Wall clock time and date at job start Tue Mar 31 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99675 * 2 1 4 4 O 1.20824 * 120.00321 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00010 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47009 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47150 * 179.97438 * 6 5 3 8 8 C 1.36909 * 119.99963 * 53.81040 * 7 6 5 9 9 H 1.08002 * 119.99725 * 36.53620 * 8 7 6 10 10 C 1.39014 * 120.00373 * 216.53329 * 8 7 6 11 11 N 1.31390 * 119.99652 * 22.04727 * 10 8 7 12 12 Si 1.86796 * 120.00506 * 202.05424 * 10 8 7 13 13 H 1.48500 * 109.47260 * 64.99753 * 12 10 8 14 14 H 1.48499 * 109.47507 * 184.99834 * 12 10 8 15 15 H 1.48510 * 109.46913 * 305.00090 * 12 10 8 16 16 C 1.34768 * 120.00053 * 233.81414 * 7 6 5 17 17 O 1.21628 * 120.00310 * 183.17430 * 16 7 6 18 18 C 1.47437 * 120.00070 * 3.18134 * 16 7 6 19 19 C 1.39581 * 120.05758 * 44.40126 * 18 16 7 20 20 C 1.37775 * 120.17858 * 180.02562 * 19 18 16 21 21 C 1.38656 * 119.97678 * 0.21693 * 20 19 18 22 22 C 1.37677 * 120.33519 * 359.94414 * 21 20 19 23 23 C 1.38855 * 120.87256 * 359.37983 * 22 21 20 24 24 O 1.35866 * 111.31057 * 180.79813 * 23 22 21 25 25 C 1.43780 * 109.33930 * 341.30432 * 24 23 22 26 26 H 1.09002 * 110.75186 * 145.84542 * 25 24 23 27 27 C 1.53003 * 110.75186 * 269.20904 * 25 24 23 28 28 C 1.51678 * 132.13062 * 179.40678 * 22 21 20 29 29 H 1.09004 * 109.46640 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47167 * 299.99329 * 1 2 3 31 31 H 1.08999 * 109.47378 * 59.99870 * 1 2 3 32 32 H 1.09002 * 109.46950 * 299.99528 * 5 3 2 33 33 H 1.08993 * 109.47153 * 59.99614 * 5 3 2 34 34 H 1.09008 * 109.47070 * 299.99623 * 6 5 3 35 35 H 1.08993 * 109.47666 * 59.99698 * 6 5 3 36 36 H 0.97002 * 119.99594 * 184.92828 * 11 10 8 37 37 H 1.08001 * 119.91229 * 0.02741 * 19 18 16 38 38 H 1.07995 * 120.00848 * 180.20062 * 20 19 18 39 39 H 1.08005 * 119.83278 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.46909 * 173.34349 * 27 25 24 41 41 H 1.08999 * 109.46958 * 293.34104 * 27 25 24 42 42 H 1.08998 * 109.47264 * 53.34716 * 27 25 24 43 43 H 1.09001 * 110.94320 * 313.65920 * 28 22 21 44 44 H 1.09003 * 110.94351 * 77.35236 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8190 0.0002 8 6 6.1833 2.1563 -0.9570 9 1 5.8055 2.0883 -1.9665 10 6 7.4009 1.5708 -0.6297 11 7 7.6675 1.2641 0.6198 12 14 8.6581 1.2204 -1.9661 13 1 9.1289 2.5016 -2.5511 14 1 9.8113 0.4898 -1.3816 15 1 8.0336 0.3913 -3.0281 16 6 6.0998 3.5420 0.9426 17 8 7.3105 3.6532 0.9089 18 6 5.3288 4.1980 2.0145 19 6 4.3088 3.5039 2.6672 20 6 3.5864 4.1147 3.6689 21 6 3.8694 5.4238 4.0276 22 6 4.8712 6.1190 3.3883 23 6 5.6238 5.5229 2.3851 24 8 6.5658 6.3746 1.9023 25 6 6.2133 7.7234 2.2541 26 1 7.1062 8.3184 2.4462 27 6 5.3587 8.3637 1.1583 28 6 5.3909 7.5346 3.5507 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.9564 0.7808 0.8892 33 1 3.9557 0.7811 -0.8907 34 1 3.6098 3.2369 -0.8894 35 1 3.6106 3.2358 0.8905 36 1 8.5432 0.9222 0.8589 37 1 4.0851 2.4854 2.3863 38 1 2.7999 3.5741 4.1743 39 1 3.3014 5.9005 4.8129 40 1 5.0056 9.3382 1.4959 41 1 5.9575 8.4869 0.2559 42 1 4.5042 7.7224 0.9427 43 1 4.5686 8.2485 3.5980 44 1 6.0277 7.6172 4.4315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:09 Heat of formation + Delta-G solvation = -98.503989 kcal Electronic energy + Delta-G solvation = -29698.519016 eV Core-core repulsion = 25582.812556 eV Total energy + Delta-G solvation = -4115.706460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95327 -40.20276 -38.53442 -36.73859 -36.32789 -34.49428 -32.92542 -32.10702 -30.64567 -30.28022 -29.62939 -27.52842 -26.63808 -25.24600 -23.69278 -22.43142 -21.58281 -21.37936 -20.27752 -19.46308 -17.42006 -16.95106 -16.81736 -16.35044 -16.22542 -16.12360 -15.60006 -15.38007 -14.87225 -14.55570 -14.18712 -13.81707 -13.60000 -13.43472 -13.27173 -12.95060 -12.81513 -12.53800 -12.38829 -12.20536 -12.11798 -11.99297 -11.81356 -11.55011 -11.42177 -11.14945 -11.05373 -10.80674 -10.77345 -10.72027 -10.66601 -10.50923 -10.28641 -10.21515 -10.05221 -8.83021 -8.39492 -8.05748 -7.70844 -7.13110 -6.11386 -3.82185 1.51967 1.71984 2.49670 2.94914 3.34742 3.42236 3.46860 3.58598 3.86203 4.33210 4.50232 4.65274 4.70967 4.87258 4.98152 5.10212 5.14140 5.20297 5.24528 5.29144 5.30758 5.39178 5.49704 5.52423 5.55312 5.62974 5.71799 5.75639 5.80362 5.86527 5.98130 6.00631 6.16860 6.19755 6.35465 6.44872 6.53715 6.66572 6.66807 6.77525 6.81484 7.01011 7.57298 7.61767 8.00840 8.22225 9.00977 9.18458 9.63260 10.30491 10.95125 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.005715 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.079600 B = 4898.095204 C = 7513.354712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.514 6.514 5 C -0.118 4.118 6 C 0.104 3.896 7 N -0.446 5.446 8 C -0.348 4.348 9 H 0.082 0.918 10 C 0.071 3.929 11 N -0.817 5.817 12 Si 0.906 3.094 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.509 3.491 17 O -0.514 6.514 18 C -0.111 4.111 19 C -0.066 4.066 20 C -0.157 4.157 21 C -0.072 4.072 22 C -0.187 4.187 23 C 0.145 3.855 24 O -0.278 6.278 25 C 0.070 3.930 26 H 0.112 0.888 27 C -0.169 4.169 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.266 0.734 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 5.713 5.044 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.156 4.156 6 C -0.020 4.020 7 N -0.168 5.168 8 C -0.474 4.474 9 H 0.100 0.900 10 C -0.140 4.140 11 N -0.450 5.450 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.297 3.703 17 O -0.391 6.391 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.175 4.175 21 C -0.090 4.090 22 C -0.188 4.188 23 C 0.098 3.902 24 O -0.191 6.191 25 C 0.014 3.986 26 H 0.130 0.870 27 C -0.227 4.227 28 C -0.138 4.138 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.143 5.889 4.995 13.557 hybrid contribution 0.254 -0.159 -0.415 0.511 sum -10.890 5.729 4.581 13.130 Atomic orbital electron populations 1.23188 0.77278 1.03197 1.02269 1.86568 1.22764 1.34187 1.84335 1.24291 0.92611 0.80909 0.71479 1.90632 1.67491 1.36279 1.45814 1.21762 0.84759 1.01805 1.07302 1.21627 0.84816 0.92875 1.02696 1.43181 1.02385 1.43294 1.27987 1.18925 1.04872 1.33420 0.90184 0.90023 1.25061 0.98991 0.93930 0.96036 1.69880 1.21635 1.35389 1.18112 0.86367 0.80809 0.78201 0.81290 1.20152 1.21282 1.20273 1.17478 0.87331 0.81780 0.83725 1.90647 1.13296 1.60825 1.74308 1.19801 0.98599 0.92409 1.00755 1.21130 0.93239 0.99666 0.94390 1.20863 1.01930 0.95065 0.99632 1.20204 0.96003 0.94061 0.98765 1.20660 1.00941 0.97051 1.00135 1.19397 0.88132 0.91042 0.91647 1.87031 1.42270 1.15221 1.74581 1.23436 0.98537 0.83248 0.93401 0.87042 1.22229 1.00584 1.00708 0.99154 1.21808 0.99759 0.93849 0.98388 0.88537 0.92152 0.92162 0.87466 0.86293 0.92613 0.89653 0.92332 0.84936 0.85726 0.86297 0.91086 0.91306 0.91757 0.89409 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.24 10.57 -39.26 -0.41 -5.65 16 3 C 0.46 7.59 7.96 36.01 0.29 7.88 16 4 O -0.51 -9.27 15.73 -18.75 -0.29 -9.57 16 5 C -0.12 -2.10 5.45 -27.88 -0.15 -2.25 16 6 C 0.10 2.12 4.32 -4.04 -0.02 2.10 16 7 N -0.45 -11.21 2.77 -116.03 -0.32 -11.53 16 8 C -0.35 -9.33 8.25 -15.00 -0.12 -9.45 16 9 H 0.08 2.08 7.92 -52.49 -0.42 1.67 16 10 C 0.07 1.98 4.26 -17.45 -0.07 1.91 16 11 N -0.82 -23.88 11.39 55.50 0.63 -23.25 16 12 Si 0.91 21.82 29.61 -169.99 -5.03 16.79 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.51 13.62 6.48 -12.52 -0.08 13.54 16 17 O -0.51 -15.98 14.18 5.25 0.07 -15.90 16 18 C -0.11 -2.49 5.17 -104.72 -0.54 -3.03 16 19 C -0.07 -1.23 7.26 -39.25 -0.28 -1.52 16 20 C -0.16 -2.41 10.05 -39.60 -0.40 -2.81 16 21 C -0.07 -1.05 10.02 -39.63 -0.40 -1.44 16 22 C -0.19 -3.04 6.26 -104.12 -0.65 -3.69 16 23 C 0.14 2.97 6.60 -38.42 -0.25 2.72 16 24 O -0.28 -5.74 10.63 -19.32 -0.21 -5.94 16 25 C 0.07 0.99 4.32 -25.83 -0.11 0.88 16 26 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 27 C -0.17 -2.10 9.51 37.16 0.35 -1.75 16 28 C -0.10 -1.27 6.65 -26.50 -0.18 -1.44 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.11 1.92 7.79 -51.93 -0.40 1.52 16 33 H 0.12 2.16 7.54 -51.93 -0.39 1.77 16 34 H 0.06 1.13 8.10 -51.92 -0.42 0.71 16 35 H 0.09 1.67 3.88 -51.93 -0.20 1.47 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.13 2.43 6.18 -52.49 -0.32 2.11 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -35.51 368.12 -7.50 -43.01 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.93 Total: 3.41 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.56 Total: 3.08 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.31 Total: -34.78 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.84 Total: -37.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.51 -7.50 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.490 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds