Wall clock time and date at job start Tue Mar 31 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.82121 * 2 1 4 4 O 1.43231 * 109.90615 * 120.93314 * 2 1 3 5 5 C 1.43657 * 109.96778 * 117.84897 * 4 2 1 6 6 C 1.55199 * 105.25945 * 24.28384 * 5 4 2 7 7 C 1.54380 * 109.83113 * 239.11910 * 2 1 3 8 8 H 1.09001 * 110.84565 * 337.42861 * 7 2 1 9 9 C 1.52999 * 110.85380 * 100.84363 * 7 2 1 10 10 O 1.45193 * 109.47346 * 182.22984 * 9 7 2 11 11 C 1.34752 * 116.99927 * 180.02562 * 10 9 7 12 12 O 1.21507 * 119.99910 * 359.97438 * 11 10 9 13 13 C 1.47464 * 119.99896 * 180.02562 * 11 10 9 14 14 C 1.39837 * 120.06357 * 179.97438 * 13 11 10 15 15 C 1.37617 * 119.92962 * 179.97438 * 14 13 11 16 16 C 1.39272 * 120.06494 * 0.28051 * 15 14 13 17 17 N 1.39072 * 119.92806 * 179.69580 * 16 15 14 18 18 C 1.34779 * 119.99994 * 33.65053 * 17 16 15 19 19 O 1.21721 * 120.00033 * 5.27861 * 18 17 16 20 20 C 1.46200 * 119.99920 * 185.27241 * 18 17 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 18 17 22 22 C 1.40121 * 119.99822 * 180.02562 * 20 18 17 23 23 N 1.30636 * 120.00199 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99832 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47094 * 59.99989 * 24 22 20 26 26 H 1.48503 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47089 * 299.99742 * 24 22 20 28 28 C 1.39277 * 120.13389 * 359.44475 * 16 15 14 29 29 C 1.37600 * 120.06838 * 0.55288 * 28 16 15 30 30 H 1.08999 * 109.46954 * 180.88679 * 1 2 3 31 31 H 1.09002 * 109.46778 * 300.88359 * 1 2 3 32 32 H 1.08998 * 109.47137 * 60.88332 * 1 2 3 33 33 H 1.09001 * 110.30990 * 143.34433 * 5 4 2 34 34 H 1.09005 * 110.30351 * 265.51124 * 5 4 2 35 35 H 1.09008 * 111.30066 * 205.88600 * 6 5 4 36 36 H 1.09000 * 111.05782 * 81.64575 * 6 5 4 37 37 H 1.09001 * 109.46611 * 62.22378 * 9 7 2 38 38 H 1.09001 * 109.46625 * 302.23037 * 9 7 2 39 39 H 1.07995 * 120.04023 * 0.02562 * 14 13 11 40 40 H 1.08001 * 119.96229 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00159 * 213.64224 * 17 16 15 42 42 H 0.97002 * 120.00024 * 180.02562 * 23 22 20 43 43 H 1.08002 * 119.96046 * 180.25193 * 28 16 15 44 44 H 1.08003 * 120.03153 * 179.70321 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 8 2.0177 -0.6923 1.1552 5 6 2.7778 -1.8430 0.7530 6 6 3.2738 -1.5236 -0.6825 7 6 2.0538 -0.7454 -1.2464 8 1 1.3005 -1.4320 -1.6327 9 6 2.4916 0.2437 -2.3285 10 8 2.9284 -0.4875 -3.5044 11 6 3.3496 0.2415 -4.5566 12 8 3.3514 1.4549 -4.4932 13 6 3.8073 -0.4335 -5.7852 14 6 4.2442 0.3217 -6.8780 15 6 4.6712 -0.3110 -8.0231 16 6 4.6630 -1.7018 -8.0962 17 7 5.0892 -2.3381 -9.2571 18 6 6.0779 -1.7984 -9.9972 19 8 6.6631 -0.8073 -9.6012 20 6 6.4477 -2.4037 -11.2757 21 1 5.9283 -3.2829 -11.6272 22 6 7.4759 -1.8429 -12.0449 23 7 8.1045 -0.7797 -11.6194 24 14 7.9479 -2.6158 -13.6787 25 1 6.7739 -2.6068 -14.5880 26 1 9.0547 -1.8388 -14.2925 27 1 8.3900 -4.0157 -13.4547 28 6 4.2338 -2.4567 -7.0073 29 6 3.8057 -1.8298 -5.8596 30 1 -0.3633 -1.0275 0.0159 31 1 -0.3633 0.5275 0.8820 32 1 -0.3633 0.5000 -0.8978 33 1 3.6248 -1.9901 1.4231 34 1 2.1442 -2.7300 0.7423 35 1 3.4548 -2.4358 -1.2511 36 1 4.1638 -0.8948 -0.6585 37 1 3.3140 0.8525 -1.9529 38 1 1.6531 0.8883 -2.5921 39 1 4.2473 1.4002 -6.8233 40 1 5.0084 0.2717 -8.8676 41 1 4.6751 -3.1704 -9.5340 42 1 8.8161 -0.3913 -12.1521 43 1 4.2325 -3.5351 -7.0656 44 1 3.4685 -2.4157 -5.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869318235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:18 Heat of formation + Delta-G solvation = -173.380508 kcal Electronic energy + Delta-G solvation = -27248.611194 eV Core-core repulsion = 23129.657844 eV Total energy + Delta-G solvation = -4118.953350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72714 -40.86426 -40.43825 -38.71882 -37.54258 -35.43274 -34.58430 -34.19786 -32.38056 -31.99464 -31.20856 -29.02363 -28.33083 -25.77293 -24.69680 -23.84438 -22.75815 -22.25956 -21.69320 -21.43356 -19.58675 -18.93933 -18.42676 -17.93949 -17.60053 -17.52142 -17.19657 -16.73604 -16.13937 -15.72012 -15.55703 -15.41550 -15.17652 -14.89853 -14.69399 -14.58755 -14.38009 -14.23443 -13.85658 -13.57583 -13.51556 -13.20860 -13.14369 -12.90615 -12.77066 -12.75401 -12.70731 -12.20724 -12.09792 -12.07244 -12.04357 -11.79923 -11.58396 -11.47705 -11.16777 -10.90732 -10.52357 -10.12845 -9.85641 -8.95597 -8.39770 -6.98015 -0.27882 0.45220 1.39486 1.40782 1.50235 1.51561 1.55774 2.19548 2.35010 2.78137 2.82594 2.88237 3.35175 3.52387 3.53316 3.72818 3.85451 3.95376 4.01545 4.07269 4.17035 4.24014 4.33510 4.36089 4.36861 4.45487 4.51129 4.65675 4.72300 4.79980 4.87151 5.00444 5.02327 5.04098 5.11688 5.20312 5.23534 5.27944 5.30822 5.38378 5.40941 5.67646 5.76899 6.04090 6.12080 6.24143 6.68817 6.75184 7.25408 8.28935 8.53076 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001854 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.270222 B =15099.918626 C =15405.494937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.081 0.919 4 O -0.399 6.399 5 C 0.047 3.953 6 C -0.150 4.150 7 C -0.111 4.111 8 H 0.110 0.890 9 C 0.075 3.925 10 O -0.342 6.342 11 C 0.524 3.476 12 O -0.545 6.545 13 C -0.185 4.185 14 C -0.035 4.035 15 C -0.170 4.170 16 C 0.208 3.792 17 N -0.687 5.687 18 C 0.526 3.474 19 O -0.604 6.604 20 C -0.561 4.561 21 H 0.098 0.902 22 C 0.029 3.971 23 N -0.812 5.812 24 Si 1.001 2.999 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.252 1.252 28 C -0.176 4.176 29 C -0.018 4.018 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.414 0.586 42 H 0.278 0.722 43 H 0.163 0.837 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -6.334 18.887 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.099 0.901 4 O -0.319 6.319 5 C -0.029 4.029 6 C -0.187 4.187 7 C -0.130 4.130 8 H 0.128 0.872 9 C 0.001 3.999 10 O -0.258 6.258 11 C 0.372 3.628 12 O -0.437 6.437 13 C -0.188 4.188 14 C -0.054 4.054 15 C -0.191 4.191 16 C 0.108 3.892 17 N -0.330 5.330 18 C 0.333 3.667 19 O -0.489 6.489 20 C -0.596 4.596 21 H 0.116 0.884 22 C -0.188 4.188 23 N -0.440 5.440 24 Si 0.820 3.180 25 H -0.177 1.177 26 H -0.201 1.201 27 H -0.175 1.175 28 C -0.197 4.197 29 C -0.036 4.036 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.251 0.749 42 H 0.088 0.912 43 H 0.181 0.819 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.294 -5.111 19.309 23.994 hybrid contribution 0.438 0.125 -1.168 1.254 sum -12.856 -4.987 18.141 22.787 Atomic orbital electron populations 1.22151 0.93403 1.03196 1.03080 1.22677 0.95312 0.96165 0.83408 0.90137 1.88430 1.71307 1.41549 1.30593 1.23574 0.95462 0.88609 0.95265 1.23397 0.97322 1.01948 0.96052 1.22782 0.99315 0.97434 0.93449 0.87151 1.23112 1.00137 0.94222 0.82395 1.86498 1.75056 1.40767 1.23528 1.21078 0.73267 0.85128 0.83337 1.90807 1.53525 1.16249 1.83129 1.18928 1.12528 0.94830 0.92470 1.20988 0.93338 1.00099 0.90996 1.21028 1.04220 0.94415 0.99438 1.18540 0.90920 0.91895 0.87820 1.43785 1.38108 1.27596 1.23495 1.18789 0.78423 0.84051 0.85402 1.90625 1.55814 1.29380 1.73070 1.21410 1.20304 1.15203 1.02730 0.88435 1.27023 0.94199 0.94106 1.03471 1.70134 1.17529 1.18272 1.38104 0.85008 0.78594 0.78978 0.75429 1.17736 1.20127 1.17536 1.21190 1.06024 1.01243 0.91195 1.21425 0.92571 0.91985 0.97636 0.91626 0.91743 0.90360 0.88715 0.90866 0.88047 0.90811 0.91288 0.90372 0.85504 0.87655 0.74920 0.91169 0.81911 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.44 71.98 0.68 -1.16 16 2 C 0.08 1.16 3.77 31.06 0.12 1.27 16 3 H 0.08 1.15 7.81 -2.39 -0.02 1.13 16 4 O -0.40 -6.93 11.02 -148.98 -1.64 -8.57 16 5 C 0.05 0.58 7.78 72.74 0.57 1.15 16 6 C -0.15 -1.89 6.56 32.14 0.21 -1.68 16 7 C -0.11 -1.49 2.79 -9.53 -0.03 -1.52 16 8 H 0.11 1.28 7.85 -2.39 -0.02 1.26 16 9 C 0.08 1.35 4.76 71.98 0.34 1.70 16 10 O -0.34 -7.67 9.37 -56.63 -0.53 -8.20 16 11 C 0.52 15.42 7.89 70.25 0.55 15.98 16 12 O -0.54 -18.99 16.13 19.81 0.32 -18.67 16 13 C -0.19 -5.74 5.88 -20.07 -0.12 -5.86 16 14 C -0.04 -1.30 9.58 22.51 0.22 -1.08 16 15 C -0.17 -7.27 8.62 22.37 0.19 -7.08 16 16 C 0.21 8.08 6.27 38.49 0.24 8.32 16 17 N -0.69 -28.80 5.30 -307.50 -1.63 -30.43 16 18 C 0.53 28.59 7.46 86.31 0.64 29.23 16 19 O -0.60 -38.17 12.69 -4.42 -0.06 -38.22 16 20 C -0.56 -29.49 9.54 24.80 0.24 -29.26 16 21 H 0.10 4.46 7.85 -2.91 -0.02 4.43 16 22 C 0.03 1.51 5.50 85.33 0.47 1.98 16 23 N -0.81 -47.35 11.82 21.85 0.26 -47.10 16 24 Si 1.00 38.30 29.56 68.60 2.03 40.33 16 25 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 26 H -0.28 -10.36 7.11 99.48 0.71 -9.66 16 27 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 28 C -0.18 -4.98 9.94 22.37 0.22 -4.76 16 29 C -0.02 -0.45 9.60 22.51 0.22 -0.23 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 1.05 7.98 -2.39 -0.02 1.03 16 37 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 4.65 7.64 -2.91 -0.02 4.62 16 40 H 0.11 5.37 6.41 -2.91 -0.02 5.35 16 41 H 0.41 13.95 8.79 -92.71 -0.82 13.14 16 42 H 0.28 14.76 8.29 -92.71 -0.77 13.99 16 43 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.17 3.01 7.60 -2.91 -0.02 2.98 16 Total: -1.00 -74.99 375.92 3.73 -71.26 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.22 Total: 32.59 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 4.76 Total: 7.01 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.37 Total: -77.53 kcal Atomic # 8 Polarization: -71.75 SS G_CDS: -1.91 Total: -73.66 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -74.99 3.73 -71.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869318235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.118 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds