Wall clock time and date at job start Tue Mar 31 2020 17:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.89534 * 2 1 4 4 O 1.43235 * 109.83392 * 239.06557 * 2 1 3 5 5 C 1.43647 * 109.97173 * 242.19934 * 4 2 1 6 6 C 1.54939 * 105.13895 * 335.56995 * 5 4 2 7 7 C 1.54379 * 109.82954 * 120.93108 * 2 1 3 8 8 H 1.08998 * 111.02402 * 22.60377 * 7 2 1 9 9 C 1.53007 * 110.85056 * 259.05886 * 7 2 1 10 10 O 1.45199 * 109.47267 * 180.71243 * 9 7 2 11 11 C 1.34752 * 117.00062 * 180.02562 * 10 9 7 12 12 O 1.21509 * 119.99994 * 359.97438 * 11 10 9 13 13 C 1.47457 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.39830 * 120.06905 * 359.72482 * 13 11 10 15 15 C 1.37608 * 119.93482 * 179.71843 * 14 13 11 16 16 C 1.39275 * 120.06361 * 0.55610 * 15 14 13 17 17 N 1.39077 * 119.92994 * 179.74352 * 16 15 14 18 18 C 1.34779 * 120.00141 * 324.79773 * 17 16 15 19 19 O 1.21722 * 119.99848 * 4.56533 * 18 17 16 20 20 C 1.46192 * 120.00043 * 184.56685 * 18 17 16 21 21 H 1.07997 * 120.00489 * 5.02998 * 20 18 17 22 22 C 1.40127 * 119.99900 * 185.03418 * 20 18 17 23 23 N 1.30638 * 120.00064 * 354.96424 * 22 20 18 24 24 Si 1.86800 * 119.99977 * 174.96223 * 22 20 18 25 25 H 1.48493 * 109.47164 * 95.00093 * 24 22 20 26 26 H 1.48500 * 109.46948 * 215.00097 * 24 22 20 27 27 H 1.48502 * 109.47024 * 335.00091 * 24 22 20 28 28 C 1.39273 * 120.13605 * 359.71927 * 16 15 14 29 29 C 1.37604 * 120.06566 * 359.97438 * 28 16 15 30 30 H 1.09000 * 109.47229 * 299.06821 * 1 2 3 31 31 H 1.09003 * 109.47333 * 59.07002 * 1 2 3 32 32 H 1.09003 * 109.47469 * 179.06883 * 1 2 3 33 33 H 1.08999 * 110.30957 * 216.65316 * 5 4 2 34 34 H 1.09005 * 110.30561 * 94.48612 * 5 4 2 35 35 H 1.09002 * 111.12845 * 278.52864 * 6 5 4 36 36 H 1.08998 * 111.16497 * 154.37493 * 6 5 4 37 37 H 1.09000 * 109.46809 * 60.71686 * 9 7 2 38 38 H 1.08995 * 109.47294 * 300.71791 * 9 7 2 39 39 H 1.08001 * 120.03520 * 359.97380 * 14 13 11 40 40 H 1.08000 * 119.97064 * 180.27471 * 15 14 13 41 41 H 0.96998 * 120.00007 * 144.80016 * 17 16 15 42 42 H 0.97001 * 120.00253 * 179.97438 * 23 22 20 43 43 H 1.07994 * 119.96151 * 180.02562 * 28 16 15 44 44 H 1.07999 * 120.03008 * 180.02562 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0159 -0.6926 -1.1557 5 6 2.7747 -1.8444 -0.7544 6 6 3.2730 -1.5222 0.6768 7 6 2.0536 -0.7465 1.2457 8 1 1.3027 -1.4348 1.6336 9 6 2.4937 0.2417 2.3278 10 8 2.9955 -0.4905 3.4768 11 6 3.4260 0.2376 4.5258 12 8 3.3836 1.4511 4.4814 13 6 3.9496 -0.4383 5.7272 14 6 3.9947 -1.8348 5.7818 15 6 4.4892 -2.4627 6.9020 16 6 4.9338 -1.7087 7.9854 17 7 5.4281 -2.3463 9.1182 18 6 4.8923 -3.5154 9.5214 19 8 4.0331 -4.0551 8.8490 20 6 5.3431 -4.1354 10.7663 21 1 6.0452 -3.6185 11.4037 22 6 4.8643 -5.4004 11.1325 23 7 3.9420 -5.9829 10.4137 24 14 5.5447 -6.2537 12.6485 25 1 4.6636 -5.9749 13.8108 26 1 5.5999 -7.7182 12.4092 27 1 6.9115 -5.7463 12.9306 28 6 4.8848 -0.3177 7.9364 29 6 4.3972 0.3159 6.8164 30 1 -0.3634 0.4993 0.8982 31 1 -0.3634 0.5282 -0.8815 32 1 -0.3634 -1.0275 -0.0167 33 1 3.6210 -1.9925 -1.4253 34 1 2.1400 -2.7306 -0.7436 35 1 4.1620 -0.8920 0.6508 36 1 3.4576 -2.4345 1.2440 37 1 1.6429 0.8526 2.6296 38 1 3.2811 0.8845 1.9343 39 1 3.6456 -2.4201 4.9439 40 1 4.5285 -3.5412 6.9430 41 1 6.1585 -1.9495 9.6183 42 1 3.6108 -6.8588 10.6669 43 1 5.2306 0.2641 8.7779 44 1 4.3598 1.3946 6.7789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869318233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:15 Heat of formation + Delta-G solvation = -171.981766 kcal Electronic energy + Delta-G solvation = -27360.497107 eV Core-core repulsion = 23241.604412 eV Total energy + Delta-G solvation = -4118.892696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72691 -40.87323 -40.45405 -38.71633 -37.53094 -35.42498 -34.58582 -34.20302 -32.41189 -31.97618 -31.20543 -29.03653 -28.33006 -25.81086 -24.67254 -23.74371 -22.88348 -22.28189 -21.71156 -21.37711 -19.56934 -18.95599 -18.42447 -17.94587 -17.66059 -17.50758 -17.18600 -16.75463 -16.13924 -15.74985 -15.51102 -15.39258 -15.15966 -14.88323 -14.75551 -14.62882 -14.40007 -14.17866 -13.89606 -13.57217 -13.48151 -13.23902 -13.12384 -12.93394 -12.79917 -12.72957 -12.72508 -12.21703 -12.11328 -12.04232 -12.03220 -11.82899 -11.58280 -11.49384 -11.14019 -10.90611 -10.54845 -10.10651 -9.80878 -8.97709 -8.39775 -6.96657 -0.27874 0.45593 1.38510 1.41297 1.50296 1.53572 1.58266 2.19936 2.35213 2.77326 2.80152 2.89254 3.33552 3.50315 3.51979 3.71393 3.86903 3.95268 4.00760 4.05070 4.14108 4.21093 4.30890 4.34520 4.36954 4.45262 4.50618 4.66768 4.69920 4.77528 4.84575 4.97476 5.00910 5.03448 5.13004 5.18903 5.24835 5.27599 5.33454 5.35860 5.42647 5.67804 5.77445 6.01157 6.12503 6.25266 6.68150 6.76285 7.25415 8.29184 8.53369 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.002073 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.439524 B =13500.611888 C =14445.984633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 H 0.087 0.913 4 O -0.397 6.397 5 C 0.048 3.952 6 C -0.150 4.150 7 C -0.116 4.116 8 H 0.101 0.899 9 C 0.077 3.923 10 O -0.351 6.351 11 C 0.525 3.475 12 O -0.537 6.537 13 C -0.184 4.184 14 C -0.032 4.032 15 C -0.170 4.170 16 C 0.205 3.795 17 N -0.688 5.688 18 C 0.527 3.473 19 O -0.601 6.601 20 C -0.562 4.562 21 H 0.096 0.904 22 C 0.030 3.970 23 N -0.810 5.810 24 Si 0.999 3.001 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.246 1.246 28 C -0.174 4.174 29 C -0.024 4.024 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.413 0.587 42 H 0.279 0.721 43 H 0.159 0.841 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 10.448 -15.225 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.105 0.895 4 O -0.317 6.317 5 C -0.028 4.028 6 C -0.187 4.187 7 C -0.134 4.134 8 H 0.120 0.880 9 C 0.003 3.997 10 O -0.268 6.268 11 C 0.372 3.628 12 O -0.429 6.429 13 C -0.187 4.187 14 C -0.051 4.051 15 C -0.191 4.191 16 C 0.105 3.895 17 N -0.331 5.331 18 C 0.335 3.665 19 O -0.486 6.486 20 C -0.597 4.597 21 H 0.114 0.886 22 C -0.186 4.186 23 N -0.439 5.439 24 Si 0.819 3.181 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.169 1.169 28 C -0.195 4.195 29 C -0.043 4.043 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.163 0.837 40 H 0.132 0.868 41 H 0.249 0.751 42 H 0.089 0.911 43 H 0.176 0.824 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.229 10.262 -15.909 18.971 hybrid contribution 0.372 -0.454 0.983 1.145 sum -0.857 9.808 -14.926 17.880 Atomic orbital electron populations 1.22160 0.93587 1.03008 1.03189 1.22674 0.95193 0.96272 0.83152 0.89473 1.88422 1.71401 1.41309 1.30570 1.23508 0.95477 0.88547 0.95279 1.23330 0.97571 1.01781 0.96025 1.22808 0.99162 0.97584 0.93883 0.88032 1.23109 0.99592 0.93970 0.83027 1.86543 1.73532 1.41275 1.25442 1.21044 0.73757 0.85169 0.82781 1.90787 1.54371 1.15503 1.82200 1.18998 1.11792 0.93586 0.94317 1.21299 0.93547 0.93138 0.97089 1.21303 1.04241 1.00753 0.92801 1.18548 0.92253 0.92344 0.86391 1.43762 1.38031 1.24654 1.26632 1.18773 0.81525 0.78955 0.87273 1.90594 1.35738 1.63552 1.58741 1.21409 1.28843 1.03833 1.05622 0.88631 1.26986 0.93178 0.97518 1.00961 1.70129 1.21992 1.14282 1.37476 0.84965 0.79836 0.77136 0.76205 1.18798 1.19811 1.16949 1.21077 1.06361 0.91519 1.00567 1.21122 0.92339 1.00686 0.90165 0.90348 0.91443 0.92080 0.88414 0.91336 0.90224 0.88904 0.90268 0.90516 0.83700 0.86760 0.75075 0.91138 0.82389 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.44 71.98 0.68 -1.48 16 2 C 0.08 1.32 3.77 31.06 0.12 1.44 16 3 H 0.09 1.26 7.81 -2.39 -0.02 1.25 16 4 O -0.40 -7.50 11.02 -148.98 -1.64 -9.14 16 5 C 0.05 0.71 7.78 72.65 0.56 1.27 16 6 C -0.15 -2.31 6.48 32.05 0.21 -2.10 16 7 C -0.12 -1.87 2.81 -9.53 -0.03 -1.89 16 8 H 0.10 1.63 7.86 -2.39 -0.02 1.61 16 9 C 0.08 1.48 4.76 71.98 0.34 1.83 16 10 O -0.35 -8.85 9.32 -56.62 -0.53 -9.38 16 11 C 0.52 15.38 7.89 70.25 0.55 15.93 16 12 O -0.54 -17.11 16.13 19.81 0.32 -16.79 16 13 C -0.18 -5.72 5.88 -20.08 -0.12 -5.84 16 14 C -0.03 -1.07 9.60 22.51 0.22 -0.85 16 15 C -0.17 -6.95 8.66 22.37 0.19 -6.75 16 16 C 0.20 7.94 6.29 38.49 0.24 8.19 16 17 N -0.69 -28.89 5.29 -307.50 -1.63 -30.52 16 18 C 0.53 28.37 7.57 86.31 0.65 29.02 16 19 O -0.60 -37.14 12.44 -4.42 -0.05 -37.20 16 20 C -0.56 -29.37 9.53 24.80 0.24 -29.13 16 21 H 0.10 4.39 7.85 -2.91 -0.02 4.37 16 22 C 0.03 1.58 5.50 85.33 0.47 2.05 16 23 N -0.81 -46.53 11.84 21.85 0.26 -46.28 16 24 Si 1.00 38.04 29.56 68.60 2.03 40.07 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 27 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 28 C -0.17 -5.30 9.95 22.37 0.22 -5.08 16 29 C -0.02 -0.70 9.58 22.51 0.22 -0.49 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 1.24 8.02 -2.39 -0.02 1.22 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.15 4.30 7.60 -2.91 -0.02 4.28 16 40 H 0.11 5.55 6.21 -2.91 -0.02 5.53 16 41 H 0.41 14.17 8.79 -92.71 -0.82 13.36 16 42 H 0.28 14.47 8.29 -92.71 -0.77 13.70 16 43 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 44 H 0.15 3.78 7.64 -2.91 -0.02 3.76 16 Total: -1.00 -71.45 375.64 3.74 -67.70 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.22 Total: 35.42 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.77 Total: 6.10 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.37 Total: -76.79 kcal Atomic # 8 Polarization: -70.60 SS G_CDS: -1.90 Total: -72.51 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -71.45 3.74 -67.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869318233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.277 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds