Wall clock time and date at job start Tue Mar 31 2020 17:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00030 * 2 1 4 4 O 1.20820 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47315 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47295 * 179.97438 * 6 5 3 8 8 C 1.36903 * 119.99806 * 53.95687 * 7 6 5 9 9 H 1.08005 * 120.00039 * 36.54735 * 8 7 6 10 10 C 1.39021 * 119.99904 * 216.54239 * 8 7 6 11 11 N 1.31375 * 120.00050 * 22.05813 * 10 8 7 12 12 Si 1.86801 * 120.00061 * 202.05072 * 10 8 7 13 13 H 1.48497 * 109.46977 * 90.00304 * 12 10 8 14 14 H 1.48492 * 109.47304 * 210.00564 * 12 10 8 15 15 H 1.48506 * 109.47129 * 330.00628 * 12 10 8 16 16 C 1.34778 * 120.00095 * 233.95514 * 7 6 5 17 17 O 1.21622 * 119.99929 * 183.17210 * 16 7 6 18 18 C 1.47428 * 120.00088 * 3.17612 * 16 7 6 19 19 C 1.39590 * 120.05936 * 44.30776 * 18 16 7 20 20 C 1.37767 * 120.17698 * 180.02562 * 19 18 16 21 21 C 1.38657 * 119.98667 * 359.80807 * 20 19 18 22 22 C 1.37686 * 120.32728 * 0.02562 * 21 20 19 23 23 C 1.38848 * 120.87221 * 0.06222 * 22 21 20 24 24 O 1.35870 * 111.29845 * 179.31613 * 23 22 21 25 25 C 1.43778 * 109.23294 * 19.62908 * 24 23 22 26 26 H 1.08995 * 110.75802 * 213.79696 * 25 24 23 27 27 C 1.53002 * 110.75347 * 90.61294 * 25 24 23 28 28 C 1.51677 * 132.13070 * 180.89592 * 22 21 20 29 29 H 1.08996 * 109.47190 * 59.99723 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47100 * 299.99611 * 1 2 3 32 32 H 1.09006 * 109.47437 * 300.00186 * 5 3 2 33 33 H 1.09004 * 109.46968 * 59.99994 * 5 3 2 34 34 H 1.08999 * 109.47138 * 300.00063 * 6 5 3 35 35 H 1.09004 * 109.47105 * 60.00081 * 6 5 3 36 36 H 0.97004 * 120.00282 * 184.93004 * 11 10 8 37 37 H 1.08004 * 119.91084 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.00815 * 179.78659 * 20 19 18 39 39 H 1.08000 * 119.83621 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46773 * 61.45463 * 27 25 24 41 41 H 1.09002 * 109.47063 * 181.45362 * 27 25 24 42 42 H 1.08997 * 109.47410 * 301.45592 * 27 25 24 43 43 H 1.09000 * 110.94016 * 282.55663 * 28 22 21 44 44 H 1.08997 * 110.94312 * 46.24507 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1833 2.1575 -0.9594 9 1 5.8055 2.0914 -1.9691 10 6 7.4008 1.5713 -0.6331 11 7 7.6673 1.2622 0.6157 12 14 8.6579 1.2229 -1.9701 13 1 9.5498 2.3994 -2.1297 14 1 9.4667 0.0363 -1.5921 15 1 7.9565 0.9561 -3.2516 16 6 6.1001 3.5402 0.9425 17 8 7.3108 3.6513 0.9088 18 6 5.3294 4.1947 2.0154 19 6 4.3078 3.5004 2.6658 20 6 3.5857 4.1098 3.6683 21 6 3.8757 5.4149 4.0363 22 6 4.8834 6.1079 3.4038 23 6 5.6255 5.5184 2.3891 24 8 6.5543 6.3775 1.8939 25 6 6.7873 7.4258 2.8500 26 1 7.0031 8.3676 2.3457 27 6 7.9251 7.0491 3.8009 28 6 5.4306 7.5094 3.5963 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.9564 0.7806 0.8892 33 1 3.9556 0.7809 -0.8909 34 1 3.6100 3.2359 -0.8910 35 1 3.6107 3.2364 0.8889 36 1 8.5429 0.9197 0.8544 37 1 4.0824 2.4831 2.3817 38 1 2.7936 3.5713 4.1674 39 1 3.3083 5.8901 4.8228 40 1 8.8441 6.9112 3.2312 41 1 8.0667 7.8455 4.5316 42 1 7.6754 6.1224 4.3174 43 1 4.7707 8.2506 3.1455 44 1 5.5903 7.7235 4.6531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:06 Heat of formation + Delta-G solvation = -98.490963 kcal Electronic energy + Delta-G solvation = -29650.102956 eV Core-core repulsion = 25534.397061 eV Total energy + Delta-G solvation = -4115.705895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93141 -40.19772 -38.52875 -36.73226 -36.32311 -34.49051 -32.89994 -32.09627 -30.62147 -30.28133 -29.62527 -27.52453 -26.62352 -25.24492 -23.68825 -22.42493 -21.56912 -21.36469 -20.27324 -19.45343 -17.41720 -16.98781 -16.83219 -16.34906 -16.22786 -16.06593 -15.54695 -15.37521 -14.87161 -14.50244 -14.16210 -13.83983 -13.55988 -13.49545 -13.26581 -12.97442 -12.78733 -12.61561 -12.32259 -12.14081 -12.06700 -11.98322 -11.84855 -11.54752 -11.41854 -11.11732 -11.04368 -10.84455 -10.79883 -10.66540 -10.59357 -10.45463 -10.32707 -10.20833 -10.05292 -8.83616 -8.39244 -8.04568 -7.71573 -7.13489 -6.11737 -3.82305 1.52173 1.71756 2.50280 2.95375 3.35360 3.42126 3.46292 3.56949 3.91883 4.33002 4.51225 4.63255 4.71145 4.88019 5.02636 5.10763 5.14680 5.20823 5.27124 5.29109 5.31971 5.39994 5.51012 5.52966 5.57756 5.63434 5.73509 5.76051 5.81139 5.89452 5.99972 6.02263 6.17479 6.28441 6.35970 6.45457 6.54478 6.66916 6.67196 6.78020 6.81529 7.01428 7.57834 7.61878 8.01435 8.21954 9.00807 9.18325 9.63161 10.30314 10.94659 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008457 B = 0.005571 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.128519 B = 5024.699285 C = 7827.580050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.514 6.514 5 C -0.118 4.118 6 C 0.104 3.896 7 N -0.447 5.447 8 C -0.347 4.347 9 H 0.083 0.917 10 C 0.072 3.928 11 N -0.817 5.817 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.509 3.491 17 O -0.514 6.514 18 C -0.111 4.111 19 C -0.066 4.066 20 C -0.157 4.157 21 C -0.072 4.072 22 C -0.187 4.187 23 C 0.145 3.855 24 O -0.281 6.281 25 C 0.073 3.927 26 H 0.110 0.890 27 C -0.168 4.168 28 C -0.101 4.101 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.265 0.735 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 4.923 6.626 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.156 4.156 6 C -0.021 4.021 7 N -0.169 5.169 8 C -0.473 4.473 9 H 0.100 0.900 10 C -0.140 4.140 11 N -0.450 5.450 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.198 1.198 16 C 0.297 3.703 17 O -0.391 6.391 18 C -0.115 4.115 19 C -0.085 4.085 20 C -0.175 4.175 21 C -0.091 4.091 22 C -0.188 4.188 23 C 0.098 3.902 24 O -0.194 6.194 25 C 0.016 3.984 26 H 0.128 0.872 27 C -0.225 4.225 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.667 5.135 6.497 12.730 hybrid contribution 0.282 -0.174 -0.383 0.506 sum -9.385 4.961 6.115 12.251 Atomic orbital electron populations 1.23185 0.77283 1.03191 1.02272 1.86567 1.22759 1.34190 1.84344 1.24286 0.92609 0.80911 0.71496 1.90633 1.67486 1.36280 1.45786 1.21761 0.84769 1.01803 1.07289 1.21633 0.84797 0.92869 1.02754 1.43203 1.02411 1.43371 1.27865 1.18981 1.04816 1.33319 0.90155 0.89961 1.25056 0.98991 0.93916 0.96039 1.69885 1.21499 1.35515 1.18140 0.86315 0.81550 0.77551 0.81364 1.20410 1.21401 1.19849 1.17473 0.87336 0.81779 0.83707 1.90639 1.13278 1.60810 1.74351 1.19809 0.99350 0.90953 1.01411 1.21137 0.93178 0.99747 0.94403 1.20862 1.01809 0.95327 0.99491 1.20206 0.95990 0.94066 0.98808 1.20665 1.00418 0.96218 1.01475 1.19385 0.88655 0.89749 0.92448 1.86989 1.57049 1.35453 1.39903 1.23470 0.94669 0.90666 0.89548 0.87190 1.22192 0.98779 1.02359 0.99212 1.21866 0.95739 0.94317 1.01905 0.92162 0.88539 0.92157 0.87473 0.86295 0.92557 0.89637 0.92425 0.84931 0.85737 0.86305 0.91086 0.91230 0.91775 0.89426 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.25 10.57 -39.26 -0.41 -5.67 16 3 C 0.46 7.63 7.96 36.01 0.29 7.91 16 4 O -0.51 -9.34 15.73 -18.75 -0.29 -9.63 16 5 C -0.12 -2.11 5.44 -27.89 -0.15 -2.26 16 6 C 0.10 2.12 4.31 -4.04 -0.02 2.11 16 7 N -0.45 -11.24 2.77 -116.03 -0.32 -11.56 16 8 C -0.35 -9.30 8.25 -15.00 -0.12 -9.42 16 9 H 0.08 2.11 7.92 -52.48 -0.42 1.70 16 10 C 0.07 1.98 4.26 -17.46 -0.07 1.91 16 11 N -0.82 -23.77 11.39 55.50 0.63 -23.14 16 12 Si 0.91 21.77 29.61 -169.99 -5.03 16.73 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.51 13.61 6.48 -12.52 -0.08 13.53 16 17 O -0.51 -15.86 14.19 5.26 0.07 -15.78 16 18 C -0.11 -2.48 5.17 -104.72 -0.54 -3.02 16 19 C -0.07 -1.24 7.26 -39.25 -0.29 -1.52 16 20 C -0.16 -2.41 10.05 -39.60 -0.40 -2.81 16 21 C -0.07 -1.05 10.02 -39.63 -0.40 -1.45 16 22 C -0.19 -3.04 6.26 -104.12 -0.65 -3.69 16 23 C 0.14 2.97 6.61 -38.43 -0.25 2.71 16 24 O -0.28 -5.79 10.65 -19.33 -0.21 -6.00 16 25 C 0.07 1.05 4.29 -25.64 -0.11 0.94 16 26 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 27 C -0.17 -2.25 9.54 37.16 0.35 -1.89 16 28 C -0.10 -1.27 6.71 -26.31 -0.18 -1.45 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.11 1.92 7.79 -51.93 -0.40 1.52 16 33 H 0.12 2.16 7.54 -51.93 -0.39 1.77 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.09 1.68 3.87 -51.93 -0.20 1.48 16 36 H 0.27 7.50 8.32 -40.82 -0.34 7.16 16 37 H 0.13 2.43 6.16 -52.48 -0.32 2.11 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -35.33 368.24 -7.50 -42.83 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.93 Total: 3.64 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.56 Total: 3.02 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.31 Total: -34.70 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.84 Total: -37.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.33 -7.50 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.661 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds