Wall clock time and date at job start Tue Mar 31 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00030 * 2 1 4 4 O 1.20820 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47315 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47295 * 179.97438 * 6 5 3 8 8 C 1.36903 * 119.99806 * 53.95687 * 7 6 5 9 9 H 1.08005 * 120.00039 * 36.54735 * 8 7 6 10 10 C 1.39021 * 119.99904 * 216.54239 * 8 7 6 11 11 N 1.31375 * 120.00050 * 22.05813 * 10 8 7 12 12 Si 1.86801 * 120.00061 * 202.05072 * 10 8 7 13 13 H 1.48497 * 109.46977 * 90.00304 * 12 10 8 14 14 H 1.48492 * 109.47304 * 210.00564 * 12 10 8 15 15 H 1.48506 * 109.47129 * 330.00628 * 12 10 8 16 16 C 1.34778 * 120.00095 * 233.95514 * 7 6 5 17 17 O 1.21622 * 119.99929 * 183.17210 * 16 7 6 18 18 C 1.47428 * 120.00088 * 3.17612 * 16 7 6 19 19 C 1.39590 * 120.05936 * 44.30776 * 18 16 7 20 20 C 1.37767 * 120.17698 * 180.02562 * 19 18 16 21 21 C 1.38657 * 119.98667 * 359.80807 * 20 19 18 22 22 C 1.37686 * 120.32728 * 0.02562 * 21 20 19 23 23 C 1.38848 * 120.87221 * 0.06222 * 22 21 20 24 24 O 1.35870 * 111.29845 * 179.31613 * 23 22 21 25 25 C 1.43778 * 109.23294 * 19.62908 * 24 23 22 26 26 H 1.08995 * 110.75802 * 213.79696 * 25 24 23 27 27 C 1.53002 * 110.75347 * 90.61294 * 25 24 23 28 28 C 1.51677 * 132.13070 * 180.89592 * 22 21 20 29 29 H 1.08996 * 109.47190 * 59.99723 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47100 * 299.99611 * 1 2 3 32 32 H 1.09006 * 109.47437 * 300.00186 * 5 3 2 33 33 H 1.09004 * 109.46968 * 59.99994 * 5 3 2 34 34 H 1.08999 * 109.47138 * 300.00063 * 6 5 3 35 35 H 1.09004 * 109.47105 * 60.00081 * 6 5 3 36 36 H 0.97004 * 120.00282 * 184.93004 * 11 10 8 37 37 H 1.08004 * 119.91084 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.00815 * 179.78659 * 20 19 18 39 39 H 1.08000 * 119.83621 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46773 * 61.45463 * 27 25 24 41 41 H 1.09002 * 109.47063 * 181.45362 * 27 25 24 42 42 H 1.08997 * 109.47410 * 301.45592 * 27 25 24 43 43 H 1.09000 * 110.94016 * 282.55663 * 28 22 21 44 44 H 1.08997 * 110.94312 * 46.24507 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1833 2.1575 -0.9594 9 1 5.8055 2.0914 -1.9691 10 6 7.4008 1.5713 -0.6331 11 7 7.6673 1.2622 0.6157 12 14 8.6579 1.2229 -1.9701 13 1 9.5498 2.3994 -2.1297 14 1 9.4667 0.0363 -1.5921 15 1 7.9565 0.9561 -3.2516 16 6 6.1001 3.5402 0.9425 17 8 7.3108 3.6513 0.9088 18 6 5.3294 4.1947 2.0154 19 6 4.3078 3.5004 2.6658 20 6 3.5857 4.1098 3.6683 21 6 3.8757 5.4149 4.0363 22 6 4.8834 6.1079 3.4038 23 6 5.6255 5.5184 2.3891 24 8 6.5543 6.3775 1.8939 25 6 6.7873 7.4258 2.8500 26 1 7.0031 8.3676 2.3457 27 6 7.9251 7.0491 3.8009 28 6 5.4306 7.5094 3.5963 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.9564 0.7806 0.8892 33 1 3.9556 0.7809 -0.8909 34 1 3.6100 3.2359 -0.8910 35 1 3.6107 3.2364 0.8889 36 1 8.5429 0.9197 0.8544 37 1 4.0824 2.4831 2.3817 38 1 2.7936 3.5713 4.1674 39 1 3.3083 5.8901 4.8228 40 1 8.8441 6.9112 3.2312 41 1 8.0667 7.8455 4.5316 42 1 7.6754 6.1224 4.3174 43 1 4.7707 8.2506 3.1455 44 1 5.5903 7.7235 4.6531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:05 Heat of formation + Delta-G solvation = -121.237372 kcal Electronic energy + Delta-G solvation = -29651.089315 eV Core-core repulsion = 25534.397061 eV Total energy + Delta-G solvation = -4116.692254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25785 -41.50393 -40.27529 -38.17228 -37.61912 -36.38394 -34.43521 -33.76151 -32.00941 -31.80068 -31.06511 -28.59890 -27.76523 -27.13013 -25.23235 -23.94428 -22.84663 -22.63526 -21.64308 -21.19509 -18.80478 -18.69384 -18.17530 -17.72487 -17.54681 -17.37023 -17.09159 -16.82780 -16.54145 -16.06173 -15.76603 -15.49283 -14.98111 -14.73479 -14.54337 -14.27840 -14.22088 -14.06793 -13.77462 -13.53309 -13.39361 -13.22023 -13.10450 -12.98247 -12.84622 -12.75994 -12.63093 -12.51618 -12.34664 -12.16275 -12.01588 -11.83815 -11.75635 -11.59537 -11.53552 -10.88096 -10.17967 -9.66719 -9.19315 -9.07542 -8.21451 -5.94868 0.14398 0.38234 1.16890 1.38209 1.47088 1.51019 1.72970 2.25354 2.37383 2.49993 2.87299 3.07793 3.30481 3.46910 3.61886 3.81674 3.98111 4.03077 4.05912 4.06686 4.23571 4.23590 4.31081 4.36787 4.38632 4.41310 4.54015 4.59096 4.67199 4.74855 4.78060 4.86782 4.87259 4.93980 5.07253 5.09140 5.20924 5.35342 5.37913 5.39974 5.47151 5.48583 5.77593 6.13150 6.30172 6.73471 6.95963 7.18378 7.60723 8.31268 8.84990 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008457 B = 0.005571 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.128519 B = 5024.699285 C = 7827.580050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.478 3.522 4 O -0.531 6.531 5 C -0.108 4.108 6 C 0.107 3.893 7 N -0.458 5.458 8 C -0.360 4.360 9 H 0.088 0.912 10 C 0.025 3.975 11 N -0.851 5.851 12 Si 0.962 3.038 13 H -0.298 1.298 14 H -0.281 1.281 15 H -0.250 1.250 16 C 0.500 3.500 17 O -0.575 6.575 18 C -0.157 4.157 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.056 4.056 22 C -0.182 4.182 23 C 0.115 3.885 24 O -0.327 6.327 25 C 0.057 3.943 26 H 0.136 0.864 27 C -0.164 4.164 28 C -0.088 4.088 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.126 0.874 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.039 0.961 43 H 0.112 0.888 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 6.140 8.447 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.322 3.678 4 O -0.420 6.420 5 C -0.147 4.147 6 C -0.016 4.016 7 N -0.178 5.178 8 C -0.487 4.487 9 H 0.106 0.894 10 C -0.183 4.183 11 N -0.486 5.486 12 Si 0.787 3.213 13 H -0.225 1.225 14 H -0.206 1.206 15 H -0.173 1.173 16 C 0.289 3.711 17 O -0.456 6.456 18 C -0.161 4.161 19 C -0.096 4.096 20 C -0.164 4.164 21 C -0.073 4.073 22 C -0.183 4.183 23 C 0.069 3.931 24 O -0.242 6.242 25 C 0.003 3.997 26 H 0.153 0.847 27 C -0.221 4.221 28 C -0.124 4.124 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.144 0.856 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.058 0.942 43 H 0.130 0.870 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.648 6.321 8.300 16.396 hybrid contribution 1.061 -0.467 -0.888 1.460 sum -11.588 5.855 7.412 14.950 Atomic orbital electron populations 1.23581 0.74619 1.05713 1.02732 1.86531 1.25245 1.32613 1.83709 1.23668 0.91663 0.81320 0.71152 1.90625 1.67651 1.36975 1.46795 1.21475 0.86574 0.99725 1.06898 1.21661 0.82134 0.94776 1.03061 1.43393 1.04229 1.42875 1.27350 1.19274 1.05488 1.33003 0.90920 0.89408 1.25858 1.00709 0.93954 0.97749 1.69988 1.21286 1.37344 1.20032 0.85433 0.79158 0.76607 0.80079 1.22500 1.20610 1.17296 1.18280 0.87189 0.81051 0.84559 1.90563 1.15919 1.62917 1.76188 1.19673 1.01608 0.92650 1.02189 1.21154 0.93214 0.99552 0.95662 1.21312 1.01417 0.95947 0.97731 1.20798 0.94717 0.93344 0.98481 1.21194 0.99713 0.97855 0.99509 1.19720 0.89831 0.89619 0.93963 1.86928 1.57657 1.36941 1.42663 1.23941 0.96283 0.90045 0.89475 0.84692 1.22192 0.97621 1.02724 0.99542 1.21959 0.94216 0.92395 1.03868 0.91904 0.85062 0.91551 0.87847 0.86857 0.92867 0.88604 0.93205 0.85629 0.81872 0.81254 0.93183 0.86875 0.94191 0.87013 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -10.03 10.57 -51.42 -0.54 -10.57 16 3 C 0.48 15.43 7.96 71.24 0.57 16.00 16 4 O -0.53 -18.79 15.73 21.98 0.35 -18.44 16 5 C -0.11 -3.97 5.44 29.85 0.16 -3.81 16 6 C 0.11 4.55 4.31 86.38 0.37 4.92 16 7 N -0.46 -24.34 2.77 -639.24 -1.77 -26.11 16 8 C -0.36 -20.27 8.25 84.09 0.69 -19.58 16 9 H 0.09 4.68 7.92 -2.91 -0.02 4.66 16 10 C 0.02 1.45 4.26 84.95 0.36 1.81 16 11 N -0.85 -52.51 11.39 21.68 0.25 -52.27 16 12 Si 0.96 46.57 29.61 68.60 2.03 48.60 16 13 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 16 C 0.50 28.49 6.48 86.66 0.56 29.05 16 17 O -0.57 -38.21 14.19 -4.10 -0.06 -38.27 16 18 C -0.16 -7.32 5.17 -19.93 -0.10 -7.43 16 19 C -0.08 -2.91 7.26 22.48 0.16 -2.75 16 20 C -0.15 -4.06 10.05 22.26 0.22 -3.84 16 21 C -0.06 -1.37 10.02 22.24 0.22 -1.15 16 22 C -0.18 -5.45 6.26 -19.54 -0.12 -5.57 16 23 C 0.12 4.83 6.61 23.02 0.15 4.98 16 24 O -0.33 -14.03 10.65 -92.09 -0.98 -15.01 16 25 C 0.06 1.59 4.29 31.30 0.13 1.72 16 26 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 27 C -0.16 -4.27 9.54 71.98 0.69 -3.58 16 28 C -0.09 -1.87 6.71 30.87 0.21 -1.66 16 29 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.10 3.86 7.79 -2.38 -0.02 3.84 16 33 H 0.11 4.26 7.54 -2.38 -0.02 4.24 16 34 H 0.05 2.25 8.10 -2.39 -0.02 2.23 16 35 H 0.10 3.89 3.87 -2.38 -0.01 3.88 16 36 H 0.26 15.55 8.32 -92.71 -0.77 14.78 16 37 H 0.13 4.75 6.16 -2.91 -0.02 4.73 16 38 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.12 1.78 7.93 -2.39 -0.02 1.76 16 Total: -1.00 -85.20 368.24 5.78 -79.42 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 1.02 Total: 21.84 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.48 Total: 10.81 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.52 Total: -78.38 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -1.24 Total: -82.29 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -85.20 5.78 -79.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.818 kcal (2) G-P(sol) polarization free energy of solvation -85.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds