Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47517 * 2 1 4 4 O 1.42900 * 109.46967 * 119.99659 * 2 1 3 5 5 C 1.35666 * 117.00248 * 275.38649 * 4 2 1 6 6 C 1.39080 * 119.88407 * 5.09180 * 5 4 2 7 7 C 1.37117 * 120.11565 * 179.72076 * 6 5 4 8 8 C 1.40029 * 119.88181 * 0.52706 * 7 6 5 9 9 C 1.46860 * 120.11609 * 179.72800 * 8 7 6 10 10 O 1.21295 * 120.00411 * 180.02562 * 9 8 7 11 11 C 1.40042 * 119.77440 * 359.74271 * 8 7 6 12 12 C 1.37118 * 119.88017 * 0.02562 * 11 8 7 13 13 C 1.50697 * 109.47002 * 239.99550 * 2 1 3 14 14 O 1.21291 * 120.00071 * 244.99716 * 13 2 1 15 15 N 1.34777 * 119.99881 * 65.00519 * 13 2 1 16 16 C 1.47418 * 125.64691 * 0.02562 * 15 13 2 17 17 C 1.54917 * 104.83090 * 155.83871 * 16 15 13 18 18 C 1.55160 * 101.58029 * 37.00964 * 17 16 15 19 19 O 1.42896 * 110.72206 * 82.86140 * 18 17 16 20 20 C 1.50700 * 110.71992 * 205.96001 * 18 17 16 21 21 H 1.07993 * 120.00401 * 116.15419 * 20 18 17 22 22 C 1.37884 * 119.99821 * 296.15697 * 20 18 17 23 23 N 1.31519 * 119.99706 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00086 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46955 * 89.99854 * 24 22 20 26 26 H 1.48494 * 109.46917 * 210.00043 * 24 22 20 27 27 H 1.48496 * 109.46806 * 329.99762 * 24 22 20 28 28 C 1.47025 * 125.64660 * 179.97438 * 15 13 2 29 29 H 1.09003 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47354 * 300.00343 * 1 2 3 31 31 H 1.08999 * 109.47303 * 60.00255 * 1 2 3 32 32 H 1.08000 * 119.93803 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.05629 * 180.27662 * 7 6 5 34 34 H 1.08000 * 119.99753 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.06014 * 179.97438 * 11 8 7 36 36 H 1.08002 * 119.93768 * 179.97438 * 12 11 8 37 37 H 1.08998 * 110.37046 * 37.00108 * 16 15 13 38 38 H 1.08998 * 110.36836 * 274.67580 * 16 15 13 39 39 H 1.09002 * 111.00552 * 278.93728 * 17 16 15 40 40 H 1.08998 * 111.03704 * 155.09484 * 17 16 15 41 41 H 0.96698 * 114.00339 * 61.45055 * 19 18 17 42 42 H 0.97003 * 119.99339 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.87792 * 61.67927 * 28 15 13 44 44 H 1.08995 * 109.88362 * 300.51338 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1046 0.0594 2.3042 6 6 1.6494 1.3735 2.3233 7 6 1.7412 2.1168 3.4718 8 6 2.3046 1.5542 4.6237 9 6 2.4109 2.3476 5.8550 10 8 2.8997 1.8584 6.8515 11 6 2.7666 0.2324 4.5976 12 6 2.6657 -0.5038 3.4453 13 6 2.0323 -0.7105 -1.2304 14 8 2.6530 -1.7468 -1.1214 15 7 1.7919 -0.1943 -2.4520 16 6 1.0547 1.0521 -2.7281 17 6 1.5705 1.5196 -4.1121 18 6 1.7476 0.1671 -4.8515 19 8 0.5039 -0.2778 -5.3967 20 6 2.7906 0.2833 -5.9331 21 1 3.7012 -0.2937 -5.8694 22 6 2.5822 1.1265 -7.0039 23 7 1.4730 1.8289 -7.0817 24 14 3.8746 1.2702 -8.3450 25 1 3.6039 0.2641 -9.4031 26 1 3.8277 2.6326 -8.9337 27 1 5.2196 1.0280 -7.7641 28 6 2.2224 -0.7804 -3.7297 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2184 1.8075 1.4332 33 1 1.3833 3.1357 3.4868 34 1 2.0539 3.3667 5.8732 35 1 3.2022 -0.2060 5.4833 36 1 3.0221 -1.5231 3.4240 37 1 1.2770 1.8008 -1.9677 38 1 -0.0171 0.8580 -2.7685 39 1 2.5229 2.0412 -4.0183 40 1 0.8324 2.1453 -4.6137 41 1 0.1239 0.3237 -6.0515 42 1 1.3263 2.4218 -7.8352 43 1 1.7688 -1.7633 -3.8581 44 1 3.3088 -0.8655 -3.7512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = -141.086181 kcal Electronic energy + Delta-G solvation = -28271.532107 eV Core-core repulsion = 24153.979144 eV Total energy + Delta-G solvation = -4117.552963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92734 -40.91994 -40.00758 -38.99608 -37.97346 -36.22556 -34.17945 -33.58368 -32.11094 -31.42147 -31.07019 -29.96804 -27.26624 -26.18704 -24.98753 -24.05449 -23.46028 -22.01801 -21.49003 -20.42289 -19.57827 -19.12614 -18.24550 -17.72499 -17.37072 -17.03851 -16.94056 -16.55581 -16.34579 -16.03131 -15.90618 -15.34329 -15.23719 -15.01271 -14.81954 -14.53820 -14.47756 -14.14885 -13.89686 -13.64822 -13.46593 -13.44328 -13.34712 -13.23221 -12.99424 -12.84648 -12.59470 -12.45408 -12.26841 -12.12267 -11.98185 -11.82400 -11.29598 -10.93117 -10.74348 -10.61948 -10.14657 -10.14048 -9.73252 -9.33144 -8.25869 -6.38676 -0.30223 0.34687 1.34877 1.39155 1.41095 1.45509 1.52771 1.54330 2.34533 2.42422 2.80776 2.99868 3.23359 3.44270 3.58009 3.75374 3.78845 3.83360 3.86840 3.96040 4.16047 4.23363 4.34740 4.38155 4.46395 4.52408 4.58589 4.61029 4.63037 4.69540 4.87656 4.98902 5.07814 5.13633 5.16353 5.18559 5.23866 5.36602 5.45649 5.54647 5.63625 5.76705 6.07183 6.21522 6.45934 6.57064 6.63788 6.96145 7.31580 7.43330 8.80388 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002283 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.709539 B =12260.151069 C =12487.910330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 H 0.131 0.869 4 O -0.310 6.310 5 C 0.149 3.851 6 C -0.229 4.229 7 C -0.006 4.006 8 C -0.249 4.249 9 C 0.396 3.604 10 O -0.516 6.516 11 C -0.029 4.029 12 C -0.185 4.185 13 C 0.519 3.481 14 O -0.582 6.582 15 N -0.602 5.602 16 C 0.097 3.903 17 C -0.128 4.128 18 C 0.236 3.764 19 O -0.593 6.593 20 C -0.563 4.563 21 H 0.048 0.952 22 C 0.041 3.959 23 N -0.903 5.903 24 Si 0.955 3.045 25 H -0.280 1.280 26 H -0.275 1.275 27 H -0.277 1.277 28 C 0.129 3.871 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.043 0.957 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 8.689 18.385 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 H 0.148 0.852 4 O -0.222 6.222 5 C 0.103 3.897 6 C -0.247 4.247 7 C -0.024 4.024 8 C -0.250 4.250 9 C 0.259 3.741 10 O -0.393 6.393 11 C -0.048 4.048 12 C -0.203 4.203 13 C 0.308 3.692 14 O -0.462 6.462 15 N -0.335 5.335 16 C -0.024 4.024 17 C -0.167 4.167 18 C 0.196 3.804 19 O -0.402 6.402 20 C -0.601 4.601 21 H 0.067 0.933 22 C -0.161 4.161 23 N -0.542 5.542 24 Si 0.781 3.219 25 H -0.206 1.206 26 H -0.200 1.200 27 H -0.202 1.202 28 C 0.006 3.994 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.233 0.767 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.564 7.285 19.295 21.123 hybrid contribution 0.816 -0.166 -1.815 1.996 sum -3.748 7.118 17.480 19.243 Atomic orbital electron populations 1.22428 0.90025 1.04377 1.06247 1.22265 0.97445 0.97042 0.81215 0.85204 1.86145 1.80599 1.38845 1.16642 1.19743 0.92904 0.91350 0.85715 1.21517 1.07882 0.93148 1.02184 1.21504 0.90904 1.00771 0.89218 1.21167 1.08795 0.96365 0.98680 1.24604 0.72224 0.93644 0.83671 1.90535 1.36341 1.75192 1.37251 1.21193 0.93484 0.93519 0.96572 1.20406 1.05944 1.02197 0.91797 1.20469 0.79678 0.85007 0.84055 1.90692 1.42979 1.25861 1.86639 1.48531 1.54513 1.26029 1.04460 1.22784 0.96499 0.84542 0.98585 1.23125 1.01149 0.98679 0.93737 1.19563 0.82676 0.89110 0.89021 1.86109 1.39036 1.53344 1.61721 1.21713 1.04319 1.26105 1.07993 0.93331 1.25510 0.97445 0.93960 0.99190 1.69674 1.25605 1.27131 1.31773 0.85603 0.79490 0.77561 0.79219 1.20616 1.20024 1.20156 1.21831 0.98279 0.96872 0.82425 0.92300 0.87651 0.88153 0.82110 0.79965 0.82728 0.84751 0.85411 0.87312 0.89696 0.92132 0.89772 0.76747 0.91783 0.93812 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.03 71.98 0.65 -2.46 16 2 C 0.08 1.91 1.99 29.85 0.06 1.97 16 3 H 0.13 2.26 5.77 -2.39 -0.01 2.25 16 4 O -0.31 -8.68 9.33 -70.84 -0.66 -9.34 16 5 C 0.15 3.26 6.61 22.67 0.15 3.41 16 6 C -0.23 -3.21 8.18 22.21 0.18 -3.03 16 7 C -0.01 -0.06 9.77 22.44 0.22 0.16 16 8 C -0.25 -3.53 5.87 -20.15 -0.12 -3.65 16 9 C 0.40 4.78 11.44 70.08 0.80 5.59 16 10 O -0.52 -11.29 17.16 -3.08 -0.05 -11.34 16 11 C -0.03 -0.56 9.57 22.44 0.21 -0.35 16 12 C -0.18 -4.06 9.95 22.21 0.22 -3.84 16 13 C 0.52 18.42 7.24 87.66 0.63 19.06 16 14 O -0.58 -26.41 16.83 15.93 0.27 -26.14 16 15 N -0.60 -21.46 3.33 -811.79 -2.70 -24.16 16 16 C 0.10 2.76 5.33 86.86 0.46 3.23 16 17 C -0.13 -4.86 5.57 31.99 0.18 -4.68 16 18 C 0.24 10.81 0.85 -10.35 -0.01 10.81 16 19 O -0.59 -28.33 13.06 -148.98 -1.95 -30.28 16 20 C -0.56 -28.73 8.22 25.60 0.21 -28.52 16 21 H 0.05 2.56 7.56 -2.91 -0.02 2.54 16 22 C 0.04 2.00 5.29 84.66 0.45 2.45 16 23 N -0.90 -43.59 10.69 21.45 0.23 -43.36 16 24 Si 0.96 40.11 29.54 68.60 2.03 42.13 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 28 C 0.13 5.67 6.22 86.73 0.54 6.20 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.25 6.89 -2.38 -0.02 1.24 16 31 H 0.10 1.56 5.56 -2.39 -0.01 1.55 16 32 H 0.16 1.45 5.40 -2.91 -0.02 1.44 16 33 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 34 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.13 2.54 7.64 -2.91 -0.02 2.52 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.11 2.10 7.32 -2.39 -0.02 2.08 16 38 H 0.08 2.20 7.17 -2.39 -0.02 2.19 16 39 H 0.06 2.37 8.04 -2.39 -0.02 2.35 16 40 H 0.08 3.28 7.64 -2.39 -0.02 3.26 16 41 H 0.38 18.22 7.28 -74.06 -0.54 17.68 16 42 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 43 H 0.04 2.05 8.07 -2.39 -0.02 2.04 16 44 H 0.06 2.70 7.66 -2.39 -0.02 2.68 16 Total: -1.00 -71.18 364.97 2.52 -68.66 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.51 Total: 27.47 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.84 Total: 6.35 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -2.47 Total: -67.52 kcal Atomic # 8 Polarization: -74.70 SS G_CDS: -2.39 Total: -77.09 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -71.18 2.52 -68.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.422 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds