Wall clock time and date at job start Tue Mar 31 2020 17:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99675 * 2 1 4 4 O 1.20824 * 120.00321 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00010 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47009 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47150 * 179.97438 * 6 5 3 8 8 C 1.36909 * 119.99963 * 53.81040 * 7 6 5 9 9 H 1.08002 * 119.99725 * 36.53620 * 8 7 6 10 10 C 1.39014 * 120.00373 * 216.53329 * 8 7 6 11 11 N 1.31390 * 119.99652 * 22.04727 * 10 8 7 12 12 Si 1.86796 * 120.00506 * 202.05424 * 10 8 7 13 13 H 1.48500 * 109.47260 * 64.99753 * 12 10 8 14 14 H 1.48499 * 109.47507 * 184.99834 * 12 10 8 15 15 H 1.48510 * 109.46913 * 305.00090 * 12 10 8 16 16 C 1.34768 * 120.00053 * 233.81414 * 7 6 5 17 17 O 1.21628 * 120.00310 * 183.17430 * 16 7 6 18 18 C 1.47437 * 120.00070 * 3.18134 * 16 7 6 19 19 C 1.39581 * 120.05758 * 44.40126 * 18 16 7 20 20 C 1.37775 * 120.17858 * 180.02562 * 19 18 16 21 21 C 1.38656 * 119.97678 * 0.21693 * 20 19 18 22 22 C 1.37677 * 120.33519 * 359.94414 * 21 20 19 23 23 C 1.38855 * 120.87256 * 359.37983 * 22 21 20 24 24 O 1.35866 * 111.31057 * 180.79813 * 23 22 21 25 25 C 1.43780 * 109.33930 * 341.30432 * 24 23 22 26 26 H 1.09002 * 110.75186 * 145.84542 * 25 24 23 27 27 C 1.53003 * 110.75186 * 269.20904 * 25 24 23 28 28 C 1.51678 * 132.13062 * 179.40678 * 22 21 20 29 29 H 1.09004 * 109.46640 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47167 * 299.99329 * 1 2 3 31 31 H 1.08999 * 109.47378 * 59.99870 * 1 2 3 32 32 H 1.09002 * 109.46950 * 299.99528 * 5 3 2 33 33 H 1.08993 * 109.47153 * 59.99614 * 5 3 2 34 34 H 1.09008 * 109.47070 * 299.99623 * 6 5 3 35 35 H 1.08993 * 109.47666 * 59.99698 * 6 5 3 36 36 H 0.97002 * 119.99594 * 184.92828 * 11 10 8 37 37 H 1.08001 * 119.91229 * 0.02741 * 19 18 16 38 38 H 1.07995 * 120.00848 * 180.20062 * 20 19 18 39 39 H 1.08005 * 119.83278 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.46909 * 173.34349 * 27 25 24 41 41 H 1.08999 * 109.46958 * 293.34104 * 27 25 24 42 42 H 1.08998 * 109.47264 * 53.34716 * 27 25 24 43 43 H 1.09001 * 110.94320 * 313.65920 * 28 22 21 44 44 H 1.09003 * 110.94351 * 77.35236 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8190 0.0002 8 6 6.1833 2.1563 -0.9570 9 1 5.8055 2.0883 -1.9665 10 6 7.4009 1.5708 -0.6297 11 7 7.6675 1.2641 0.6198 12 14 8.6581 1.2204 -1.9661 13 1 9.1289 2.5016 -2.5511 14 1 9.8113 0.4898 -1.3816 15 1 8.0336 0.3913 -3.0281 16 6 6.0998 3.5420 0.9426 17 8 7.3105 3.6532 0.9089 18 6 5.3288 4.1980 2.0145 19 6 4.3088 3.5039 2.6672 20 6 3.5864 4.1147 3.6689 21 6 3.8694 5.4238 4.0276 22 6 4.8712 6.1190 3.3883 23 6 5.6238 5.5229 2.3851 24 8 6.5658 6.3746 1.9023 25 6 6.2133 7.7234 2.2541 26 1 7.1062 8.3184 2.4462 27 6 5.3587 8.3637 1.1583 28 6 5.3909 7.5346 3.5507 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.9564 0.7808 0.8892 33 1 3.9557 0.7811 -0.8907 34 1 3.6098 3.2369 -0.8894 35 1 3.6106 3.2358 0.8905 36 1 8.5432 0.9222 0.8589 37 1 4.0851 2.4854 2.3863 38 1 2.7999 3.5741 4.1743 39 1 3.3014 5.9005 4.8129 40 1 5.0056 9.3382 1.4959 41 1 5.9575 8.4869 0.2559 42 1 4.5042 7.7224 0.9427 43 1 4.5686 8.2485 3.5980 44 1 6.0277 7.6172 4.4315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:08 Heat of formation + Delta-G solvation = -121.421219 kcal Electronic energy + Delta-G solvation = -29699.512782 eV Core-core repulsion = 25582.812556 eV Total energy + Delta-G solvation = -4116.700226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27264 -41.50374 -40.27933 -38.17611 -37.61948 -36.38726 -34.43900 -33.77837 -32.01559 -31.79276 -31.06810 -28.59751 -27.74721 -27.13257 -25.23289 -23.94469 -22.85425 -22.63345 -21.64281 -21.20389 -18.80400 -18.65906 -18.17593 -17.69127 -17.54099 -17.43612 -17.05173 -16.86021 -16.58621 -16.11297 -15.78311 -15.44457 -14.96902 -14.66572 -14.54200 -14.29746 -14.19484 -14.09180 -13.71151 -13.53535 -13.44720 -13.17573 -13.13551 -12.98719 -12.82452 -12.75855 -12.63016 -12.52195 -12.31523 -12.21199 -12.05663 -11.87492 -11.75464 -11.57995 -11.52189 -10.86386 -10.18652 -9.66967 -9.19665 -9.06721 -8.21467 -5.94932 0.14431 0.38590 1.16818 1.38247 1.47679 1.50328 1.72983 2.30664 2.37413 2.41949 2.87518 3.07651 3.30294 3.47319 3.63665 3.81852 3.97642 4.03052 4.05520 4.06816 4.23443 4.24114 4.30805 4.36697 4.38659 4.41440 4.54277 4.59197 4.68281 4.74842 4.79304 4.86719 4.87379 4.93921 5.07144 5.09491 5.20760 5.35188 5.37851 5.39867 5.46858 5.48503 5.77765 6.12881 6.30593 6.73389 6.96022 7.18482 7.60702 8.31350 8.85015 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.005715 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.079600 B = 4898.095204 C = 7513.354712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.478 3.522 4 O -0.530 6.530 5 C -0.109 4.109 6 C 0.108 3.892 7 N -0.457 5.457 8 C -0.362 4.362 9 H 0.089 0.911 10 C 0.025 3.975 11 N -0.852 5.852 12 Si 0.963 3.037 13 H -0.290 1.290 14 H -0.288 1.288 15 H -0.249 1.249 16 C 0.500 3.500 17 O -0.576 6.576 18 C -0.158 4.158 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.055 4.055 22 C -0.182 4.182 23 C 0.116 3.884 24 O -0.326 6.326 25 C 0.055 3.945 26 H 0.132 0.868 27 C -0.164 4.164 28 C -0.089 4.089 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.126 0.874 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.126 0.874 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 6.940 6.720 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.322 3.678 4 O -0.420 6.420 5 C -0.147 4.147 6 C -0.016 4.016 7 N -0.178 5.178 8 C -0.488 4.488 9 H 0.106 0.894 10 C -0.183 4.183 11 N -0.487 5.487 12 Si 0.788 3.212 13 H -0.217 1.217 14 H -0.213 1.213 15 H -0.173 1.173 16 C 0.289 3.711 17 O -0.458 6.458 18 C -0.162 4.162 19 C -0.095 4.095 20 C -0.164 4.164 21 C -0.073 4.073 22 C -0.183 4.183 23 C 0.069 3.931 24 O -0.241 6.241 25 C 0.000 4.000 26 H 0.150 0.850 27 C -0.221 4.221 28 C -0.126 4.126 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.144 0.856 38 H 0.181 0.819 39 H 0.188 0.812 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.144 0.856 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.231 7.088 6.650 17.233 hybrid contribution 1.052 -0.447 -0.887 1.446 sum -13.179 6.642 5.763 15.844 Atomic orbital electron populations 1.23585 0.74609 1.05711 1.02741 1.86533 1.25257 1.32623 1.83709 1.23666 0.91654 0.81323 0.71155 1.90624 1.67642 1.36955 1.46792 1.21476 0.86589 0.99747 1.06886 1.21656 0.82106 0.94759 1.03048 1.43369 1.04227 1.42756 1.27442 1.19236 1.05539 1.33060 0.90993 0.89381 1.25871 1.00732 0.93955 0.97742 1.69989 1.21376 1.37306 1.20034 0.85486 0.78655 0.77562 0.79504 1.21676 1.21341 1.17303 1.18284 0.87159 0.81041 0.84585 1.90569 1.15997 1.63003 1.76193 1.19668 1.00854 0.94075 1.01588 1.21148 0.93216 0.99498 0.95679 1.21313 1.01533 0.95693 0.97869 1.20796 0.94705 0.93370 0.98422 1.21185 1.00100 0.98655 0.98340 1.19732 0.89182 0.90874 0.93282 1.86970 1.43570 1.17980 1.75545 1.23908 1.00265 0.80880 0.94960 0.85040 1.22223 0.99299 1.02116 0.98472 1.21908 1.00724 0.92141 0.97780 0.85080 0.91539 0.91885 0.87882 0.86867 0.92863 0.88591 0.93187 0.85640 0.81852 0.81246 0.86967 0.92572 0.93799 0.85585 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -10.00 10.57 -51.41 -0.54 -10.55 16 3 C 0.48 15.36 7.96 71.24 0.57 15.93 16 4 O -0.53 -18.63 15.73 21.97 0.35 -18.29 16 5 C -0.11 -3.97 5.45 29.85 0.16 -3.81 16 6 C 0.11 4.55 4.32 86.38 0.37 4.93 16 7 N -0.46 -24.28 2.77 -639.25 -1.77 -26.05 16 8 C -0.36 -20.36 8.25 84.09 0.69 -19.66 16 9 H 0.09 4.68 7.92 -2.91 -0.02 4.66 16 10 C 0.02 1.44 4.26 84.95 0.36 1.80 16 11 N -0.85 -52.79 11.39 21.68 0.25 -52.54 16 12 Si 0.96 46.63 29.61 68.60 2.03 48.66 16 13 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 15 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 16 C 0.50 28.53 6.48 86.67 0.56 29.10 16 17 O -0.58 -38.56 14.18 -4.12 -0.06 -38.62 16 18 C -0.16 -7.36 5.17 -19.93 -0.10 -7.46 16 19 C -0.08 -2.90 7.26 22.48 0.16 -2.73 16 20 C -0.15 -4.06 10.05 22.26 0.22 -3.84 16 21 C -0.06 -1.36 10.02 22.24 0.22 -1.14 16 22 C -0.18 -5.45 6.26 -19.54 -0.12 -5.58 16 23 C 0.12 4.86 6.60 23.02 0.15 5.01 16 24 O -0.33 -14.01 10.63 -92.04 -0.98 -14.98 16 25 C 0.05 1.48 4.32 31.18 0.13 1.62 16 26 H 0.13 2.88 8.14 -2.39 -0.02 2.87 16 27 C -0.16 -3.86 9.51 71.98 0.68 -3.17 16 28 C -0.09 -1.90 6.65 30.74 0.20 -1.70 16 29 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 31 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.10 3.85 7.79 -2.39 -0.02 3.83 16 33 H 0.11 4.25 7.54 -2.39 -0.02 4.23 16 34 H 0.05 2.24 8.10 -2.38 -0.02 2.22 16 35 H 0.10 3.87 3.88 -2.39 -0.01 3.86 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.13 4.74 6.18 -2.91 -0.02 4.73 16 38 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.20 8.08 -2.39 -0.02 1.18 16 43 H 0.13 1.76 7.92 -2.39 -0.02 1.74 16 44 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -85.51 368.12 5.77 -79.73 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.02 Total: 21.65 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.48 Total: 10.98 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -1.52 Total: -78.59 kcal Atomic # 8 Polarization: -81.20 SS G_CDS: -1.23 Total: -82.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -85.51 5.77 -79.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.688 kcal (2) G-P(sol) polarization free energy of solvation -85.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds