Wall clock time and date at job start Tue Mar 31 2020 17:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.89534 * 2 1 4 4 O 1.43235 * 109.83392 * 239.06557 * 2 1 3 5 5 C 1.43647 * 109.97173 * 242.19934 * 4 2 1 6 6 C 1.54939 * 105.13895 * 335.56995 * 5 4 2 7 7 C 1.54379 * 109.82954 * 120.93108 * 2 1 3 8 8 H 1.08998 * 111.02402 * 22.60377 * 7 2 1 9 9 C 1.53007 * 110.85056 * 259.05886 * 7 2 1 10 10 O 1.45199 * 109.47267 * 180.71243 * 9 7 2 11 11 C 1.34752 * 117.00062 * 180.02562 * 10 9 7 12 12 O 1.21509 * 119.99994 * 359.97438 * 11 10 9 13 13 C 1.47457 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.39830 * 120.06905 * 359.72482 * 13 11 10 15 15 C 1.37608 * 119.93482 * 179.71843 * 14 13 11 16 16 C 1.39275 * 120.06361 * 0.55610 * 15 14 13 17 17 N 1.39077 * 119.92994 * 179.74352 * 16 15 14 18 18 C 1.34779 * 120.00141 * 324.79773 * 17 16 15 19 19 O 1.21722 * 119.99848 * 4.56533 * 18 17 16 20 20 C 1.46192 * 120.00043 * 184.56685 * 18 17 16 21 21 H 1.07997 * 120.00489 * 5.02998 * 20 18 17 22 22 C 1.40127 * 119.99900 * 185.03418 * 20 18 17 23 23 N 1.30638 * 120.00064 * 354.96424 * 22 20 18 24 24 Si 1.86800 * 119.99977 * 174.96223 * 22 20 18 25 25 H 1.48493 * 109.47164 * 95.00093 * 24 22 20 26 26 H 1.48500 * 109.46948 * 215.00097 * 24 22 20 27 27 H 1.48502 * 109.47024 * 335.00091 * 24 22 20 28 28 C 1.39273 * 120.13605 * 359.71927 * 16 15 14 29 29 C 1.37604 * 120.06566 * 359.97438 * 28 16 15 30 30 H 1.09000 * 109.47229 * 299.06821 * 1 2 3 31 31 H 1.09003 * 109.47333 * 59.07002 * 1 2 3 32 32 H 1.09003 * 109.47469 * 179.06883 * 1 2 3 33 33 H 1.08999 * 110.30957 * 216.65316 * 5 4 2 34 34 H 1.09005 * 110.30561 * 94.48612 * 5 4 2 35 35 H 1.09002 * 111.12845 * 278.52864 * 6 5 4 36 36 H 1.08998 * 111.16497 * 154.37493 * 6 5 4 37 37 H 1.09000 * 109.46809 * 60.71686 * 9 7 2 38 38 H 1.08995 * 109.47294 * 300.71791 * 9 7 2 39 39 H 1.08001 * 120.03520 * 359.97380 * 14 13 11 40 40 H 1.08000 * 119.97064 * 180.27471 * 15 14 13 41 41 H 0.96998 * 120.00007 * 144.80016 * 17 16 15 42 42 H 0.97001 * 120.00253 * 179.97438 * 23 22 20 43 43 H 1.07994 * 119.96151 * 180.02562 * 28 16 15 44 44 H 1.07999 * 120.03008 * 180.02562 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0159 -0.6926 -1.1557 5 6 2.7747 -1.8444 -0.7544 6 6 3.2730 -1.5222 0.6768 7 6 2.0536 -0.7465 1.2457 8 1 1.3027 -1.4348 1.6336 9 6 2.4937 0.2417 2.3278 10 8 2.9955 -0.4905 3.4768 11 6 3.4260 0.2376 4.5258 12 8 3.3836 1.4511 4.4814 13 6 3.9496 -0.4383 5.7272 14 6 3.9947 -1.8348 5.7818 15 6 4.4892 -2.4627 6.9020 16 6 4.9338 -1.7087 7.9854 17 7 5.4281 -2.3463 9.1182 18 6 4.8923 -3.5154 9.5214 19 8 4.0331 -4.0551 8.8490 20 6 5.3431 -4.1354 10.7663 21 1 6.0452 -3.6185 11.4037 22 6 4.8643 -5.4004 11.1325 23 7 3.9420 -5.9829 10.4137 24 14 5.5447 -6.2537 12.6485 25 1 4.6636 -5.9749 13.8108 26 1 5.5999 -7.7182 12.4092 27 1 6.9115 -5.7463 12.9306 28 6 4.8848 -0.3177 7.9364 29 6 4.3972 0.3159 6.8164 30 1 -0.3634 0.4993 0.8982 31 1 -0.3634 0.5282 -0.8815 32 1 -0.3634 -1.0275 -0.0167 33 1 3.6210 -1.9925 -1.4253 34 1 2.1400 -2.7306 -0.7436 35 1 4.1620 -0.8920 0.6508 36 1 3.4576 -2.4345 1.2440 37 1 1.6429 0.8526 2.6296 38 1 3.2811 0.8845 1.9343 39 1 3.6456 -2.4201 4.9439 40 1 4.5285 -3.5412 6.9430 41 1 6.1585 -1.9495 9.6183 42 1 3.6108 -6.8588 10.6669 43 1 5.2306 0.2641 8.7779 44 1 4.3598 1.3946 6.7789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869318233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:16 Heat of formation + Delta-G solvation = -152.582848 kcal Electronic energy + Delta-G solvation = -27359.655907 eV Core-core repulsion = 23241.604412 eV Total energy + Delta-G solvation = -4118.051495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58769 -39.85787 -39.12353 -37.10045 -36.31314 -33.73381 -33.39119 -32.62142 -31.77852 -30.59953 -29.72835 -28.12735 -26.56041 -24.88798 -23.42316 -22.34556 -22.02369 -21.02031 -20.89833 -19.83700 -17.90620 -17.65212 -17.40063 -16.64337 -16.45535 -16.19158 -15.91510 -15.61378 -14.78542 -14.58429 -14.38142 -14.12040 -14.09154 -13.87050 -13.46164 -13.20446 -13.12089 -12.86459 -12.71633 -12.46880 -12.31184 -12.11674 -11.95986 -11.88901 -11.41891 -11.40104 -11.25774 -11.18000 -11.13533 -10.84548 -10.73926 -10.61065 -10.43715 -10.33769 -9.87873 -9.50771 -9.03342 -8.66058 -7.89577 -7.38467 -6.48361 -4.95707 1.08980 1.82502 2.61125 2.80552 2.99794 3.07578 3.11150 3.45640 3.88222 4.08953 4.11438 4.26454 4.34193 4.43951 4.46029 4.73528 4.83363 4.84835 4.98174 5.01666 5.06574 5.19899 5.25811 5.27860 5.32583 5.46129 5.46475 5.48070 5.62192 5.65812 5.72566 5.79233 5.87179 5.89982 6.04130 6.30429 6.42033 6.65003 6.67229 6.74867 6.87805 7.12740 7.18955 7.54281 7.84416 7.89745 7.99603 8.71935 9.00786 10.20736 10.41768 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.002073 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.439524 B =13500.611888 C =14445.984633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 H 0.083 0.917 4 O -0.378 6.378 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.121 4.121 8 H 0.100 0.900 9 C 0.080 3.920 10 O -0.351 6.351 11 C 0.519 3.481 12 O -0.524 6.524 13 C -0.187 4.187 14 C -0.039 4.039 15 C -0.149 4.149 16 C 0.233 3.767 17 N -0.694 5.694 18 C 0.539 3.461 19 O -0.556 6.556 20 C -0.536 4.536 21 H 0.074 0.926 22 C 0.086 3.914 23 N -0.756 5.756 24 Si 0.914 3.086 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.262 1.262 28 C -0.192 4.192 29 C -0.028 4.028 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.397 0.603 42 H 0.274 0.726 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 9.009 -15.505 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.101 0.899 4 O -0.298 6.298 5 C -0.027 4.027 6 C -0.187 4.187 7 C -0.139 4.139 8 H 0.118 0.882 9 C 0.006 3.994 10 O -0.268 6.268 11 C 0.367 3.633 12 O -0.415 6.415 13 C -0.190 4.190 14 C -0.058 4.058 15 C -0.170 4.170 16 C 0.132 3.868 17 N -0.336 5.336 18 C 0.346 3.654 19 O -0.437 6.437 20 C -0.571 4.571 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.384 5.384 24 Si 0.738 3.262 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.186 1.186 28 C -0.214 4.214 29 C -0.048 4.048 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.231 0.769 42 H 0.085 0.915 43 H 0.146 0.854 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.869 8.770 -16.158 18.480 hybrid contribution 0.603 -0.128 1.260 1.403 sum -1.266 8.642 -14.898 17.270 Atomic orbital electron populations 1.22163 0.94398 1.02931 1.02606 1.22608 0.94541 0.96261 0.83821 0.89931 1.88442 1.71021 1.40609 1.29704 1.23408 0.95103 0.88861 0.95331 1.23326 0.97791 1.01821 0.95747 1.22841 0.98943 0.97851 0.94302 0.88170 1.22867 0.99298 0.93513 0.83753 1.86556 1.73973 1.41096 1.25193 1.21263 0.73987 0.85495 0.82584 1.90790 1.53767 1.15051 1.81850 1.18785 1.12733 0.93912 0.93578 1.21260 0.94320 0.92534 0.97672 1.21521 1.02173 1.02284 0.90988 1.18324 0.90665 0.90955 0.86896 1.44271 1.37623 1.25782 1.25926 1.18472 0.81868 0.77869 0.87156 1.90627 1.33768 1.61794 1.57556 1.20860 1.28190 1.02952 1.05112 0.90768 1.25764 0.93422 0.96940 0.97485 1.69976 1.20020 1.13498 1.34865 0.86234 0.80066 0.78707 0.81165 1.19583 1.20137 1.18633 1.20855 1.07887 0.93075 0.99551 1.20823 0.93501 0.99561 0.90869 0.91263 0.91667 0.91908 0.89531 0.91963 0.90129 0.88972 0.90881 0.90944 0.85193 0.83081 0.76866 0.91543 0.85445 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.44 37.15 0.35 -0.86 16 2 C 0.09 0.73 3.77 -26.01 -0.10 0.63 16 3 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 4 O -0.38 -3.80 11.02 -35.23 -0.39 -4.19 16 5 C 0.05 0.40 7.78 38.18 0.30 0.69 16 6 C -0.15 -1.24 6.48 -24.48 -0.16 -1.40 16 7 C -0.12 -1.06 2.81 -88.67 -0.25 -1.31 16 8 H 0.10 0.87 7.86 -51.93 -0.41 0.46 16 9 C 0.08 0.84 4.76 37.16 0.18 1.02 16 10 O -0.35 -4.70 9.32 -40.63 -0.38 -5.08 16 11 C 0.52 8.10 7.89 34.49 0.27 8.37 16 12 O -0.52 -8.95 16.13 -19.27 -0.31 -9.26 16 13 C -0.19 -3.05 5.88 -104.95 -0.62 -3.67 16 14 C -0.04 -0.65 9.60 -39.22 -0.38 -1.03 16 15 C -0.15 -2.94 8.66 -39.43 -0.34 -3.28 16 16 C 0.23 4.51 6.29 -83.80 -0.53 3.99 16 17 N -0.69 -14.40 5.29 -11.18 -0.06 -14.46 16 18 C 0.54 14.03 7.57 -13.07 -0.10 13.93 16 19 O -0.56 -16.31 12.44 5.17 0.06 -16.25 16 20 C -0.54 -13.84 9.53 -35.68 -0.34 -14.18 16 21 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 22 C 0.09 2.21 5.50 -17.35 -0.10 2.11 16 23 N -0.76 -20.98 11.84 55.55 0.66 -20.33 16 24 Si 0.91 18.63 29.56 -169.99 -5.03 13.60 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 28 C -0.19 -3.11 9.95 -39.43 -0.39 -3.50 16 29 C -0.03 -0.45 9.58 -39.21 -0.38 -0.82 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.32 16 39 H 0.13 1.93 7.60 -52.49 -0.40 1.53 16 40 H 0.15 3.40 6.21 -52.49 -0.33 3.07 16 41 H 0.40 6.90 8.79 -40.82 -0.36 6.55 16 42 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 43 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.13 1.83 7.64 -52.49 -0.40 1.43 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -32.11 375.64 -8.42 -40.53 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.06 Total: 9.09 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.57 Total: 0.69 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.60 Total: -34.79 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.01 Total: -34.78 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.11 -8.42 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869318233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.054 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds