Wall clock time and date at job start Tue Mar 31 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.82121 * 2 1 4 4 O 1.43231 * 109.90615 * 120.93314 * 2 1 3 5 5 C 1.43657 * 109.96778 * 117.84897 * 4 2 1 6 6 C 1.55199 * 105.25945 * 24.28384 * 5 4 2 7 7 C 1.54380 * 109.83113 * 239.11910 * 2 1 3 8 8 H 1.09001 * 110.84565 * 337.42861 * 7 2 1 9 9 C 1.52999 * 110.85380 * 100.84363 * 7 2 1 10 10 O 1.45193 * 109.47346 * 182.22984 * 9 7 2 11 11 C 1.34752 * 116.99927 * 180.02562 * 10 9 7 12 12 O 1.21507 * 119.99910 * 359.97438 * 11 10 9 13 13 C 1.47464 * 119.99896 * 180.02562 * 11 10 9 14 14 C 1.39837 * 120.06357 * 179.97438 * 13 11 10 15 15 C 1.37617 * 119.92962 * 179.97438 * 14 13 11 16 16 C 1.39272 * 120.06494 * 0.28051 * 15 14 13 17 17 N 1.39072 * 119.92806 * 179.69580 * 16 15 14 18 18 C 1.34779 * 119.99994 * 33.65053 * 17 16 15 19 19 O 1.21721 * 120.00033 * 5.27861 * 18 17 16 20 20 C 1.46200 * 119.99920 * 185.27241 * 18 17 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 18 17 22 22 C 1.40121 * 119.99822 * 180.02562 * 20 18 17 23 23 N 1.30636 * 120.00199 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99832 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47094 * 59.99989 * 24 22 20 26 26 H 1.48503 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47089 * 299.99742 * 24 22 20 28 28 C 1.39277 * 120.13389 * 359.44475 * 16 15 14 29 29 C 1.37600 * 120.06838 * 0.55288 * 28 16 15 30 30 H 1.08999 * 109.46954 * 180.88679 * 1 2 3 31 31 H 1.09002 * 109.46778 * 300.88359 * 1 2 3 32 32 H 1.08998 * 109.47137 * 60.88332 * 1 2 3 33 33 H 1.09001 * 110.30990 * 143.34433 * 5 4 2 34 34 H 1.09005 * 110.30351 * 265.51124 * 5 4 2 35 35 H 1.09008 * 111.30066 * 205.88600 * 6 5 4 36 36 H 1.09000 * 111.05782 * 81.64575 * 6 5 4 37 37 H 1.09001 * 109.46611 * 62.22378 * 9 7 2 38 38 H 1.09001 * 109.46625 * 302.23037 * 9 7 2 39 39 H 1.07995 * 120.04023 * 0.02562 * 14 13 11 40 40 H 1.08001 * 119.96229 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00159 * 213.64224 * 17 16 15 42 42 H 0.97002 * 120.00024 * 180.02562 * 23 22 20 43 43 H 1.08002 * 119.96046 * 180.25193 * 28 16 15 44 44 H 1.08003 * 120.03153 * 179.70321 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 8 2.0177 -0.6923 1.1552 5 6 2.7778 -1.8430 0.7530 6 6 3.2738 -1.5236 -0.6825 7 6 2.0538 -0.7454 -1.2464 8 1 1.3005 -1.4320 -1.6327 9 6 2.4916 0.2437 -2.3285 10 8 2.9284 -0.4875 -3.5044 11 6 3.3496 0.2415 -4.5566 12 8 3.3514 1.4549 -4.4932 13 6 3.8073 -0.4335 -5.7852 14 6 4.2442 0.3217 -6.8780 15 6 4.6712 -0.3110 -8.0231 16 6 4.6630 -1.7018 -8.0962 17 7 5.0892 -2.3381 -9.2571 18 6 6.0779 -1.7984 -9.9972 19 8 6.6631 -0.8073 -9.6012 20 6 6.4477 -2.4037 -11.2757 21 1 5.9283 -3.2829 -11.6272 22 6 7.4759 -1.8429 -12.0449 23 7 8.1045 -0.7797 -11.6194 24 14 7.9479 -2.6158 -13.6787 25 1 6.7739 -2.6068 -14.5880 26 1 9.0547 -1.8388 -14.2925 27 1 8.3900 -4.0157 -13.4547 28 6 4.2338 -2.4567 -7.0073 29 6 3.8057 -1.8298 -5.8596 30 1 -0.3633 -1.0275 0.0159 31 1 -0.3633 0.5275 0.8820 32 1 -0.3633 0.5000 -0.8978 33 1 3.6248 -1.9901 1.4231 34 1 2.1442 -2.7300 0.7423 35 1 3.4548 -2.4358 -1.2511 36 1 4.1638 -0.8948 -0.6585 37 1 3.3140 0.8525 -1.9529 38 1 1.6531 0.8883 -2.5921 39 1 4.2473 1.4002 -6.8233 40 1 5.0084 0.2717 -8.8676 41 1 4.6751 -3.1704 -9.5340 42 1 8.8161 -0.3913 -12.1521 43 1 4.2325 -3.5351 -7.0656 44 1 3.4685 -2.4157 -5.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869318235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:18 Heat of formation + Delta-G solvation = -153.067498 kcal Electronic energy + Delta-G solvation = -27247.730356 eV Core-core repulsion = 23129.657844 eV Total energy + Delta-G solvation = -4118.072511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59937 -39.87967 -39.12634 -37.09165 -36.33075 -33.73048 -33.43316 -32.60660 -31.82004 -30.61479 -29.73566 -28.14986 -26.56433 -24.90171 -23.41935 -22.49263 -22.00555 -21.04873 -20.82988 -19.90884 -17.97321 -17.51406 -17.45776 -16.66383 -16.47779 -16.20434 -15.92734 -15.61305 -14.83407 -14.54277 -14.43739 -14.22078 -14.04329 -13.95286 -13.44869 -13.19958 -13.14885 -12.80898 -12.74427 -12.52668 -12.37046 -12.05964 -12.02337 -11.90018 -11.46509 -11.40140 -11.30056 -11.18360 -11.16041 -10.84429 -10.71939 -10.62895 -10.46181 -10.34349 -9.92123 -9.53611 -9.02145 -8.66963 -7.93248 -7.35420 -6.46960 -4.95562 1.09601 1.81861 2.58998 2.80838 3.02432 3.07643 3.09511 3.41064 3.88557 4.04611 4.09186 4.22866 4.38154 4.39906 4.43088 4.69154 4.79657 4.80720 4.93536 4.98160 5.03383 5.16786 5.21926 5.26814 5.29547 5.42043 5.42572 5.49063 5.57050 5.60329 5.72967 5.74379 5.83559 5.89629 6.03332 6.31798 6.38687 6.55571 6.62773 6.80314 6.85587 7.12445 7.18318 7.55049 7.83614 7.90332 7.99168 8.72183 9.00989 10.21721 10.42874 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001854 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.270222 B =15099.918626 C =15405.494937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.083 0.917 4 O -0.377 6.377 5 C 0.049 3.951 6 C -0.150 4.150 7 C -0.120 4.120 8 H 0.099 0.901 9 C 0.079 3.921 10 O -0.354 6.354 11 C 0.518 3.482 12 O -0.520 6.520 13 C -0.188 4.188 14 C -0.029 4.029 15 C -0.147 4.147 16 C 0.237 3.763 17 N -0.694 5.694 18 C 0.537 3.463 19 O -0.555 6.555 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.085 3.915 23 N -0.756 5.756 24 Si 0.915 3.085 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.266 1.266 28 C -0.196 4.196 29 C -0.035 4.035 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.397 0.603 42 H 0.275 0.725 43 H 0.126 0.874 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -3.494 17.895 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.101 0.899 4 O -0.297 6.297 5 C -0.027 4.027 6 C -0.187 4.187 7 C -0.138 4.138 8 H 0.117 0.883 9 C 0.005 3.995 10 O -0.271 6.271 11 C 0.365 3.635 12 O -0.410 6.410 13 C -0.191 4.191 14 C -0.048 4.048 15 C -0.168 4.168 16 C 0.135 3.865 17 N -0.335 5.335 18 C 0.345 3.655 19 O -0.436 6.436 20 C -0.571 4.571 21 H 0.092 0.908 22 C -0.137 4.137 23 N -0.383 5.383 24 Si 0.739 3.261 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.191 1.191 28 C -0.217 4.217 29 C -0.054 4.054 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.165 0.835 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.144 0.856 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.827 -2.228 18.270 21.878 hybrid contribution 0.112 -0.801 -1.087 1.355 sum -11.715 -3.028 17.183 21.016 Atomic orbital electron populations 1.22161 0.94389 1.02852 1.02654 1.22616 0.94531 0.96362 0.83806 0.89884 1.88448 1.70875 1.40697 1.29686 1.23448 0.95092 0.88853 0.95312 1.23380 0.97861 1.01751 0.95719 1.22824 0.98864 0.97822 0.94319 0.88267 1.22869 1.00085 0.93537 0.83023 1.86531 1.75757 1.41195 1.23626 1.21273 0.73680 0.85586 0.82968 1.90808 1.52504 1.15059 1.82604 1.18766 1.13653 0.93818 0.92829 1.21055 0.92906 0.99981 0.90837 1.21304 1.02216 0.93581 0.99653 1.18302 0.89106 0.92098 0.87006 1.44324 1.38851 1.27160 1.23208 1.18468 0.77800 0.84556 0.84679 1.90660 1.53768 1.27374 1.71802 1.20837 1.19619 1.14279 1.02370 0.90828 1.25764 0.94765 0.94019 0.99122 1.69961 1.16433 1.16084 1.35849 0.86297 0.78756 0.79769 0.81258 1.19039 1.20304 1.19059 1.20865 1.08444 0.99694 0.92716 1.21006 0.94634 0.92799 0.97003 0.91971 0.91639 0.91249 0.89504 0.92055 0.89051 0.90067 0.90885 0.90880 0.85140 0.83461 0.76888 0.91448 0.85593 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.44 37.16 0.35 -0.74 16 2 C 0.08 0.67 3.77 -26.01 -0.10 0.58 16 3 H 0.08 0.64 7.81 -51.93 -0.41 0.24 16 4 O -0.38 -3.60 11.02 -35.23 -0.39 -3.99 16 5 C 0.05 0.36 7.78 38.32 0.30 0.66 16 6 C -0.15 -1.14 6.56 -24.34 -0.16 -1.30 16 7 C -0.12 -0.96 2.79 -88.67 -0.25 -1.20 16 8 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 9 C 0.08 0.80 4.76 37.16 0.18 0.97 16 10 O -0.35 -4.48 9.37 -40.63 -0.38 -4.86 16 11 C 0.52 8.06 7.89 34.49 0.27 8.33 16 12 O -0.52 -9.21 16.13 -19.27 -0.31 -9.52 16 13 C -0.19 -3.06 5.88 -104.94 -0.62 -3.68 16 14 C -0.03 -0.51 9.58 -39.21 -0.38 -0.89 16 15 C -0.15 -2.97 8.62 -39.42 -0.34 -3.31 16 16 C 0.24 4.59 6.27 -83.81 -0.53 4.06 16 17 N -0.69 -14.41 5.30 -11.18 -0.06 -14.47 16 18 C 0.54 14.09 7.46 -13.06 -0.10 13.99 16 19 O -0.55 -16.52 12.69 5.17 0.07 -16.46 16 20 C -0.54 -13.88 9.54 -35.68 -0.34 -14.22 16 21 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 22 C 0.09 2.21 5.50 -17.35 -0.10 2.11 16 23 N -0.76 -21.16 11.82 55.55 0.66 -20.51 16 24 Si 0.92 18.72 29.56 -169.99 -5.02 13.69 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 28 C -0.20 -3.06 9.94 -39.43 -0.39 -3.45 16 29 C -0.04 -0.51 9.60 -39.22 -0.38 -0.89 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.08 0.65 7.98 -51.93 -0.41 0.24 16 37 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.13 2.24 7.64 -52.49 -0.40 1.84 16 40 H 0.15 3.40 6.41 -52.49 -0.34 3.06 16 41 H 0.40 6.86 8.79 -40.82 -0.36 6.50 16 42 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.13 1.52 7.60 -52.48 -0.40 1.12 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.58 375.92 -8.41 -40.99 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.07 Total: 8.43 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.57 Total: 1.02 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.60 Total: -34.97 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.01 Total: -34.83 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.58 -8.41 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869318235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.079 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds