42 42 H 0.96995 * 120.00043 * 180.02562 * 23 22 20 43 43 H 1.08996 * 109.88322 * 298.39853 * 28 15 13 44 44 H 1.09007 * 109.87420 * 59.56341 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0875 0.0547 2.3085 6 6 1.8033 1.4159 2.2837 7 6 1.8791 2.1557 3.4357 8 6 2.2539 1.5403 4.6365 9 6 2.3418 2.3288 5.8724 10 8 2.0901 3.5152 5.8541 11 6 2.5442 0.1705 4.6550 12 6 2.4598 -0.5613 3.4985 13 6 2.0323 -0.7105 -1.2304 14 8 2.5718 -1.7919 -1.1284 15 7 1.8819 -0.1443 -2.4442 16 6 2.2293 -0.7698 -3.7331 17 6 2.4678 0.4178 -4.6988 18 6 1.3846 1.4242 -4.2283 19 8 0.1197 1.1183 -4.8187 20 6 1.7939 2.8380 -4.5519 21 1 1.8826 3.5686 -3.7616 22 6 2.0549 3.1985 -5.8567 23 7 1.8556 2.3364 -6.8297 24 14 2.6916 4.9117 -6.2428 25 1 4.1739 4.8814 -6.3277 26 1 2.1307 5.3677 -7.5400 27 1 2.2765 5.8480 -5.1675 28 6 1.3383 1.1972 -2.7024 29 1 -0.3634 0.4322 0.9325 30 1 -0.3633 0.5915 -0.8404 31 1 -0.3634 -1.0235 -0.0920 32 1 1.5182 1.8903 1.3563 33 1 1.6539 3.2117 3.4163 34 1 2.6306 1.8523 6.7975 35 1 2.8333 -0.3089 5.5786 36 1 2.6838 -1.6178 3.5115 37 1 3.1365 -1.3657 -3.6333 38 1 1.4060 -1.3900 -4.0879 39 1 3.4678 0.8315 -4.5697 40 1 2.3006 0.1194 -5.7337 41 1 0.1138 1.1691 -5.7844 42 1 2.0396 2.5900 -7.7476 43 1 0.3091 1.2546 -2.3482 44 1 1.9482 1.9474 -2.1992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = -139.371054 kcal Electronic energy + Delta-G solvation = -28474.243393 eV Core-core repulsion = 24356.764804 eV Total energy + Delta-G solvation = -4117.478589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94166 -40.93316 -40.00837 -39.01777 -37.99632 -36.10687 -34.20596 -33.66720 -32.19291 -31.50586 -30.91248 -30.00596 -27.11389 -26.27453 -25.23625 -24.31473 -23.03508 -21.85231 -21.74709 -20.47318 -19.62075 -19.13066 -18.11845 -17.85150 -17.32986 -16.98829 -16.90549 -16.82459 -16.17727 -16.08515 -15.79520 -15.55514 -15.20475 -15.19445 -14.80719 -14.47736 -14.45757 -14.05438 -13.91226 -13.70388 -13.61966 -13.46740 -13.29556 -13.19860 -13.05586 -12.90585 -12.65719 -12.42044 -12.26986 -12.22835 -11.99767 -11.79008 -11.28098 -10.95895 -10.74810 -10.60116 -10.14913 -10.14423 -9.74379 -9.33820 -8.24024 -6.37819 -0.30594 0.33939 1.31716 1.36607 1.42590 1.47565 1.51516 1.54770 2.33572 2.42306 2.80016 3.02792 3.19224 3.43003 3.53395 3.70359 3.72478 3.78424 3.86618 4.03132 4.15476 4.19905 4.30016 4.30890 4.36618 4.50582 4.54560 4.58703 4.59377 4.71626 4.83402 4.97302 5.03688 5.12407 5.14987 5.19125 5.24104 5.34748 5.42544 5.48966 5.62920 5.76599 6.04850 6.17612 6.39022 6.56768 6.67741 6.90953 7.30788 7.40903 8.82104 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.002850 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.790337 B = 9823.598096 C =11264.774157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 H 0.115 0.885 4 O -0.301 6.301 5 C 0.148 3.852 6 C -0.235 4.235 7 C -0.029 4.029 8 C -0.248 4.248 9 C 0.396 3.604 10 O -0.516 6.516 11 C -0.007 4.007 12 C -0.176 4.176 13 C 0.528 3.472 14 O -0.571 6.571 15 N -0.603 5.603 16 C 0.110 3.890 17 C -0.125 4.125 18 C 0.235 3.765 19 O -0.591 6.591 20 C -0.557 4.557 21 H 0.064 0.936 22 C 0.036 3.964 23 N -0.907 5.907 24 Si 0.956 3.044 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.270 1.270 28 C 0.113 3.887 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.185 0.815 36 H 0.148 0.852 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.379 0.621 42 H 0.270 0.730 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -3.560 19.591 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.133 0.867 4 O -0.214 6.214 5 C 0.102 3.898 6 C -0.254 4.254 7 C -0.047 4.047 8 C -0.249 4.249 9 C 0.258 3.742 10 O -0.392 6.392 11 C -0.025 4.025 12 C -0.195 4.195 13 C 0.316 3.684 14 O -0.451 6.451 15 N -0.337 5.337 16 C -0.012 4.012 17 C -0.164 4.164 18 C 0.195 3.805 19 O -0.399 6.399 20 C -0.595 4.595 21 H 0.082 0.918 22 C -0.166 4.166 23 N -0.546 5.546 24 Si 0.782 3.218 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.009 4.009 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.202 0.798 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.229 0.771 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.235 -3.848 20.103 20.470 hybrid contribution 0.493 0.959 -1.866 2.155 sum 0.258 -2.889 18.237 18.466 Atomic orbital electron populations 1.22298 0.90460 1.04387 1.05380 1.22225 0.97193 0.97011 0.82094 0.86742 1.86137 1.80177 1.38891 1.16160 1.19819 0.93053 0.90517 0.86455 1.21275 1.10095 0.93155 1.00845 1.21232 0.91900 1.00124 0.91475 1.21170 1.10526 0.96431 0.96818 1.24601 0.69905 0.87000 0.92657 1.90540 1.39145 1.20432 1.89132 1.21471 0.91075 0.91389 0.98569 1.20633 1.06702 1.02225 0.89915 1.20140 0.79012 0.85470 0.83783 1.90670 1.44938 1.23163 1.86322 1.48519 1.61876 1.17971 1.05287 1.22312 0.99953 0.96454 0.82477 1.23105 1.00061 0.94783 0.98408 1.19619 0.81118 0.92205 0.87575 1.86104 1.34923 1.92863 1.26019 1.21742 1.47623 0.96335 0.93817 0.91801 1.25595 0.94282 1.00626 0.96091 1.69777 1.48169 1.36314 1.00361 0.85576 0.78292 0.80330 0.77609 1.20511 1.21030 1.19406 1.22287 0.99110 0.82032 0.97444 0.88696 0.89073 0.91421 0.84202 0.85047 0.82683 0.79762 0.83453 0.91392 0.91636 0.92595 0.90487 0.77100 0.92101 0.89965 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.18 71.98 0.66 -3.22 16 2 C 0.07 2.06 2.05 29.85 0.06 2.12 16 3 H 0.12 2.80 5.66 -2.39 -0.01 2.79 16 4 O -0.30 -8.70 9.34 -71.00 -0.66 -9.36 16 5 C 0.15 3.42 6.51 22.67 0.15 3.57 16 6 C -0.24 -5.00 8.39 22.21 0.19 -4.81 16 7 C -0.03 -0.58 9.57 22.44 0.21 -0.36 16 8 C -0.25 -3.85 5.87 -20.15 -0.12 -3.97 16 9 C 0.40 5.24 11.44 70.08 0.80 6.04 16 10 O -0.52 -11.91 17.16 -3.07 -0.05 -11.96 16 11 C -0.01 -0.09 9.77 22.44 0.22 0.13 16 12 C -0.18 -3.12 9.95 22.21 0.22 -2.90 16 13 C 0.53 19.03 7.17 87.66 0.63 19.65 16 14 O -0.57 -24.55 16.76 15.81 0.26 -24.29 16 15 N -0.60 -22.11 3.33 -811.76 -2.70 -24.81 16 16 C 0.11 4.22 6.92 86.86 0.60 4.82 16 17 C -0.12 -5.29 5.41 31.99 0.17 -5.12 16 18 C 0.23 10.32 0.85 -10.35 -0.01 10.31 16 19 O -0.59 -27.25 13.06 -148.98 -1.95 -29.20 16 20 C -0.56 -26.75 8.22 25.60 0.21 -26.54 16 21 H 0.06 3.00 7.62 -2.91 -0.02 2.98 16 22 C 0.04 1.73 5.25 84.65 0.44 2.17 16 23 N -0.91 -44.73 10.69 21.45 0.23 -44.50 16 24 Si 0.96 39.27 29.54 68.60 2.03 41.30 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 C 0.11 4.13 5.52 86.73 0.48 4.61 16 29 H 0.09 1.80 7.48 -2.38 -0.02 1.78 16 30 H 0.09 2.08 5.77 -2.39 -0.01 2.06 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.14 2.77 5.75 -2.91 -0.02 2.75 16 33 H 0.13 2.64 7.64 -2.91 -0.02 2.62 16 34 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 35 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.07 2.56 7.99 -2.39 -0.02 2.54 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.06 2.46 8.04 -2.39 -0.02 2.45 16 40 H 0.08 3.45 7.50 -2.39 -0.02 3.43 16 41 H 0.38 18.04 7.55 -74.06 -0.56 17.48 16 42 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 43 H 0.08 2.77 5.91 -2.39 -0.01 2.75 16 44 H 0.09 2.92 7.65 -2.38 -0.02 2.90 16 Total: -1.00 -65.00 366.61 2.57 -62.43 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.49 Total: 33.86 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.92 Total: 6.52 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -2.47 Total: -69.31 kcal Atomic # 8 Polarization: -72.41 SS G_CDS: -2.40 Total: -74.81 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -65.00 2.57 -62.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.939 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds